Literature DB >> 21582653

Aqua-azido-{2,2'-[o-phenylenebis(nitrilo-methyl-idyne)]diphenolato}manganese(III) hemihydrate.

Xiutang Zhang, Peihai Wei, Bin Li, Chunyong Wu, Bo Hu.   

Abstract

In the title compound, [Mn(C(20)H(14)N(2)O(2))(N(3))(H(2)O)]·0.5H(2)O, the Mn(III) ion is chelated by the N,N',O,O'-tetra-dentate Schiff base ligand and further coordinated by one azide ion and one water mol-ecule in trans positions, resulting in a distorted fac-MnN(3)O(3) octa-hedral arrangement. The O atom of the uncoordinated water mol-ecule lies on a crystallographic twofold axis. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds help to establish the packing.

Entities:  

Year:  2009        PMID: 21582653      PMCID: PMC2969293          DOI: 10.1107/S1600536809020200

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to salicylaldehyde complexes, see: Alam et al. (2003 ▶); Zelewsky & von Knof (1999 ▶).

Experimental

Crystal data

[Mn(C20H14N2O2)(N3)(H2O)]·0.5H2O M = 438.33 Monoclinic, a = 25.100 (10) Å b = 11.478 (5) Å c = 12.599 (5) Å β = 94.175 (3)° V = 3620 (3) Å3 Z = 8 Mo Kα radiation μ = 0.77 mm−1 T = 293 K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.914, T max = 0.941 11927 measured reflections 3162 independent reflections 2371 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.086 S = 1.00 3162 reflections 280 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020200/hb2977sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020200/hb2977Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C20H14N2O2)(N3)(H2O)]·0.5H2OF(000) = 1808
Mr = 438.33Dx = 1.612 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -C 2ycCell parameters from 3162 reflections
a = 25.10 (1) Åθ = 3.0–25.0°
b = 11.478 (5) ŵ = 0.77 mm1
c = 12.599 (5) ÅT = 293 K
β = 94.175 (3)°Block, pink
V = 3620 (3) Å30.12 × 0.10 × 0.08 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer3162 independent reflections
Radiation source: fine-focus sealed tube2371 reflections with I > 2σ(I)
graphiteRint = 0.082
φ and ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −27→29
Tmin = 0.914, Tmax = 0.941k = −13→13
11927 measured reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.03P)2] where P = (Fo2 + 2Fc2)/3
3162 reflections(Δ/σ)max = 0.001
280 parametersΔρmax = 0.32 e Å3
4 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.204685 (15)0.09791 (3)0.87813 (3)0.00903 (13)
C10.11631 (10)0.2543 (2)0.90445 (18)0.0102 (6)
C20.09780 (10)0.3688 (2)0.90882 (19)0.0124 (6)
H20.12190.43010.90610.015*
C30.04451 (10)0.3928 (2)0.91706 (19)0.0156 (6)
H30.03320.46990.91960.019*
C40.00719 (10)0.3029 (2)0.9217 (2)0.0180 (6)
H4−0.02880.31970.92600.022*
C50.02444 (10)0.1897 (2)0.9198 (2)0.0161 (6)
H5−0.00020.12970.92380.019*
C60.07880 (10)0.1623 (2)0.91183 (18)0.0110 (6)
C70.09346 (10)0.0426 (2)0.91314 (18)0.0114 (6)
H70.0662−0.01150.91880.014*
C80.15275 (10)−0.1198 (2)0.91053 (18)0.0092 (6)
C90.11626 (10)−0.2052 (2)0.93648 (19)0.0123 (6)
H90.0819−0.18440.95250.015*
