Literature DB >> 21582467

1H-Benzimidazol-2-ylmethyl phenyl ether.

Noor Doha Hassan1, Hairul Anuar Tajuddin, Zanariah Abdullah, Seik Weng Ng.   

Abstract

There are two mol-ecules in the asymmetric unit of the title compound, C(14)H(10)N(2)O: the dihedral angles between their aromatic ring planes are 47.4 (4) and 46.8 (3)°. In the crystal structure, mol-ecules are linked by N-H⋯N n class="Chemical">hydrogen bonds from the secondary nitro-gen N-H donor to the tertiary N-atom acceptor of a symmetry-related neighbour, resulting in hydrogen-bonded chains. The two independent chains both propagate in [100].

Entities:  

Year:  2009        PMID: 21582467      PMCID: PMC2969076          DOI: 10.1107/S1600536809007922

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related phen­oxy-substituted N-heterocycles, see: Abdullah & Ng (2008 ▶); Hassan et al. (2008 ▶); Idris et al. (2009 ▶); Shah Bakhtiar et al. (2009 ▶).

Experimental

Crystal data

C14H12N2O M = 224.26 Orthorhombic, a = 10.0299 (5) Å b = 8.5391 (4) Å c = 27.000 (1) Å V = 2312.5 (2) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 120 K 0.40 × 0.10 × 0.03 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: none 15022 measured reflections 2699 independent reflections 1783 reflections with I > 2σ(I) R int = 0.091

