Literature DB >> 21582477

Bis(2-amino-thia-zolium) succinate succinic acid.

Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.   

Abstract

In the title compound, 2C(3)H(5)N(2)S(+)·C(4)H(4)O(4) (2-)·C(4)H(6)O(4), the thia-zolium ring is almost planar, with the maximum deviation from planarity being 0.0056 (8) Å for the C atom carrying the amine substituent. The N atom of the 2-amino-thia-zole mol-ecule is protonated. Both the anion and the acid lie across inversion centres. The crystal packing is consolidated by inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. Mol-ecules are stacked down the b axis.

Entities:  

Year:  2009        PMID: 21582477      PMCID: PMC2968937          DOI: 10.1107/S1600536809007004

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 2-amino­thia­zole, see: Caranoni & Reboul (1982 ▶). For applications of 2-amino­thia­zole, see: Saarnivaara & Matilla (1974 ▶); Windholz (2001 ▶). For the structure of succinic acid, see: Gopalan et al. (2000 ▶); Leviel et al. (1981 ▶). For applications of succinic acid, see: Sauer et al. (2008 ▶); Song & Lee (2006 ▶); Zeikus et al. (1999 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

2C3H5N2S+·C4H4O4 2−·C4H6O4 M = 436.46 Monoclinic, a = 10.1680 (2) Å b = 5.1012 (1) Å c = 18.3850 (4) Å β = 105.961 (1)° V = 916.85 (3) Å3 Z = 2 Mo Kα radiation μ = 0.34 mm−1 T = 100 K 0.58 × 0.42 × 0.32 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.826, T max = 0.897 16689 measured reflections 3691 independent reflections 3442 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.077 S = 1.04 3691 reflections 167 parameters All H-atom parameters refined Δρmax = 0.45 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007004/sj2582sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007004/sj2582Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C3H5N2S+·C4H4O42·C4H6O4F(000) = 456
Mr = 436.46Dx = 1.581 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9994 reflections
a = 10.1680 (2) Åθ = 2.3–40.1°
b = 5.1012 (1) ŵ = 0.34 mm1
c = 18.3850 (4) ÅT = 100 K
β = 105.961 (1)°Block, yellow
V = 916.85 (3) Å30.58 × 0.42 × 0.32 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer3691 independent reflections
Radiation source: fine-focus sealed tube3442 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 34.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −16→16
Tmin = 0.826, Tmax = 0.897k = −7→7
16689 measured reflectionsl = −28→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: difference Fourier map
wR(F2) = 0.077All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0423P)2 + 0.2556P] where P = (Fo2 + 2Fc2)/3
3691 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.398521 (18)0.38496 (4)0.154349 (10)0.01603 (6)
O10.64045 (5)0.89655 (11)0.12963 (3)0.01367 (10)
O20.77343 (5)1.19344 (12)0.09559 (3)0.01562 (10)
O30.80012 (6)0.57645 (12)0.00894 (3)0.01703 (11)
O40.99583 (6)0.66022 (12)0.09808 (3)0.01646 (11)
N10.52407 (6)0.60443 (12)0.27794 (3)0.01361 (11)
N20.63526 (6)0.22575 (14)0.25269 (4)0.01565 (12)
C10.32820 (7)0.66562 (16)0.18253 (4)0.01749 (13)
C20.40776 (7)0.75502 (15)0.24905 (4)0.01599 (13)
C30.53433 (7)0.39842 (14)0.23509 (4)0.01261 (12)
C40.66461 (6)1.05440 (14)0.08264 (4)0.01101 (11)
C50.56100 (7)1.09079 (14)0.00653 (4)0.01307 (12)
C60.91584 (7)0.70771 (13)0.03682 (4)0.01173 (11)
C70.93722 (7)0.91684 (14)−0.01673 (4)0.01291 (12)
