| Literature DB >> 21578205 |
Abstract
The title compound, [Ag(C(9)H(5)N(2)O(4))(C(9)H(6)N(2)O(4))]·H(2)O, contains one independent Ag atom, a neutral 1H-benzimidazole-5,6-dicarboxylic acid (bdcH), its monodeprotonated form, i.e. 5-carboxyl-ato-1H-1,3-benzimidazole-6-carboxylic acid (bdc), and one solvent water mol-ecule, the latter being disordered over three sites with site occupancy factors of 0.375 (× 2) and 0.25. In addition, the H atom on one carboxylic acid residue is disordered, being connected to each of the O atoms 50% of the time. The Ag atom is in a virtually linear geometry defined by two N atoms derived from the bdc and bdcH ligands. The three-dimensional supra-molecular structure is stablized by extensive O-H⋯O and N-H⋯O hydrogen bonds. An intramolecular O-H⋯O hydrogen bond is also present.Entities:
Year: 2009 PMID: 21578205 PMCID: PMC2971189 DOI: 10.1107/S1600536809044535
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ag(C9H5N2O4)(C9H6N2O4)]·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2071 reflections |
| θ = 2.4–22.4° | |
| µ = 1.13 mm−1 | |
| β = 99.046 (1)° | Block, colourless |
| 0.31 × 0.23 × 0.19 mm | |
| Bruker APEXII area-detector diffractometer | 3675 independent reflections |
| Radiation source: fine-focus sealed tube | 2572 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 10329 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3675 reflections | (Δ/σ)max = 0.001 |
| 307 parameters | Δρmax = 0.52 e Å−3 |
| 18 restraints | Δρmin = −0.59 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Ag1 | 0.374338 (11) | 0.168833 (16) | 0.58373 (5) | 0.04290 (14) | |
| O1 | 0.36561 (10) | −0.26003 (15) | 0.5821 (5) | 0.0606 (10) | |
| H1 | 0.3710 | −0.3049 | 0.5832 | 0.073* | |
| O2 | 0.44076 (10) | −0.23159 (15) | 0.5698 (5) | 0.0547 (9) | |
| O3 | 0.45996 (10) | −0.11508 (16) | 0.3045 (4) | 0.0470 (8) | |
| H3 | 0.4863 | −0.1056 | 0.2688 | 0.056* | 0.50 |
| O4 | 0.50175 (10) | −0.08915 (16) | 0.5782 (4) | 0.0491 (8) | |
| H4 | 0.5006 | −0.0830 | 0.6940 | 0.059* | 0.50 |
| O5 | 0.30757 (10) | 0.53188 (16) | 0.6824 (5) | 0.0548 (9) | |
| O6 | 0.28554 (11) | 0.42025 (16) | 0.6978 (5) | 0.0580 (10) | |
| O7 | 0.37366 (11) | 0.60136 (15) | 0.6187 (5) | 0.0538 (9) | |
