Literature DB >> 21582562

2,5-Dibromo-pyridine.

Rawhi H Al-Far, Basem Fares Ali.   

Abstract

In the title compound, C(5)H(3)Br(2)N, C-H⋯N hydrogen-bonding inter-actions and Br⋯Br inter-actions [3.9418 (3) and 3.8986 (3) Å] connect the mol-ecules into planar sheets stacked perpendicular to the b axis. In addition, pyrid-yl-pyridyl inter-sheet π-π stacking inter-actions [centroid-centroid distance = 4.12 (1) Å] result in a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582562      PMCID: PMC2969055          DOI: 10.1107/S160053680900974X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen bonding, see: Desiraju (1997 ▶). For related structures, see: Al-Far & Ali (2007 ▶, 2008 ▶); Ali & Al-Far (2008 ▶); Ali et al. (2008a ▶,b ▶). For bond-length data, see: Allen et al. (1987 ▶). For theoretical analysis, see: Awwadi et al. (2006 ▶, 2007 ▶).

Experimental

Crystal data

C5H3Br2N M = 236.90 Orthorhombic, a = 6.1063 (4) Å b = 6.5442 (4) Å c = 15.8196 (9) Å V = 632.17 (7) Å3 Z = 4 Mo Kα radiation μ = 12.71 mm−1 T = 90 K 0.46 × 0.21 × 0.14 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: numerical (SADABS; Bruker, 2004 ▶) T min = 0.053, T max = 0.170 8997 measured reflections 996 independent reflections 887 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.054 S = 1.05 996 reflections 49 parameters H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.77 e Å−3 Data collection: SMART (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2006 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: XP (Bruker, 2004 ▶) and SHELXTL; software used to prepare material for publication: XCIF (Bruker, 2004 ▶) and SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680900974X/pv2146sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900974X/pv2146Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H3Br2NF(000) = 440
Mr = 236.90Dx = 2.489 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 5485 reflections
a = 6.1063 (4) Åθ = 2.6–30.0°
b = 6.5442 (4) ŵ = 12.71 mm1
c = 15.8196 (9) ÅT = 90 K
V = 632.17 (7) Å3Diamond, colourless
Z = 40.46 × 0.21 × 0.14 mm
Bruker SMART APEX diffractometer996 independent reflections
Radiation source: fine-focus sealed tube887 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 8.3 pixels mm-1θmax = 30.0°, θmin = 3.6°
ω scansh = −8→8
Absorption correction: numerical (SADABS; Bruker, 2004)k = −9→9
Tmin = 0.053, Tmax = 0.170l = −22→22
8997 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.054H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0364P)2 + 0.1337P] where P = (Fo2 + 2Fc2)/3
996 reflections(Δ/σ)max < 0.001
49 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.77 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br20.41023 (4)0.75000.171199 (12)0.01101 (9)
N10.4781 (3)0.7500−0.00105 (12)0.0077 (4)
Br50.98268 (4)0.7500−0.173378 (13)0.01214 (9)
C20.5860 (4)0.75000.07141 (12)0.0063 (4)
C30.8124 (3)0.75000.07962 (13)0.0089 (4)
H3A0.88080.75000.13360.011*
C40.9342 (4)0.75000.00590 (14)0.0088 (4)
H4A1.08970.75000.00770.011*
C50.8236 (4)0.7500−0.07079 (12)0.0074 (4)
C60.5958 (4)0.7500−0.07196 (12)0.0083 (4)
H6A0.52210.7500−0.12480.010*
U11U22U33U12U13U23
Br20.01285 (15)0.01709 (15)0.00310 (12)0.0000.00345 (7)0.000
N10.0081 (9)0.0110 (9)0.0041 (8)0.0000.0000 (6)0.000
Br50.01335 (15)0.01839 (15)0.00466 (13)0.0000.00480 (7)0.000
C20.0095 (11)0.0078 (10)0.0015 (8)0.0000.0012 (7)0.000
C30.0087 (10)0.0114 (10)0.0066 (9)0.000−0.0024 (8)0.000
C40.0067 (9)0.0114 (10)0.0084 (10)0.000−0.0018 (8)0.000
C50.0088 (10)0.0096 (10)0.0040 (9)0.0000.0026 (7)0.000
C60.0100 (11)0.0100 (11)0.0048 (9)0.000−0.0019 (7)0.000
Br2—C21.909 (2)C3—H3A0.9500
N1—C21.322 (3)C4—C51.389 (3)
N1—C61.332 (3)C4—H4A0.9500
Br5—C51.891 (2)C5—C61.391 (3)
C2—C31.389 (3)C6—H6A0.9500
C3—C41.383 (3)
C2—N1—C6117.43 (19)C3—C4—H4A120.8
N1—C2—C3125.27 (19)C5—C4—H4A120.8
N1—C2—Br2115.88 (16)C4—C5—C6119.87 (19)
C3—C2—Br2118.85 (15)C4—C5—Br5119.98 (17)
C4—C3—C2117.15 (19)C6—C5—Br5120.15 (16)
C4—C3—H3A121.4N1—C6—C5121.91 (19)
C2—C3—H3A121.4N1—C6—H6A119.0
C3—C4—C5118.38 (19)C5—C6—H6A119.0
C6—N1—C2—C30.0C3—C4—C5—C60.0
C6—N1—C2—Br2180.0C3—C4—C5—Br5180.0
N1—C2—C3—C40.0C2—N1—C6—C50.0
Br2—C2—C3—C4180.0C4—C5—C6—N10.0
C2—C3—C4—C50.0Br5—C5—C6—N1180.0
D—H···AD—HH···AD···AD—H···A
C4—H4A···N1i0.952.383.323 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯N1i0.952.383.323 (3)175

Symmetry code: (i) .

  5 in total

1.  The nature of halogen...halogen synthons: crystallographic and theoretical studies.

Authors:  Firas F Awwadi; Roger D Willett; Kirk A Peterson; Brendan Twamley
Journal:  Chemistry       Date:  2006-12-04       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The nature of halogen...halide synthons: theoretical and crystallographic studies.

Authors:  Firas F Awwadi; Roger D Willett; Kirk A Peterson; Brendan Twamley
Journal:  J Phys Chem A       Date:  2007-03-08       Impact factor: 2.781

4.  3-Ammonio-pyridinium tetra-bromido-mercurate(II) monohydrate.

Authors:  Basem Fares Ali; Rawhi H Al-Far; Salim F Haddad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

5.  Bis(2,6-dimethyl-pyridinium) tetra-bromido-cobaltate(II).

Authors:  Basem Fares Ali; Rawhi H Al-Far; Salim F Haddad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20
  5 in total

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