H10.2400 (13)0.731 (3)0.1506 (7)0.027 (3)*
H20.3948 (13)0.900 (2)0.2779 (7)0.023 (3)*
H7A0.8557 (13)1.025 (3)−0.0314 (7)0.023 (3)*
H7B0.9449 (13)0.826 (3)−0.0630 (7)0.025 (3)*
H1N20.7022 (15)0.248 (3)0.2933 (8)0.035 (4)*
H2N20.6384 (13)0.100 (3)0.2197 (7)0.025 (3)*
H1C50.6093 (14)1.070 (3)−0.0333 (8)0.030 (3)*
H2C50.5330 (13)1.280 (3)0.0047 (8)0.030 (3)*
H1N10.5877 (14)0.640 (3)0.3188 (8)0.031 (3)*
H1O30.7940 (17)0.447 (4)0.0401 (9)0.052 (5)*
U11U22U33U12U13U23
S10.01505 (8)0.01672 (9)0.01227 (8)−0.00239 (5)−0.00303 (6)0.00025 (5)
O10.0141 (2)0.0152 (2)0.0103 (2)−0.00308 (17)0.00095 (16)0.00264 (16)
O20.0127 (2)0.0175 (2)0.0136 (2)−0.00582 (18)−0.00159 (17)0.00353 (18)
O30.0150 (2)0.0181 (3)0.0151 (2)−0.00693 (18)−0.00061 (18)0.00485 (19)
O40.0145 (2)0.0178 (2)0.0146 (2)−0.00236 (18)−0.00011 (18)0.00380 (19)
N10.0128 (2)0.0147 (3)0.0116 (2)0.00017 (19)0.00047 (19)−0.00062 (19)
N20.0141 (2)0.0176 (3)0.0128 (2)0.0022 (2)−0.0003 (2)−0.0030 (2)
C10.0137 (3)0.0171 (3)0.0189 (3)−0.0001 (2)−0.0001 (2)0.0044 (3)
C20.0141 (3)0.0152 (3)0.0179 (3)0.0014 (2)0.0031 (2)0.0022 (2)
C30.0119 (3)0.0143 (3)0.0102 (2)−0.0016 (2)0.0008 (2)0.0004 (2)
C40.0106 (2)0.0116 (3)0.0097 (2)−0.0009 (2)0.00098 (19)0.0002 (2)
C50.0115 (2)0.0153 (3)0.0101 (2)−0.0035 (2)−0.0009 (2)0.0027 (2)
C60.0113 (2)0.0111 (3)0.0127 (3)−0.0006 (2)0.0032 (2)0.0002 (2)
C70.0129 (3)0.0129 (3)0.0122 (3)−0.0022 (2)0.0023 (2)0.0018 (2)
S1—C31.7285 (7)N2—H2N20.888 (13)
S1—C11.7416 (9)C1—C21.3468 (11)
O1—C41.2538 (8)C1—H10.986 (13)
O2—C41.2802 (8)C2—H20.941 (13)
O3—C61.3281 (8)C4—C51.5139 (9)
O3—H1O30.887 (18)C5—C5i1.5135 (14)
O4—C61.2185 (8)C5—H1C50.993 (14)
N1—C31.3346 (9)C5—H2C51.003 (14)
N1—C21.3877 (9)C6—C71.5075 (10)
N1—H1N10.864 (14)C7—C7ii1.5153 (14)
N2—C31.3233 (9)C7—H7A0.970 (13)
N2—H1N20.868 (15)C7—H7B0.989 (13)
C3—S1—C190.47 (3)O1—C4—C5119.82 (6)
C6—O3—H1O3109.7 (10)O2—C4—C5116.75 (6)
C3—N1—C2113.99 (6)C5i—C5—C4113.78 (7)
C3—N1—H1N1121.0 (9)C5i—C5—H1C5111.6 (8)
C2—N1—H1N1125.0 (9)C4—C5—H1C5108.0 (8)
C3—N2—H1N2119.6 (10)C5i—C5—H2C5111.7 (8)
C3—N2—H2N2118.9 (8)C4—C5—H2C5105.5 (8)
H1N2—N2—H2N2121.0 (13)H1C5—C5—H2C5105.7 (11)
C2—C1—S1110.81 (6)O4—C6—O3123.50 (6)
C2—C1—H1130.3 (8)O4—C6—C7124.39 (6)
S1—C1—H1118.9 (8)O3—C6—C7112.10 (6)
C1—C2—N1113.33 (7)C6—C7—C7ii112.82 (7)
C1—C2—H2129.5 (8)C6—C7—H7A108.6 (7)
N1—C2—H2117.2 (8)C7ii—C7—H7A110.8 (8)
N2—C3—N1124.12 (6)C6—C7—H7B106.9 (8)
N2—C3—S1124.49 (5)C7ii—C7—H7B110.7 (7)
N1—C3—S1111.38 (5)H7A—C7—H7B106.8 (10)
O1—C4—O2123.42 (6)
C3—S1—C1—C20.33 (6)C1—S1—C3—N1−0.78 (6)
S1—C1—C2—N10.18 (9)O1—C4—C5—C5i−4.29 (11)
C3—N1—C2—C1−0.80 (9)O2—C4—C5—C5i176.67 (8)
C2—N1—C3—N2−178.46 (7)O4—C6—C7—C7ii−5.84 (12)
C2—N1—C3—S11.04 (8)O3—C6—C7—C7ii175.31 (7)
C1—S1—C3—N2178.72 (7)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1iii0.868 (15)1.974 (15)2.8156 (9)163.0 (14)
N2—H2N2···O1iv0.889 (14)1.959 (13)2.8297 (9)165.7 (13)
N1—H1N1···O2iii0.865 (14)1.823 (14)2.6868 (8)176.2 (15)
O3—H1O3···O2iv0.888 (19)1.696 (19)2.5820 (8)176.5 (19)
C1—H1···O4v0.985 (13)2.431 (14)3.3086 (10)148.2 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.868 (15)1.974 (15)2.8156 (9)163.0 (14)
N2—H2N2⋯O1ii0.889 (14)1.959 (13)2.8297 (9)165.7 (13)
N1—H1N1⋯O2i0.865 (14)1.823 (14)2.6868 (8)176.2 (15)
O3—H1O3⋯O2ii0.888 (19)1.696 (19)2.5820 (8)176.5 (19)
C1—H1⋯O4iii0.985 (13)2.431 (14)3.3086 (10)148.2 (12)

Symmetry codes: (i) ; (ii) ; (iii) .

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