| H7 | 0.3493 | 0.5781 | 0.6386 | 0.065* | |
| O8 | 0.44651 (11) | 0.58811 (16) | 0.5706 (5) | 0.0612 (10) | |
| N1 | 0.33935 (11) | 0.07120 (16) | 0.6181 (5) | 0.0314 (8) | |
| N2 | 0.28969 (11) | −0.01398 (17) | 0.6799 (5) | 0.0338 (8) | |
| H2A | 0.2646 | −0.0338 | 0.7095 | 0.041* | |
| N3 | 0.41656 (11) | 0.25914 (16) | 0.5533 (5) | 0.0384 (9) | |
| N4 | 0.47918 (11) | 0.32435 (17) | 0.5099 (5) | 0.0395 (9) | |
| H4A | 0.5071 | 0.3347 | 0.4871 | 0.047* | |
| C1 | 0.29744 (13) | 0.0560 (2) | 0.6672 (6) | 0.0354 (10) | |
| H1A | 0.2757 | 0.0908 | 0.6905 | 0.043* | |
| C2 | 0.32928 (12) | −0.0490 (2) | 0.6369 (6) | 0.0287 (9) | |
| C3 | 0.36007 (13) | 0.00500 (19) | 0.5978 (6) | 0.0275 (9) | |
| C4 | 0.40427 (13) | −0.01206 (19) | 0.5503 (6) | 0.0288 (9) | |
| H4B | 0.4251 | 0.0237 | 0.5247 | 0.035* | |
| C5 | 0.41601 (13) | −0.0831 (2) | 0.5424 (6) | 0.0301 (9) | |
| C6 | 0.38460 (13) | −0.1378 (2) | 0.5819 (6) | 0.0293 (9) | |
| C7 | 0.34103 (14) | −0.1213 (2) | 0.6295 (6) | 0.0349 (10) | |
| H7A | 0.3202 | −0.1569 | 0.6557 | 0.042* | |
| C8 | 0.40022 (15) | −0.2145 (2) | 0.5758 (6) | 0.0366 (10) | |
| C9 | 0.46214 (15) | −0.0985 (2) | 0.4738 (7) | 0.0392 (11) | |
| C10 | 0.46025 (15) | 0.2587 (2) | 0.5131 (7) | 0.0428 (11) | |
| H10A | 0.4762 | 0.2170 | 0.4895 | 0.051* | |
| C11 | 0.44556 (13) | 0.3720 (2) | 0.5500 (6) | 0.0327 (10) | |
| C12 | 0.40613 (13) | 0.3312 (2) | 0.5766 (6) | 0.0327 (9) | |
| C13 | 0.36540 (13) | 0.3643 (2) | 0.6177 (6) | 0.0327 (10) | |
| H13A | 0.3396 | 0.3367 | 0.6393 | 0.039* | |
| C14 | 0.36314 (13) | 0.4380 (2) | 0.6266 (6) | 0.0321 (10) | |
| C15 | 0.40400 (14) | 0.47992 (19) | 0.5986 (6) | 0.0314 (9) | |
| C16 | 0.44451 (14) | 0.4463 (2) | 0.5622 (6) | 0.0352 (10) | |
| H16A | 0.4711 | 0.4732 | 0.5458 | 0.042* | |
| C17 | 0.40890 (16) | 0.5620 (2) | 0.5952 (6) | 0.0395 (11) | |
| C18 | 0.31614 (14) | 0.4648 (2) | 0.6704 (6) | 0.0399 (11) | |
| O1W | 0.2366 (4) | 0.1989 (7) | 0.851 (2) | 0.126 (5) | 0.38 |
| H1C | 0.2379 | 0.2042 | 0.9681 | 0.151* | 0.38 |
| H1D | 0.2255 | 0.1565 | 0.8423 | 0.151* | 0.38 |
| O2W | 0.2352 (4) | 0.2876 (6) | 0.5630 (19) | 0.108 (4) | 0.38 |
| H2C | 0.2495 | 0.3257 | 0.6052 | 0.129* | 0.38 |
