| Literature DB >> 21582477 |
Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.
Abstract
In the title compound, 2C(3)H(5)N(2)S(+)·C(4)H(4)O(4) (2-)·C(4)H(6)O(4), the thia-zolium ring is almost planar, with the maximum deviation from planarity being 0.0056 (8) Å for the C atom carrying the amine substituent. The N atom of the 2-amino-thia-zole mol-ecule is protonated. Both the anion and the acid lie across inversion centres. The crystal packing is consolidated by inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. Mol-ecules are stacked down the b axis.Entities:
Year: 2009 PMID: 21582477 PMCID: PMC2968937 DOI: 10.1107/S1600536809007004
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C3H5N2S+·C4H4O42−·C4H6O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9994 reflections |
| θ = 2.3–40.1° | |
| µ = 0.34 mm−1 | |
| β = 105.961 (1)° | Block, yellow |
| 0.58 × 0.42 × 0.32 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3691 independent reflections |
| Radiation source: fine-focus sealed tube | 3442 reflections with |
| graphite | |
| φ and ω scans | θmax = 34.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 16689 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| All H-atom parameters refined | |
| 3691 reflections | (Δ/σ)max = 0.001 |
| 167 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.398521 (18) | 0.38496 (4) | 0.154349 (10) | 0.01603 (6) | |
| O1 | 0.64045 (5) | 0.89655 (11) | 0.12963 (3) | 0.01367 (10) | |
| O2 | 0.77343 (5) | 1.19344 (12) | 0.09559 (3) | 0.01562 (10) | |
| O3 | 0.80012 (6) | 0.57645 (12) | 0.00894 (3) | 0.01703 (11) | |
| O4 | 0.99583 (6) | 0.66022 (12) | 0.09808 (3) | 0.01646 (11) | |
| N1 | 0.52407 (6) | 0.60443 (12) | 0.27794 (3) | 0.01361 (11) | |
| N2 | 0.63526 (6) | 0.22575 (14) | 0.25269 (4) | 0.01565 (12) | |
| C1 | 0.32820 (7) | 0.66562 (16) | 0.18253 (4) | 0.01749 (13) | |
| C2 | 0.40776 (7) | 0.75502 (15) | 0.24905 (4) | 0.01599 (13) | |
| C3 | 0.53433 (7) | 0.39842 (14) | 0.23509 (4) | 0.01261 (12) | |
| C4 | 0.66461 (6) | 1.05440 (14) | 0.08264 (4) | 0.01101 (11) | |
| C5 | 0.56100 (7) | 1.09079 (14) | 0.00653 (4) | 0.01307 (12) | |
| C6 | 0.91584 (7) | 0.70771 (13) | 0.03682 (4) | 0.01173 (11) | |
| C7 | 0.93722 (7) | 0.91684 (14) | −0.01673 (4) | 0.01291 (12) | |
| H1 | 0.2400 (13) | 0.731 (3) | 0.1506 (7) | 0.027 (3)* | |
| H2 | 0.3948 (13) | 0.900 (2) | 0.2779 (7) | 0.023 (3)* | |
| H7A | 0.8557 (13) | 1.025 (3) | −0.0314 (7) | 0.023 (3)* | |
| H7B | 0.9449 (13) | 0.826 (3) | −0.0630 (7) | 0.025 (3)* | |
| H1N2 | 0.7022 (15) | 0.248 (3) | 0.2933 (8) | 0.035 (4)* | |
| H2N2 | 0.6384 (13) | 0.100 (3) | 0.2197 (7) | 0.025 (3)* | |
| H1C5 | 0.6093 (14) | 1.070 (3) | −0.0333 (8) | 0.030 (3)* | |
| H2C5 | 0.5330 (13) | 1.280 (3) | 0.0047 (8) | 0.030 (3)* | |
| H1N1 | 0.5877 (14) | 0.640 (3) | 0.3188 (8) | 0.031 (3)* | |
| H1O3 | 0.7940 (17) | 0.447 (4) | 0.0401 (9) | 0.052 (5)* |
| S1 | 0.01505 (8) | 0.01672 (9) | 0.01227 (8) | −0.00239 (5) | −0.00303 (6) | 0.00025 (5) |
| O1 | 0.0141 (2) | 0.0152 (2) | 0.0103 (2) | −0.00308 (17) | 0.00095 (16) | 0.00264 (16) |
| O2 | 0.0127 (2) | 0.0175 (2) | 0.0136 (2) | −0.00582 (18) | −0.00159 (17) | 0.00353 (18) |
| O3 | 0.0150 (2) | 0.0181 (3) | 0.0151 (2) | −0.00693 (18) | −0.00061 (18) | 0.00485 (19) |
| O4 | 0.0145 (2) | 0.0178 (2) | 0.0146 (2) | −0.00236 (18) | −0.00011 (18) | 0.00380 (19) |