C100.13142 (10)−0.3207 (2)0.93819 (18)0.0123 (6)
H100.1071−0.37770.95530.015*
C110.18272 (10)−0.3529 (2)0.91454 (18)0.0124 (6)
H110.1925−0.43110.91570.015*
C120.21902 (10)−0.2690 (2)0.88938 (18)0.0109 (6)
H120.2533−0.29060.87360.013*
C130.20450 (10)−0.1518 (2)0.88751 (18)0.0096 (5)
C140.28922 (10)−0.0719 (2)0.84750 (19)0.0110 (6)
H140.3007−0.14800.83850.013*
C150.32741 (10)0.0188 (2)0.83746 (18)0.0111 (6)
C160.38034 (10)−0.0164 (2)0.82023 (18)0.0145 (6)
H160.3878−0.09540.81430.017*
C170.42059 (10)0.0627 (2)0.81212 (19)0.0155 (6)
H170.45480.03770.79980.019*
C180.40976 (10)0.1809 (2)0.82255 (18)0.0142 (6)
H180.43710.23500.81810.017*
C190.35893 (10)0.2184 (2)0.83938 (19)0.0136 (6)
H190.35250.29780.84620.016*
C200.31675 (10)0.1395 (2)0.84649 (18)0.0094 (6)
N10.23943 (8)−0.05699 (18)0.86829 (15)0.0098 (5)
N20.14151 (8)0.00196 (18)0.90708 (15)0.0092 (5)
N30.17896 (8)0.07150 (19)0.70029 (16)0.0131 (5)
N40.13255 (9)0.05323 (19)0.67637 (16)0.0136 (5)
N50.08768 (9)0.0341 (2)0.65186 (17)0.0234 (6)
O10.16772 (7)0.23708 (15)0.89293 (13)0.0127 (4)
O20.26797 (6)0.18073 (15)0.85790 (12)0.0113 (4)
O1W0.23229 (7)0.08568 (17)1.05761 (13)0.0138 (4)
O2W0.0000−0.0960 (3)0.75000.0383 (8)
H1W0.2366 (10)0.1525 (7)1.0796 (16)0.023 (9)*
H2W0.2189 (11)0.0413 (15)1.0991 (14)0.037 (10)*
H3W0.0224 (11)−0.056 (3)0.723 (3)0.064 (13)*
U11U22U33U12U13U23
Mn10.0082 (2)0.0069 (2)0.0122 (2)−0.00022 (17)0.00244 (16)−0.00015 (16)
C10.0133 (14)0.0136 (14)0.0037 (13)0.0011 (11)0.0004 (10)0.0013 (11)
C20.0163 (14)0.0085 (14)0.0124 (14)0.0000 (11)0.0008 (11)0.0017 (11)
C30.0190 (15)0.0117 (15)0.0162 (15)0.0046 (12)0.0017 (12)0.0029 (11)
C40.0105 (14)0.0172 (16)0.0271 (16)0.0050 (12)0.0059 (12)0.0031 (13)
C50.0130 (14)0.0117 (15)0.0239 (16)−0.0027 (11)0.0035 (12)0.0033 (12)
C60.0149 (14)0.0083 (14)0.0101 (14)0.0023 (11)0.0031 (11)0.0004 (11)
C70.0121 (14)0.0118 (15)0.0105 (14)−0.0045 (11)0.0024 (11)−0.0004 (11)
C80.0129 (14)0.0080 (14)0.0064 (13)−0.0001 (11)−0.0005 (10)−0.0019 (10)
C90.0119 (14)0.0114 (15)0.0138 (14)−0.0013 (11)0.0035 (11)−0.0016 (11)
C100.0159 (14)0.0119 (15)0.0092 (14)−0.0046 (11)0.0014 (11)0.0001 (11)
C110.0205 (15)0.0067 (14)0.0093 (13)0.0021 (11)−0.0028 (11)0.0002 (11)
C120.0129 (14)0.0145 (15)0.0052 (13)0.0043 (11)0.0005 (10)−0.0027 (10)
C130.0124 (14)0.0120 (14)0.0042 (13)−0.0028 (11)−0.0007 (10)−0.0015 (11)
C140.0142 (14)0.0106 (15)0.0082 (13)0.0035 (11)0.0011 (11)0.0006 (10)
C150.0128 (14)0.0144 (14)0.0062 (13)−0.0007 (11)0.0016 (10)0.0010 (11)
C160.0170 (15)0.0162 (15)0.0104 (14)0.0038 (12)0.0021 (11)0.0012 (11)
C170.0069 (14)0.0278 (17)0.0119 (14)0.0028 (12)0.0011 (11)0.0015 (12)
C180.0107 (14)0.0240 (17)0.0077 (14)−0.0048 (12)−0.0008 (11)0.0009 (12)
C190.0193 (15)0.0119 (15)0.0095 (14)−0.0023 (12)−0.0006 (11)−0.0023 (11)
C200.0082 (13)0.0175 (15)0.0026 (12)0.0006 (11)0.0005 (10)0.0020 (11)
N10.0135 (12)0.0086 (12)0.0073 (11)0.0005 (9)0.0014 (9)0.0004 (9)
N20.0118 (11)0.0070 (12)0.0088 (11)0.0010 (9)0.0018 (9)0.0002 (9)