| H2D | 0.2530 | 0.2509 | 0.5812 | 0.129* | 0.38 |
| O3W | 0.2637 (6) | 0.2800 (10) | 0.809 (3) | 0.110 (6) | 0.25 |
| H3C | 0.2702 | 0.3223 | 0.7767 | 0.131* | 0.25 |
| H3D | 0.2564 | 0.2647 | 0.9111 | 0.131* | 0.25 |
| Ag1 | 0.0433 (2) | 0.02077 (18) | 0.0675 (3) | −0.00497 (15) | 0.01755 (17) | 0.00033 (16) |
| O1 | 0.0401 (18) | 0.0188 (16) | 0.126 (3) | −0.0020 (13) | 0.0233 (19) | 0.0014 (17) |
| O2 | 0.0414 (18) | 0.0328 (18) | 0.096 (3) | 0.0092 (14) | 0.0283 (17) | 0.0062 (17) |
| O3 | 0.0345 (16) | 0.059 (2) | 0.051 (2) | −0.0025 (14) | 0.0147 (15) | −0.0074 (16) |
| O4 | 0.0297 (16) | 0.064 (2) | 0.054 (2) | −0.0008 (15) | 0.0076 (15) | 0.0002 (16) |
| O5 | 0.0422 (18) | 0.0341 (19) | 0.093 (3) | 0.0100 (14) | 0.0259 (18) | −0.0047 (17) |
| O6 | 0.0364 (17) | 0.0408 (19) | 0.104 (3) | −0.0013 (15) | 0.0317 (18) | −0.0021 (18) |
| O7 | 0.0478 (19) | 0.0226 (16) | 0.096 (3) | 0.0029 (14) | 0.0256 (19) | 0.0006 (16) |
| O8 | 0.049 (2) | 0.0314 (19) | 0.110 (3) | −0.0119 (15) | 0.032 (2) | −0.0032 (18) |
| N1 | 0.0261 (18) | 0.0219 (17) | 0.047 (2) | −0.0002 (14) | 0.0087 (15) | −0.0005 (15) |
| N2 | 0.0201 (16) | 0.033 (2) | 0.051 (2) | −0.0036 (14) | 0.0140 (15) | −0.0005 (16) |
| N3 | 0.0298 (18) | 0.0201 (18) | 0.068 (3) | 0.0007 (14) | 0.0167 (17) | 0.0010 (16) |
| N4 | 0.0279 (18) | 0.030 (2) | 0.066 (3) | 0.0014 (15) | 0.0215 (17) | 0.0003 (17) |
| C1 | 0.028 (2) | 0.028 (2) | 0.051 (3) | 0.0021 (18) | 0.008 (2) | −0.0022 (19) |
| C2 | 0.0202 (19) | 0.028 (2) | 0.039 (3) | −0.0009 (16) | 0.0099 (17) | −0.0025 (18) |
| C3 | 0.0240 (19) | 0.022 (2) | 0.037 (2) | −0.0045 (16) | 0.0071 (17) | 0.0005 (17) |
| C4 | 0.0220 (19) | 0.024 (2) | 0.042 (3) | −0.0034 (16) | 0.0110 (18) | 0.0015 (17) |
| C5 | 0.024 (2) | 0.030 (2) | 0.037 (3) | −0.0024 (17) | 0.0052 (17) | 0.0002 (18) |
| C6 | 0.031 (2) | 0.0189 (19) | 0.038 (3) | −0.0007 (16) | 0.0056 (19) | 0.0010 (17) |
| C7 | 0.032 (2) | 0.026 (2) | 0.049 (3) | −0.0042 (18) | 0.012 (2) | 0.0023 (19) |
| C8 | 0.035 (2) | 0.027 (2) | 0.052 (3) | 0.0037 (19) | 0.017 (2) | −0.0011 (19) |
| C9 | 0.034 (2) | 0.029 (2) | 0.057 (3) | 0.0048 (19) | 0.013 (2) | −0.001 (2) |
| C10 | 0.038 (2) | 0.026 (2) | 0.068 (3) | 0.0064 (19) | 0.018 (2) | −0.001 (2) |
