Literature DB >> 21582469

6,8-Dihydr-oxy-3-methyl-isocoumarin.

Chang-Lun Shao, Lei Han, Chun-Yuan Li, Zhen Liu, Chang-Yun Wang.   

Abstract

The title compound, C(10)H(8)O(4), was isolated from the fermentation culture of the endophytic fungus Cephalo-sporium sp. In the crystal structure, mol-ecules are connected into a one-dimensional chain along [101] by inter-molecular O-H⋯O hydrogen bonds involving the hydroxyl and carbonyl functionalities. The chains are linked by non-classical C-H⋯O inter-actions, forming extended two-dimensional layers approximately parallel to (11).

Entities:  

Year:  2009        PMID: 21582469      PMCID: PMC2968904          DOI: 10.1107/S1600536809008083

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For new bioactive secondary metabolites from marine fungi, see: Shao et al. (2007 ▶). For the investigation of an endophytic strain Cephalosporium sp., see: Wei et al. (2008 ▶); Hemingway et al. (1977 ▶); Kendall et al. (1989 ▶). For crystal structures with non-classical C—H⋯O inter­actions, see: Nangia (2002 ▶).

Experimental

Crystal data

C10H8O4 M = 192.16 Monoclinic, a = 3.8201 (7) Å b = 15.710 (3) Å c = 14.196 (2) Å β = 92.668 (2)° V = 851.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 291 K 0.27 × 0.20 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.969, T max = 0.978 4781 measured reflections 1586 independent reflections 1272 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.04 1586 reflections 131 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick 2008 ▶); molecular graphics: SHELXTL (Sheldrick 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008083/bh2219sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008083/bh2219Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8O4F(000) = 400
Mr = 192.16Dx = 1.500 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1738 reflections
a = 3.8201 (7) Åθ = 2.6–25.5°
b = 15.710 (3) ŵ = 0.12 mm1
c = 14.196 (2) ÅT = 291 K
β = 92.668 (2)°Block, yellow
V = 851.1 (3) Å30.27 × 0.20 × 0.19 mm
Z = 4
Bruker APEXII CCD diffractometer1586 independent reflections
Radiation source: fine-focus sealed tube1272 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −4→4
Tmin = 0.969, Tmax = 0.978k = −19→13
4781 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0441P)2 + 0.1957P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1586 reflectionsΔρmax = 0.18 e Å3
131 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.015 (3)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O10.3482 (3)0.32453 (7)0.81217 (7)0.0451 (3)
O20.3544 (3)0.19366 (7)0.75748 (8)0.0572 (4)
O30.0718 (3)0.15766 (7)0.58873 (8)0.0552 (4)
H30.17090.14760.64000.083*
O4−0.4021 (3)0.39231 (7)0.41364 (7)0.0487 (3)
H4−0.45140.35410.37590.073*
C10.3853 (4)0.45742 (12)0.89102 (11)0.0516 (4)
H1A0.31480.51600.88590.077*
H1B0.63590.45420.89870.077*
H1C0.28190.43210.94460.077*
C20.2659 (4)0.41080 (10)0.80372 (10)0.0395 (4)
C30.1028 (4)0.44079 (10)0.72629 (10)0.0379 (4)
H3A0.05050.49850.72240.046*
C40.0042 (3)0.38590 (9)0.64774 (9)0.0318 (3)
C5−0.1641 (4)0.41528 (9)0.56587 (10)0.0355 (3)