| N1 | 0.0128 (2) | 0.0147 (3) | 0.0116 (2) | 0.00017 (19) | 0.00047 (19) | −0.00062 (19) |
| N2 | 0.0141 (2) | 0.0176 (3) | 0.0128 (2) | 0.0022 (2) | −0.0003 (2) | −0.0030 (2) |
| C1 | 0.0137 (3) | 0.0171 (3) | 0.0189 (3) | −0.0001 (2) | −0.0001 (2) | 0.0044 (3) |
| C2 | 0.0141 (3) | 0.0152 (3) | 0.0179 (3) | 0.0014 (2) | 0.0031 (2) | 0.0022 (2) |
| C3 | 0.0119 (3) | 0.0143 (3) | 0.0102 (2) | −0.0016 (2) | 0.0008 (2) | 0.0004 (2) |
| C4 | 0.0106 (2) | 0.0116 (3) | 0.0097 (2) | −0.0009 (2) | 0.00098 (19) | 0.0002 (2) |
| C5 | 0.0115 (2) | 0.0153 (3) | 0.0101 (2) | −0.0035 (2) | −0.0009 (2) | 0.0027 (2) |
| C6 | 0.0113 (2) | 0.0111 (3) | 0.0127 (3) | −0.0006 (2) | 0.0032 (2) | 0.0002 (2) |
| C7 | 0.0129 (3) | 0.0129 (3) | 0.0122 (3) | −0.0022 (2) | 0.0023 (2) | 0.0018 (2) |
| S1—C3 | 1.7285 (7) | N2—H2N2 | 0.888 (13) |
| S1—C1 | 1.7416 (9) | C1—C2 | 1.3468 (11) |
| O1—C4 | 1.2538 (8) | C1—H1 | 0.986 (13) |
| O2—C4 | 1.2802 (8) | C2—H2 | 0.941 (13) |
| O3—C6 | 1.3281 (8) | C4—C5 | 1.5139 (9) |
| O3—H1O3 | 0.887 (18) | C5—C5i | 1.5135 (14) |
| O4—C6 | 1.2185 (8) | C5—H1C5 | 0.993 (14) |
| N1—C3 | 1.3346 (9) | C5—H2C5 | 1.003 (14) |
| N1—C2 | 1.3877 (9) | C6—C7 | 1.5075 (10) |
| N1—H1N1 | 0.864 (14) | C7—C7ii | 1.5153 (14) |
| N2—C3 | 1.3233 (9) | C7—H7A | 0.970 (13) |
| N2—H1N2 | 0.868 (15) | C7—H7B | 0.989 (13) |
| C3—S1—C1 | 90.47 (3) | O1—C4—C5 | 119.82 (6) |
| C6—O3—H1O3 | 109.7 (10) | O2—C4—C5 | 116.75 (6) |
| C3—N1—C2 | 113.99 (6) | C5i—C5—C4 | 113.78 (7) |
| C3—N1—H1N1 | 121.0 (9) | C5i—C5—H1C5 | 111.6 (8) |
| C2—N1—H1N1 | 125.0 (9) | C4—C5—H1C5 | 108.0 (8) |
| C3—N2—H1N2 | 119.6 (10) | C5i—C5—H2C5 | 111.7 (8) |
| C3—N2—H2N2 | 118.9 (8) | C4—C5—H2C5 | 105.5 (8) |
| H1N2—N2—H2N2 | 121.0 (13) | H1C5—C5—H2C5 | 105.7 (11) |
| C2—C1—S1 | 110.81 (6) | O4—C6—O3 | 123.50 (6) |
| C2—C1—H1 | 130.3 (8) | O4—C6—C7 | 124.39 (6) |
| S1—C1—H1 | 118.9 (8) | O3—C6—C7 | 112.10 (6) |
| C1—C2—N1 | 113.33 (7) | C6—C7—C7ii | 112.82 (7) |
| C1—C2—H2 | 129.5 (8) | C6—C7—H7A | 108.6 (7) |
| N1—C2—H2 | 117.2 (8) | C7ii—C7—H7A | 110.8 (8) |
| N2—C3—N1 | 124.12 (6) | C6—C7—H7B | 106.9 (8) |
| N2—C3—S1 | 124.49 (5) | C7ii—C7—H7B | 110.7 (7) |
| N1—C3—S1 | 111.38 (5) | H7A—C7—H7B | 106.8 (10) |
| O1—C4—O2 | 123.42 (6) | ||
| C3—S1—C1—C2 | 0.33 (6) | C1—S1—C3—N1 | −0.78 (6) |
| S1—C1—C2—N1 | 0.18 (9) | O1—C4—C5—C5i | −4.29 (11) |
| C3—N1—C2—C1 | −0.80 (9) | O2—C4—C5—C5i | 176.67 (8) |
| C2—N1—C3—N2 | −178.46 (7) | O4—C6—C7—C7ii | −5.84 (12) |
| C2—N1—C3—S1 | 1.04 (8) | O3—C6—C7—C7ii | 175.31 (7) |
| C1—S1—C3—N2 | 178.72 (7) |
| H··· | ||||
| N2—H1N2···O1iii | 0.868 (15) | 1.974 (15) | 2.8156 (9) | 163.0 (14) |
| N2—H2N2···O1iv | 0.889 (14) | 1.959 (13) | 2.8297 (9) | 165.7 (13) |
| N1—H1N1···O2iii | 0.865 (14) | 1.823 (14) | 2.6868 (8) | 176.2 (15) |
| O3—H1O3···O2iv | 0.888 (19) | 1.696 (19) | 2.5820 (8) | 176.5 (19) |
| C1—H1···O4v | 0.985 (13) | 2.431 (14) | 3.3086 (10) | 148.2 (12) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.868 (15) | 1.974 (15) | 2.8156 (9) | 163.0 (14) |
| N2—H2 | 0.889 (14) | 1.959 (13) | 2.8297 (9) | 165.7 (13) |
| N1—H1 | 0.865 (14) | 1.823 (14) | 2.6868 (8) | 176.2 (15) |
| O3—H1 | 0.888 (19) | 1.696 (19) | 2.5820 (8) | 176.5 (19) |
| C1—H1⋯O4iii | 0.985 (13) | 2.431 (14) | 3.3086 (10) | 148.2 (12) |
Symmetry codes: (i) ; (ii) ; (iii) .