| C11 | 0.028 (2) | 0.025 (2) | 0.047 (3) | −0.0020 (17) | 0.0123 (19) | 0.0020 (18) |
| C12 | 0.033 (2) | 0.022 (2) | 0.045 (3) | 0.0006 (18) | 0.0105 (18) | 0.0026 (19) |
| C13 | 0.028 (2) | 0.024 (2) | 0.049 (3) | −0.0010 (17) | 0.0154 (19) | 0.0035 (18) |
| C14 | 0.028 (2) | 0.028 (2) | 0.042 (3) | 0.0061 (17) | 0.0098 (18) | −0.0003 (18) |
| C15 | 0.033 (2) | 0.021 (2) | 0.042 (3) | −0.0025 (17) | 0.0095 (19) | 0.0004 (17) |
| C16 | 0.029 (2) | 0.026 (2) | 0.052 (3) | −0.0052 (17) | 0.013 (2) | 0.0035 (19) |
| C17 | 0.045 (3) | 0.029 (2) | 0.045 (3) | −0.003 (2) | 0.011 (2) | −0.001 (2) |
| C18 | 0.031 (2) | 0.035 (3) | 0.055 (3) | 0.001 (2) | 0.011 (2) | 0.000 (2) |
| O1W | 0.100 (7) | 0.111 (7) | 0.168 (9) | 0.017 (6) | 0.025 (7) | −0.013 (7) |
| O2W | 0.096 (7) | 0.071 (6) | 0.158 (9) | −0.017 (6) | 0.025 (6) | 0.000 (6) |
| O3W | 0.095 (9) | 0.102 (9) | 0.142 (10) | −0.019 (7) | 0.050 (8) | 0.029 (8) |
| Ag1—N3 | 2.100 (3) | C2—C3 | 1.393 (5) |
| Ag1—N1 | 2.108 (3) | C3—C4 | 1.393 (5) |
| O1—C8 | 1.307 (5) | C4—C5 | 1.369 (5) |
| O1—H1 | 0.8498 | C4—H4B | 0.9300 |
| O2—C8 | 1.205 (5) | C5—C6 | 1.415 (5) |
| O3—C9 | 1.254 (5) | C5—C9 | 1.503 (5) |
| O3—H3 | 0.8499 | C6—C7 | 1.374 (5) |
| O4—C9 | 1.267 (5) | C6—C8 | 1.500 (5) |
| O4—H4 | 0.8500 | C7—H7A | 0.9300 |
| O5—C18 | 1.280 (5) | C10—H10A | 0.9300 |
| O6—C18 | 1.242 (5) | C11—C16 | 1.388 (5) |
| O7—C17 | 1.277 (5) | C11—C12 | 1.394 (5) |
| O7—H7 | 0.8499 | C12—C13 | 1.387 (5) |
| O8—C17 | 1.215 (5) | C13—C14 | 1.378 (5) |
| N1—C1 | 1.329 (5) | C13—H13A | 0.9300 |
| N1—C3 | 1.385 (5) | C14—C15 | 1.442 (5) |
| N2—C1 | 1.328 (5) | C14—C18 | 1.508 (5) |
| N2—C2 | 1.380 (4) | C15—C16 | 1.375 (5) |
| N2—H2A | 0.8600 | C15—C17 | 1.536 (5) |
| N3—C10 | 1.322 (5) | C16—H16A | 0.9300 |
| N3—C12 | 1.391 (5) | O1W—H1C | 0.8500 |
| N4—C10 | 1.339 (5) | O1W—H1D | 0.8501 |
| N4—C11 | 1.370 (5) | O2W—H2C | 0.8501 |
| N4—H4A | 0.8600 | O2W—H2D | 0.8501 |
| C1—H1A | 0.9300 | O3W—H3C | 0.8496 |
| C2—C7 | 1.391 (5) | O3W—H3D | 0.8496 |
| N3—Ag1—N1 | 173.32 (12) | C2—C7—H7A | 121.3 |
| C8—O1—H1 | 120.1 | O2—C8—O1 | 124.2 (4) |
| C9—O3—H3 | 109.5 | O2—C8—C6 | 122.9 (4) |
| C9—O4—H4 | 115.8 | O1—C8—C6 | 112.9 (3) |
| C17—O7—H7 | 114.2 | O3—C9—O4 | 121.2 (4) |