H5−0.22300.47250.55980.043*
C6−0.2453 (4)0.35866 (10)0.49244 (10)0.0354 (3)
C7−0.1659 (4)0.27235 (9)0.50066 (10)0.0378 (4)
H7−0.22350.23540.45120.045*
C8−0.0016 (4)0.24192 (9)0.58233 (10)0.0368 (3)
C90.0880 (4)0.29837 (9)0.65755 (9)0.0337 (3)
C100.2651 (4)0.26818 (10)0.74166 (10)0.0401 (4)
U11U22U33U12U13U23
O10.0531 (7)0.0503 (7)0.0308 (5)0.0018 (5)−0.0102 (5)−0.0008 (5)
O20.0802 (9)0.0448 (7)0.0447 (7)0.0086 (6)−0.0182 (6)0.0060 (5)
O30.0804 (9)0.0330 (6)0.0503 (7)0.0065 (5)−0.0162 (6)−0.0011 (5)
O40.0677 (8)0.0425 (6)0.0342 (6)0.0033 (5)−0.0174 (5)−0.0004 (5)
C10.0488 (10)0.0661 (11)0.0390 (9)−0.0024 (8)−0.0060 (7)−0.0131 (8)
C20.0382 (8)0.0459 (9)0.0344 (8)−0.0026 (7)0.0008 (6)−0.0058 (6)
C30.0414 (8)0.0372 (8)0.0350 (8)−0.0021 (6)0.0002 (6)−0.0034 (6)
C40.0311 (7)0.0354 (8)0.0291 (7)−0.0033 (6)0.0016 (6)−0.0006 (6)
C50.0405 (8)0.0314 (8)0.0344 (7)0.0001 (6)−0.0011 (6)0.0009 (6)
C60.0354 (8)0.0407 (8)0.0297 (7)−0.0013 (6)−0.0037 (6)0.0029 (6)
C70.0437 (8)0.0379 (9)0.0312 (7)−0.0045 (6)−0.0047 (6)−0.0053 (6)
C80.0412 (8)0.0318 (8)0.0370 (8)−0.0010 (6)−0.0011 (6)−0.0003 (6)
C90.0344 (8)0.0364 (8)0.0301 (7)−0.0011 (6)−0.0005 (6)0.0019 (6)
C100.0436 (9)0.0422 (9)0.0339 (8)0.0007 (7)−0.0030 (6)0.0033 (6)
O1—C101.3626 (18)C3—C41.4457 (19)
O1—C21.3951 (19)C3—H3A0.9300
O2—C101.2370 (18)C4—C51.3813 (19)
O3—C81.3553 (18)C4—C91.417 (2)
O3—H30.8200C5—C61.394 (2)
O4—C61.3518 (17)C5—H50.9300
O4—H40.8200C6—C71.393 (2)
C1—C21.493 (2)C7—C81.378 (2)
C1—H1A0.9600C7—H70.9300
C1—H1B0.9600C8—C91.418 (2)
C1—H1C0.9600C9—C101.426 (2)
C2—C31.325 (2)
C10—O1—C2121.61 (11)C4—C5—C6119.64 (13)
C8—O3—H3109.5C4—C5—H5120.2
C6—O4—H4109.5C6—C5—H5120.2
C2—C1—H1A109.5O4—C6—C7122.43 (13)
C2—C1—H1B109.5O4—C6—C5116.35 (13)
H1A—C1—H1B109.5C7—C6—C5121.22 (13)
C2—C1—H1C109.5C8—C7—C6119.81 (13)
H1A—C1—H1C109.5C8—C7—H7120.1
H1B—C1—H1C109.5C6—C7—H7120.1
C3—C2—O1120.81 (13)O3—C8—C7118.69 (13)
C3—C2—C1128.92 (15)O3—C8—C9121.23 (13)
O1—C2—C1110.27 (13)C7—C8—C9120.08 (13)
C2—C3—C4121.57 (14)C4—C9—C8119.18 (12)
C2—C3—H3A119.2C4—C9—C10120.08 (13)
C4—C3—H3A119.2C8—C9—C10120.74 (13)
C5—C4—C9120.07 (12)O2—C10—O1115.39 (13)
C5—C4—C3122.96 (13)O2—C10—C9125.66 (14)
C9—C4—C3116.96 (12)O1—C10—C9118.96 (13)
C10—O1—C2—C30.1 (2)C5—C4—C9—C80.3 (2)
C10—O1—C2—C1179.78 (13)C3—C4—C9—C8−179.69 (13)
O1—C2—C3—C4−0.1 (2)C5—C4—C9—C10179.32 (13)
C1—C2—C3—C4−179.74 (14)C3—C4—C9—C10−0.66 (19)
C2—C3—C4—C5−179.60 (14)O3—C8—C9—C4−179.69 (13)
C2—C3—C4—C90.4 (2)C7—C8—C9—C40.5 (2)
C9—C4—C5—C6−1.1 (2)O3—C8—C9—C101.3 (2)
C3—C4—C5—C6178.85 (13)C7—C8—C9—C10−178.57 (13)
C4—C5—C6—O4−178.42 (12)C2—O1—C10—O2179.49 (13)
C4—C5—C6—C71.3 (2)C2—O1—C10—C9−0.4 (2)
O4—C6—C7—C8179.14 (14)C4—C9—C10—O2−179.17 (15)
C5—C6—C7—C8−0.5 (2)C8—C9—C10—O2−0.2 (2)
C6—C7—C8—O3179.79 (14)C4—C9—C10—O10.7 (2)
C6—C7—C8—C9−0.3 (2)C8—C9—C10—O1179.67 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.922.6426 (16)146
O4—H4···O2i0.821.962.7225 (15)155
C5—H5···O4ii0.932.603.4659 (19)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O2i0.821.962.7225 (15)155
C5—H5⋯O4ii0.932.603.4659 (19)155

Symmetry codes: (i) ; (ii) .

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