N30.0097 (12)0.0190 (14)0.0108 (12)−0.0020 (9)0.0013 (9)0.0014 (9)
N40.0198 (14)0.0138 (13)0.0078 (12)0.0027 (10)0.0047 (10)0.0002 (9)
N50.0122 (13)0.0395 (17)0.0183 (13)0.0007 (12)−0.0002 (10)0.0000 (11)
O10.0099 (9)0.0074 (10)0.0213 (10)−0.0001 (7)0.0038 (7)−0.0005 (8)
O20.0114 (9)0.0097 (10)0.0133 (10)−0.0007 (8)0.0037 (7)0.0011 (8)
O1W0.0192 (11)0.0090 (11)0.0133 (10)−0.0039 (8)0.0027 (8)−0.0004 (9)
O2W0.025 (2)0.028 (2)0.063 (2)0.0000.0130 (18)0.000
Mn1—O11.8636 (18)C10—H100.9300
Mn1—O21.8844 (18)C11—C121.379 (3)
Mn1—N21.986 (2)C11—H110.9300
Mn1—N11.988 (2)C12—C131.393 (3)
Mn1—N32.306 (2)C12—H120.9300
Mn1—O1W2.321 (2)C13—N11.430 (3)
C1—O11.324 (3)C14—N11.307 (3)
C1—C21.397 (3)C14—C151.427 (3)
C1—C61.422 (3)C14—H140.9300
C2—C31.377 (3)C15—C201.418 (4)
C2—H20.9300C15—C161.420 (3)
C3—C41.398 (4)C16—C171.367 (4)
C3—H30.9300C16—H160.9300
C4—C51.371 (4)C17—C181.392 (4)
C4—H40.9300C17—H170.9300
C5—C61.411 (3)C18—C191.378 (3)
C5—H50.9300C18—H180.9300
C6—C71.422 (4)C19—C201.401 (3)
C7—N21.301 (3)C19—H190.9300
C7—H70.9300C20—O21.330 (3)
C8—C91.397 (3)N3—N41.200 (3)
C8—C131.401 (3)N4—N51.167 (3)
C8—N21.425 (3)O1W—H1W0.820 (11)
C9—C101.379 (4)O1W—H2W0.82 (2)
C9—H90.9300O2W—H3W0.82 (3)
C10—C111.393 (3)
O1—Mn1—O290.68 (8)C11—C10—H10119.7
O1—Mn1—N292.69 (8)C12—C11—C10120.0 (2)
O2—Mn1—N2175.37 (8)C12—C11—H11120.0
O1—Mn1—N1175.33 (8)C10—C11—H11120.0
O2—Mn1—N193.71 (8)C11—C12—C13120.1 (2)
N2—Mn1—N182.83 (9)C11—C12—H12119.9
O1—Mn1—N395.95 (8)C13—C12—H12119.9
O2—Mn1—N396.55 (7)C12—C13—C8119.7 (2)
N2—Mn1—N386.26 (8)C12—C13—N1125.1 (2)
N1—Mn1—N385.12 (8)C8—C13—N1115.1 (2)
O1—Mn1—O1W94.00 (7)N1—C14—C15125.5 (2)
O2—Mn1—O1W88.14 (7)N1—C14—H14117.2
N2—Mn1—O1W88.47 (7)C15—C14—H14117.2
N1—Mn1—O1W84.58 (7)C20—C15—C16118.3 (2)
N3—Mn1—O1W168.94 (7)C20—C15—C14125.0 (2)
O1—C1—C2118.3 (2)C16—C15—C14116.6 (2)
O1—C1—C6123.5 (2)C17—C16—C15121.8 (3)
C2—C1—C6118.2 (2)C17—C16—H16119.1
C3—C2—C1121.3 (2)C15—C16—H16119.1
C3—C2—H2119.4C16—C17—C18119.3 (2)
C1—C2—H2119.4C16—C17—H17120.3
C2—C3—C4120.9 (3)C18—C17—H17120.3
C2—C3—H3119.6C19—C18—C17120.6 (2)
C4—C3—H3119.6C19—C18—H18119.7
C5—C4—C3119.1 (2)C17—C18—H18119.7
C5—C4—H4120.5C18—C19—C20121.3 (3)
C3—C4—H4120.5C18—C19—H19119.3
C4—C5—C6121.4 (2)C20—C19—H19119.3
C4—C5—H5119.3O2—C20—C19118.9 (2)
C6—C5—H5119.3O2—C20—C15122.5 (2)
C5—C6—C1119.2 (2)C19—C20—C15118.6 (2)
C5—C6—C7117.7 (2)C14—N1—C13122.8 (2)
C1—C6—C7123.1 (2)C14—N1—Mn1124.04 (18)
N2—C7—C6125.9 (2)C13—N1—Mn1113.16 (16)
N2—C7—H7117.1C7—N2—C8122.2 (2)
C6—C7—H7117.1C7—N2—Mn1124.61 (18)
C9—C8—C13119.9 (2)C8—N2—Mn1112.96 (15)
C9—C8—N2124.3 (2)N4—N3—Mn1117.69 (16)
C13—C8—N2115.8 (2)N5—N4—N3178.8 (3)
C10—C9—C8119.6 (2)C1—O1—Mn1129.44 (16)
C10—C9—H9120.2C20—O2—Mn1128.82 (16)
C8—C9—H9120.2Mn1—O1W—H1W107.2 (17)
C9—C10—C11120.7 (2)Mn1—O1W—H2W123.5 (18)
C9—C10—H10119.7H1W—O1W—H2W114.6 (19)
D—H···AD—HH···AD···AD—H···A
O1W—H2W···N3i0.82 (2)2.12 (2)2.937 (3)176 (3)
O1W—H1W···O2ii0.82 (1)2.08 (1)2.885 (3)169 (2)
O2W—H3W···N50.82 (3)2.18 (3)3.000 (3)173 (4)
Table 1

Selected bond lengths (Å)

Mn1—O11.8636 (18)
Mn1—O21.8844 (18)
Mn1—N21.986 (2)
Mn1—N11.988 (2)
Mn1—N32.306 (2)
Mn1—O1W2.321 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯N3i0.82 (2)2.12 (2)2.937 (3)176 (3)
O1W—H1W⋯O2ii0.820 (11)2.076 (6)2.885 (3)169 (2)
O2W—H3W⋯N50.82 (3)2.18 (3)3.000 (3)173 (4)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Synthesis of a self-assembled molecular capsule that traps pyridine molecules by a combination of hydrogen bonding and copper(II) coordination.

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Journal:  Angew Chem Int Ed Engl       Date:  2003-04-29       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
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1.  Tetra-aqua-(5,5'-dimethyl-2,2'-bipyridine-κN,N')zinc(II) sulfate.

Authors:  Qing-Lan Zhao; Hui-Feng Bai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

2.  Aqua-bis(benzoato-κO)(5,5'-dimethyl-2,2'-bipyridine-κN,N')copper(II).

Authors:  Xi-Yan Dong; Xiaojie Xu; Lei Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  Dimeric (2-cyano-phenolato-κO){2,2'-[ethyl-enebis(nitrilo-methyl-idyne)]diphenolato-κO,N,N',O'}manganese(III) monohydrate.

Authors:  Youcef Zidane; Ali Ourari; Hénia Mousser; Abdelhamid Mousser
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09
  3 in total

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