| C1—N1—C3 | 104.7 (3) | O3—C9—C5 | 117.2 (4) |
| C1—N1—Ag1 | 132.6 (3) | O4—C9—C5 | 121.4 (4) |
| C3—N1—Ag1 | 122.6 (2) | N3—C10—N4 | 113.2 (3) |
| C1—N2—C2 | 107.4 (3) | N3—C10—H10A | 123.4 |
| C1—N2—H2A | 126.3 | N4—C10—H10A | 123.4 |
| C2—N2—H2A | 126.3 | N4—C11—C16 | 133.1 (4) |
| C10—N3—C12 | 105.0 (3) | N4—C11—C12 | 106.3 (3) |
| C10—N3—Ag1 | 126.3 (3) | C16—C11—C12 | 120.6 (3) |
| C12—N3—Ag1 | 128.6 (2) | C13—C12—N3 | 131.1 (3) |
| C10—N4—C11 | 107.0 (3) | C13—C12—C11 | 120.4 (4) |
| C10—N4—H4A | 126.5 | N3—C12—C11 | 108.5 (3) |
| C11—N4—H4A | 126.5 | C14—C13—C12 | 120.0 (4) |
| N2—C1—N1 | 113.2 (3) | C14—C13—H13A | 120.0 |
| N2—C1—H1A | 123.4 | C12—C13—H13A | 120.0 |
| N1—C1—H1A | 123.4 | C13—C14—C15 | 119.3 (3) |
| N2—C2—C7 | 132.6 (3) | C13—C14—C18 | 112.9 (3) |
| N2—C2—C3 | 105.5 (3) | C15—C14—C18 | 127.8 (4) |
| C7—C2—C3 | 121.9 (3) | C16—C15—C14 | 120.0 (4) |
| N1—C3—C2 | 109.3 (3) | C16—C15—C17 | 111.7 (3) |
| N1—C3—C4 | 130.2 (3) | C14—C15—C17 | 128.2 (3) |
| C2—C3—C4 | 120.5 (3) | C15—C16—C11 | 119.6 (3) |
| C5—C4—C3 | 117.8 (3) | C15—C16—H16A | 120.2 |
| C5—C4—H4B | 121.1 | C11—C16—H16A | 120.2 |
| C3—C4—H4B | 121.1 | O8—C17—O7 | 121.2 (4) |
| C4—C5—C6 | 121.5 (3) | O8—C17—C15 | 119.1 (4) |
| C4—C5—C9 | 115.5 (3) | O7—C17—C15 | 119.7 (4) |
| C6—C5—C9 | 122.9 (3) | O6—C18—O5 | 119.8 (4) |
| C7—C6—C5 | 120.9 (3) | O6—C18—C14 | 118.7 (4) |
| C7—C6—C8 | 120.3 (3) | O5—C18—C14 | 121.5 (4) |
| C5—C6—C8 | 118.8 (3) | H1C—O1W—H1D | 97.8 |
| C6—C7—C2 | 117.3 (3) | H2C—O2W—H2D | 112.1 |
| C6—C7—H7A | 121.3 | H3C—O3W—H3D | 130.0 |
| H··· | ||||
| O1—H1···O7i | 0.85 | 1.77 | 2.603 (4) | 168 |
| O3—H3···O3ii | 0.85 | 1.71 | 2.528 (5) | 162 |
| O4—H4···O4iii | 0.85 | 1.66 | 2.500 (6) | 168 |
| O7—H7···O5 | 0.85 | 1.54 | 2.389 (4) | 176 |
| N2—H2A···O6iv | 0.86 | 1.88 | 2.733 (4) | 173 |
| N4—H4A···O8v | 0.86 | 2.04 | 2.805 (4) | 148 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O7i | 0.85 | 1.77 | 2.603 (4) | 168 |
| O3—H3⋯O3ii | 0.85 | 1.71 | 2.528 (5) | 162 |
| O4—H4⋯O4iii | 0.85 | 1.66 | 2.500 (6) | 168 |
| O7—H7⋯O5 | 0.85 | 1.54 | 2.389 (4) | 176 |
| N2—H2 | 0.86 | 1.88 | 2.733 (4) | 173 |
| N4—H4 | 0.86 | 2.04 | 2.805 (4) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .