Literature DB >> 21582702

Diaqua-bis(2-methyl-1H-imidazol-3-ium-4,5-dicarboxyl-ato-κO,O')magnesium.

Yi Liang Li1, Xin Guo, Ju Xian Wang, Yu Cheng Wang.   

Abstract

The title compound, [Mg(C(6)H(5)N(2)O(4))(2)(H(2)O)(2)], was prepared by reaction of Mg(NO(3))(2) and 2-methyl-1H-imidazole-4,5-dicarboxylic acid under hydro-thermal conditions. The Mg(II) atom lies on an inversion centre and displays a distorted octa-hedral coordination geometry. An extended three-dimensional network of inter-molecular O-H⋯O and N-H⋯O hydrogen bonds stabilizes the crystal structure.

Entities:  

Year:  2009        PMID: 21582702      PMCID: PMC2969309          DOI: 10.1107/S160053680902176X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of metal complexes with N-heterocyclic carboxylic acids, see: Nie et al. (2007 ▶); Liang et al. (2002 ▶); Net et al. (1989 ▶); Zeng et al. (2008 ▶).

Experimental

Crystal data

[Mg(C6H5N2O4)2(H2O)2] M = 398.58 Triclinic, a = 4.943 (2) Å b = 8.750 (6) Å c = 9.621 (6) Å α = 109.18 (3)° β = 95.142 (17)° γ = 93.14 (2)° V = 389.9 (4) Å3 Z = 1 Mo Kα radiation μ = 0.18 mm−1 T = 292 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.948, T max = 0.967 4002 measured reflections 1767 independent reflections 1308 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.213 S = 1.19 1767 reflections 125 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902176X/rz2332sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902176X/rz2332Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(C6H5N2O4)2(H2O)2]Z = 1
Mr = 398.58F(000) = 206
Triclinic, P1Dx = 1.698 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.943 (2) ÅCell parameters from 1023 reflections
b = 8.750 (6) Åθ = 3.9–27.4°
c = 9.621 (6) ŵ = 0.18 mm1
α = 109.18 (3)°T = 292 K
β = 95.142 (17)°Block, colourless
γ = 93.14 (2)°0.30 × 0.25 × 0.20 mm
V = 389.9 (4) Å3
Rigaku SCXmini diffractometer1767 independent reflections
Radiation source: fine-focus sealed tube1308 reflections with I > 2σ(I)
graphiteRint = 0.046
Detector resolution: 13.6612 pixels mm-1θmax = 27.4°, θmin = 2.7°
ω scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.948, Tmax = 0.967l = −12→12
4002 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.213H-atom parameters constrained
S = 1.19w = 1/[σ2(Fo2) + (0.1078P)2 + 0.1465P] where P = (Fo2 + 2Fc2)/3
1767 reflections(Δ/σ)max < 0.001
125 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mg10.50001.00001.00000.0250 (4)
C10.3793 (6)0.7562 (4)0.6015 (3)0.0229 (7)
C20.5912 (6)0.8628 (4)0.6010 (3)0.0223 (7)
C30.5089 (7)0.6811 (4)0.3730 (4)0.0267 (7)
C40.5167 (9)0.5941 (5)0.2137 (4)0.0385 (9)
H4A0.41780.64920.15690.058*
H4B0.43470.48510.18850.058*
H4C0.70260.59150.19220.058*
C50.1991 (7)0.7356 (4)0.7122 (3)0.0240 (7)
C60.7466 (6)1.0094 (4)0.7140 (3)0.0233 (7)
N10.3343 (6)0.6454 (3)0.4585 (3)0.0268 (6)
H10.20070.55540.43650.040*
N20.6676 (6)0.8120 (3)0.4581 (3)0.0258 (6)
H20.79140.87190.42130.039*
O10.6722 (5)1.0584 (3)0.8405 (2)0.0319 (6)
O20.9380 (5)1.0749 (3)0.6734 (3)0.0380 (7)
O30.2358 (5)0.8310 (3)0.8427 (2)0.0312 (6)
O40.0166 (6)0.6225 (3)0.6638 (3)0.0410 (7)
O50.2236 (5)1.1757 (3)1.0012 (3)0.0336 (6)
H5B0.13541.15720.90700.050*
H5A0.09401.18361.05740.050*
U11U22U33U12U13U23
Mg10.0230 (8)0.0287 (8)0.0195 (8)−0.0077 (6)0.0050 (6)0.0042 (6)
C10.0240 (15)0.0222 (15)0.0209 (15)−0.0021 (12)0.0033 (12)0.0055 (12)
C20.0213 (14)0.0243 (15)0.0216 (15)−0.0001 (12)0.0050 (12)0.0078 (12)
C30.0294 (17)0.0240 (16)0.0261 (16)−0.0019 (13)0.0057 (13)0.0076 (13)
C40.054 (2)0.0332 (19)0.0227 (18)−0.0042 (17)0.0105 (16)0.0014 (15)
C50.0232 (15)0.0254 (15)0.0224 (15)−0.0035 (12)0.0057 (12)0.0067 (12)
C60.0230 (15)0.0259 (16)0.0206 (15)−0.0033 (12)0.0031 (12)0.0081 (13)
N10.0277 (14)0.0253 (14)0.0248 (14)−0.0064 (11)0.0068 (11)0.0052 (11)
N20.0284 (14)0.0268 (14)0.0228 (14)−0.0031 (11)0.0060 (11)0.0092 (11)
O10.0353 (13)0.0336 (14)0.0227 (12)−0.0103 (11)0.0076 (10)0.0049 (10)
O20.0346 (14)0.0432 (16)0.0330 (14)−0.0165 (12)0.0112 (11)0.0098 (12)
O30.0319 (13)0.0347 (14)0.0208 (12)−0.0114 (10)0.0069 (10)0.0022 (10)
O40.0408 (15)0.0392 (15)0.0323 (14)−0.0239 (12)0.0092 (12)0.0008 (11)
O50.0280 (13)0.0385 (14)0.0326 (13)−0.0015 (10)0.0091 (10)0.0090 (11)
Mg1—O1i2.010 (2)C3—C41.475 (5)
Mg1—O12.010 (2)C4—H4A0.9600
Mg1—O3i2.036 (2)C4—H4B0.9600
Mg1—O32.036 (2)C4—H4C0.9600
Mg1—O5i2.110 (3)C5—O41.238 (4)
Mg1—O52.110 (3)C5—O31.249 (4)
C1—C21.365 (4)C6—O21.237 (4)
C1—N11.388 (4)C6—O11.247 (4)
C1—C51.496 (4)N1—H10.9534
C2—N21.393 (4)N2—H20.9489
C2—C61.498 (5)O5—H5B0.9297
C3—N21.330 (4)O5—H5A0.8656
C3—N11.336 (4)
O1i—Mg1—O1180.000 (1)C3—C4—H4A109.5
O1i—Mg1—O3i89.92 (10)C3—C4—H4B109.5
O1—Mg1—O3i90.08 (10)H4A—C4—H4B109.5
O1i—Mg1—O390.08 (10)C3—C4—H4C109.5
O1—Mg1—O389.92 (10)H4A—C4—H4C109.5
O3i—Mg1—O3180.000 (1)H4B—C4—H4C109.5
O1i—Mg1—O5i87.90 (11)O4—C5—O3124.6 (3)
O1—Mg1—O5i92.10 (11)O4—C5—C1115.5 (3)
O3i—Mg1—O5i88.95 (11)O3—C5—C1119.9 (3)
O3—Mg1—O5i91.05 (11)O2—C6—O1124.7 (3)
O1i—Mg1—O592.10 (11)O2—C6—C2117.0 (3)
O1—Mg1—O587.90 (11)O1—C6—C2118.3 (3)
O3i—Mg1—O591.05 (11)C3—N1—C1110.7 (3)
O3—Mg1—O588.95 (11)C3—N1—H1129.8
O5i—Mg1—O5180.000 (1)C1—N1—H1119.3
C2—C1—N1105.8 (3)C3—N2—C2110.1 (3)
C2—C1—C5136.3 (3)C3—N2—H2123.8
N1—C1—C5117.9 (3)C2—N2—H2125.2
C1—C2—N2106.6 (3)C6—O1—Mg1147.0 (2)
C1—C2—C6135.2 (3)C5—O3—Mg1145.7 (2)
N2—C2—C6118.2 (3)Mg1—O5—H5B111.2
N2—C3—N1106.8 (3)Mg1—O5—H5A117.4
N2—C3—C4127.0 (3)H5B—O5—H5A104.9
N1—C3—C4126.2 (3)
N1—C1—C2—N2−0.3 (4)N1—C3—N2—C2−0.7 (4)
C5—C1—C2—N2−179.6 (4)C4—C3—N2—C2177.5 (4)
N1—C1—C2—C6−179.5 (3)C1—C2—N2—C30.7 (4)
C5—C1—C2—C61.2 (7)C6—C2—N2—C3−180.0 (3)
C2—C1—C5—O4176.8 (4)O2—C6—O1—Mg1−150.7 (3)
N1—C1—C5—O4−2.4 (5)C2—C6—O1—Mg130.6 (6)
C2—C1—C5—O3−2.0 (6)O3i—Mg1—O1—C6142.4 (4)
N1—C1—C5—O3178.8 (3)O3—Mg1—O1—C6−37.6 (4)
C1—C2—C6—O2177.8 (4)O5i—Mg1—O1—C653.4 (4)
N2—C2—C6—O2−1.3 (5)O5—Mg1—O1—C6−126.6 (4)
C1—C2—C6—O1−3.4 (6)O4—C5—O3—Mg1163.9 (3)
N2—C2—C6—O1177.5 (3)C1—C5—O3—Mg1−17.4 (6)
N2—C3—N1—C10.5 (4)O1i—Mg1—O3—C5−151.8 (4)
C4—C3—N1—C1−177.8 (3)O1—Mg1—O3—C528.2 (4)
C2—C1—N1—C3−0.1 (4)O5i—Mg1—O3—C5−63.9 (4)
C5—C1—N1—C3179.3 (3)O5—Mg1—O3—C5116.1 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4ii0.951.782.696 (4)161
N2—H2···O2iii0.951.812.727 (4)162
O5—H5B···O2iv0.932.233.155 (4)172
O5—H5B···O1iv0.932.362.961 (4)122
O5—H5A···O3v0.871.982.841 (4)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.951.782.696 (4)161
N2—H2⋯O2ii0.951.812.727 (4)162
O5—H5B⋯O2iii0.932.233.155 (4)172
O5—H5B⋯O1iii0.932.362.961 (4)122
O5—H5A⋯O3iv0.871.982.841 (4)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Jian-Zhong Zeng; Xiu-Guang Yi; Jun-Yue Lin; Shao-Ming Ying; Gan-Sheng Huang
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