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.111 S = 1.00 2699 reflections 313 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007922/hb2923sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007922/hb2923Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12N2OF(000) = 944
Mr = 224.26Dx = 1.288 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1070 reflections
a = 10.0299 (5) Åθ = 2.8–21.3°
b = 8.5391 (4) ŵ = 0.08 mm1
c = 27.000 (1) ÅT = 120 K
V = 2312.5 (2) Å3Prism, colorless
Z = 80.40 × 0.10 × 0.03 mm
Bruker SMART APEX CCD diffractometer1783 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.091
graphiteθmax = 27.5°, θmin = 2.4°
ω scansh = −12→12
15022 measured reflectionsk = −11→10
2699 independent reflectionsl = −35→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0497P)2 + 0.1971P] where P = (Fo2 + 2Fc2)/3
2699 reflections(Δ/σ)max = 0.001
313 parametersΔρmax = 0.19 e Å3
3 restraintsΔρmin = −0.23 e Å3
xyzUiso*/Ueq
O10.0484 (3)1.2098 (3)0.50009 (13)0.0299 (7)
O20.2955 (3)0.7163 (3)0.31456 (13)0.0325 (7)
N10.0514 (5)0.9631 (5)0.5645 (2)0.0218 (10)
H1−0.030 (2)0.991 (4)0.557 (2)0.026*
N20.2729 (4)0.9563 (5)0.56067 (17)0.0248 (9)
N30.2988 (6)0.4652 (5)0.2512 (2)0.0232 (11)
H30.2154 (18)0.496 (4)0.254 (2)0.028*
N40.5228 (4)0.4592 (5)0.25497 (16)0.0228 (9)
C10.0158 (8)1.3554 (8)0.4819 (3)0.0241 (15)
C2−0.0889 (9)1.3564 (10)0.4484 (3)0.038 (2)
H2−0.13151.26140.43920.046*
C3−0.1303 (13)1.4968 (6)0.4286 (5)0.046 (3)
H3A−0.20251.49800.40590.055*
C4−0.0687 (9)1.6364 (10)0.4412 (3)0.0363 (19)
H4−0.09771.73260.42710.044*
C50.0356 (9)1.6329 (9)0.4745 (3)0.036 (2)
H50.07891.72760.48350.043*
C60.0775 (12)1.4931 (5)0.4947 (4)0.031 (3)
H60.14941.49200.51770.037*
C70.1627 (4)1.1991 (5)0.53097 (18)0.0251 (10)
H7A0.15691.27590.55840.030*
H7B0.24461.22060.51170.030*
C80.1653 (6)1.0354 (7)0.5510 (2)0.0227 (13)
C90.0880 (4)0.8244 (5)0.58670 (16)0.0207 (10)
C100.0147 (4)0.7057 (5)0.60944 (17)0.0241 (9)
H10−0.07990.70880.61080.029*
C110.0864 (4)0.5826 (6)0.63004 (18)0.0266 (11)
H110.04030.50130.64690.032*
C120.2252 (4)0.5768 (5)0.62635 (17)0.0241 (10)
H120.27130.49010.64030.029*
C130.2976 (4)0.6931 (5)0.60308 (15)0.0239 (9)
H130.39190.68670.60030.029*
C140.2276 (4)0.8200 (5)0.58383 (16)0.0219 (9)
C150.2627 (8)0.8623 (8)0.3334 (3)0.0249 (15)
C160.1578 (8)0.8609 (10)0.3667 (3)0.0348 (19)
H160.11400.76540.37440.042*
C170.1170 (12)0.9988 (5)0.3886 (4)0.035 (3)
H170.04730.99780.41240.042*
C180.1780 (9)1.1382 (10)0.3759 (3)0.0333 (18)
H180.14811.23400.38990.040*
C190.2824 (9)1.1375 (9)0.3427 (3)0.0334 (19)
H190.32461.23370.33460.040*
C200.3278 (12)0.9996 (4)0.3207 (4)0.030 (3)
H200.40020.99990.29800.036*
C210.4121 (4)0.7020 (6)0.28515 (19)0.0288 (11)
H21A0.49270.71980.30550.035*
H21B0.41100.77970.25790.035*
C220.4117 (5)0.5409 (7)0.2650 (2)0.0211 (12)
C230.3366 (4)0.3256 (5)0.22992 (16)0.0201 (10)
C240.2635 (4)0.2077 (5)0.20763 (16)0.0241 (9)
H240.16890.21080.20620.029*
C250.3346 (4)0.0861 (6)0.18773 (18)0.0262 (11)
H250.28810.00410.17140.031*
C260.4741 (4)0.0791 (5)0.19069 (18)0.0286 (10)
H260.5197−0.00770.17660.034*
C270.5464 (4)0.1960 (5)0.21372 (16)0.0260 (10)
H270.64080.19050.21620.031*
C280.4760 (4)0.3219 (5)0.23303 (16)0.0203 (9)
U11U22U33U12U13U23
O10.0255 (17)0.0259 (16)0.0382 (17)0.0004 (14)−0.0086 (14)0.0034 (14)
O20.0274 (17)0.0236 (16)0.0465 (18)−0.0025 (13)0.0146 (15)−0.0054 (14)
N10.007 (2)0.0248 (18)0.033 (3)0.005 (2)−0.0012 (19)−0.001 (3)
N20.017 (2)0.0212 (18)0.037 (2)0.000 (2)0.002 (2)−0.002 (2)
N30.015 (3)0.0226 (18)0.032 (3)−0.001 (2)0.002 (2)−0.001 (3)
N40.014 (2)0.0246 (19)0.029 (2)0.004 (2)0.0014 (18)−0.006 (2)
C10.023 (3)0.021 (3)0.027 (3)0.006 (2)0.003 (2)0.004 (2)
C20.029 (4)0.033 (4)0.052 (4)0.002 (3)−0.006 (3)0.011 (3)
C30.026 (7)0.053 (8)0.059 (8)0.005 (2)−0.011 (6)0.015 (3)
C40.038 (4)0.033 (4)0.039 (3)0.010 (3)0.011 (3)0.013 (3)
C50.045 (5)0.029 (4)0.032 (3)−0.002 (3)−0.002 (3)0.006 (3)
C60.042 (7)0.034 (5)0.016 (4)0.001 (2)−0.010 (4)0.0036 (17)
C70.016 (2)0.024 (3)0.036 (3)−0.0022 (16)−0.0023 (17)0.004 (2)
C80.021 (3)0.021 (2)0.026 (3)−0.006 (2)0.000 (2)0.003 (3)
C90.015 (2)0.023 (2)0.024 (2)−0.0020 (17)−0.0003 (17)−0.0032 (19)
C100.016 (2)0.025 (2)0.031 (2)−0.0027 (18)0.0027 (18)−0.001 (2)
C110.032 (3)0.022 (3)0.026 (2)−0.0074 (19)0.0008 (19)−0.002 (2)
C120.025 (3)0.018 (2)0.030 (2)0.0031 (19)−0.0003 (19)−0.0006 (19)
C130.016 (2)0.026 (2)0.029 (2)0.0034 (17)0.0003 (18)0.0000 (18)
C140.017 (2)0.023 (2)0.025 (2)0.0029 (18)0.0011 (17)−0.0022 (17)
C150.025 (3)0.024 (3)0.025 (3)0.000 (2)0.000 (2)−0.004 (2)
C160.028 (4)0.036 (4)0.040 (4)−0.007 (3)0.012 (3)−0.010 (3)
C170.029 (6)0.040 (6)0.037 (6)−0.0004 (19)0.003 (5)−0.012 (2)
C180.033 (4)0.035 (4)0.032 (3)0.009 (3)−0.002 (3)−0.012 (3)
C190.044 (4)0.025 (3)0.031 (3)0.001 (3)−0.004 (3)0.002 (3)
C200.029 (6)0.023 (5)0.038 (5)0.0021 (17)−0.006 (4)−0.0012 (18)
C210.018 (3)0.033 (3)0.036 (3)−0.0038 (18)0.0055 (18)−0.004 (2)
C220.010 (3)0.025 (2)0.029 (3)0.002 (2)0.0020 (19)0.005 (3)
C230.019 (2)0.020 (2)0.021 (2)0.0017 (17)0.0031 (17)0.0017 (19)
C240.019 (2)0.026 (2)0.028 (2)−0.0038 (18)−0.0001 (17)0.003 (2)
C250.028 (3)0.025 (3)0.026 (2)−0.0021 (19)−0.0023 (19)−0.005 (2)
C260.029 (3)0.027 (3)0.030 (2)0.004 (2)0.001 (2)−0.003 (2)
C270.019 (2)0.028 (2)0.032 (2)0.0029 (18)0.0016 (18)0.0038 (19)
C280.014 (2)0.020 (2)0.026 (2)−0.0038 (17)0.0009 (17)0.0047 (17)
O1—C11.376 (8)C10—H100.9500
O1—C71.421 (5)C11—C121.397 (6)
O2—C151.386 (8)C11—H110.9500
O2—C211.419 (5)C12—C131.381 (6)
N1—C81.349 (8)C12—H120.9500
N1—C91.377 (6)C13—C141.392 (5)
N1—H10.880 (10)C13—H130.9500
N2—C81.299 (7)C15—C161.383 (11)
N2—C141.397 (6)C15—C201.385 (11)
N3—C221.357 (8)C16—C171.380 (11)
N3—C231.376 (6)C16—H160.9500
N3—H30.881 (10)C17—C181.382 (11)
N4—C221.342 (7)C17—H170.9500
N4—C281.395 (6)C18—C191.377 (13)
C1—C61.373 (10)C18—H180.9500
C1—C21.386 (12)C19—C201.396 (11)
C2—C31.377 (11)C19—H190.9500
C2—H20.9500C20—H200.9500
C3—C41.384 (12)C21—C221.480 (8)
C3—H3A0.9500C21—H21A0.9900
C4—C51.381 (13)C21—H21B0.9900
C4—H40.9500C23—C241.383 (6)
C5—C61.379 (10)C23—C281.402 (5)
C5—H50.9500C24—C251.369 (6)
C6—H60.9500C24—H240.9500
C7—C81.500 (7)C25—C261.402 (6)
C7—H7A0.9900C25—H250.9500
C7—H7B0.9900C26—C271.382 (6)
C9—C101.394 (6)C26—H260.9500
C9—C141.403 (5)C27—C281.387 (6)
C10—C111.389 (6)C27—H270.9500
C1—O1—C7117.3 (4)C12—C13—H13121.2
C15—O2—C21118.5 (4)C14—C13—H13121.2
C8—N1—C9106.6 (5)C13—C14—N2130.7 (4)
C8—N1—H1127 (3)C13—C14—C9120.2 (4)
C9—N1—H1126 (3)N2—C14—C9109.1 (3)
C8—N2—C14104.6 (5)C16—C15—C20121.8 (8)
C22—N3—C23107.3 (5)C16—C15—O2114.3 (6)
C22—N3—H3129 (3)C20—C15—O2124.0 (7)
C23—N3—H3124 (3)C17—C16—C15119.8 (8)
C22—N4—C28104.1 (4)C17—C16—H16120.1
C6—C1—O1125.2 (7)C15—C16—H16120.1
C6—C1—C2120.1 (8)C16—C17—C18119.7 (10)
O1—C1—C2114.7 (7)C16—C17—H17120.1
C3—C2—C1119.1 (9)C18—C17—H17120.1
C3—C2—H2120.4C19—C18—C17119.7 (8)
C1—C2—H2120.4C19—C18—H18120.2
C2—C3—C4121.4 (11)C17—C18—H18120.2
C2—C3—H3A119.3C18—C19—C20121.9 (9)
C4—C3—H3A119.3C18—C19—H19119.0
C5—C4—C3118.6 (8)C20—C19—H19119.0
C5—C4—H4120.7C15—C20—C19117.0 (11)
C3—C4—H4120.7C15—C20—H20121.5
C6—C5—C4120.6 (9)C19—C20—H20121.5
C6—C5—H5119.7O2—C21—C22106.5 (4)
C4—C5—H5119.7O2—C21—H21A110.4
C1—C6—C5120.2 (10)C22—C21—H21A110.4
C1—C6—H6119.9O2—C21—H21B110.4
C5—C6—H6119.9C22—C21—H21B110.4
O1—C7—C8106.6 (4)H21A—C21—H21B108.6
O1—C7—H7A110.4N4—C22—N3113.0 (5)
C8—C7—H7A110.4N4—C22—C21123.7 (5)
O1—C7—H7B110.4N3—C22—C21123.1 (5)
C8—C7—H7B110.4N3—C23—C24131.8 (4)
H7A—C7—H7B108.6N3—C23—C28105.7 (4)
N2—C8—N1114.3 (5)C24—C23—C28122.5 (4)
N2—C8—C7124.8 (5)C25—C24—C23116.6 (4)
N1—C8—C7120.6 (5)C25—C24—H24121.7
N1—C9—C10132.6 (4)C23—C24—H24121.7
N1—C9—C14105.3 (4)C24—C25—C26122.0 (4)
C10—C9—C14122.1 (4)C24—C25—H25119.0
C11—C10—C9117.0 (4)C26—C25—H25119.0
C11—C10—H10121.5C27—C26—C25121.2 (4)
C9—C10—H10121.5C27—C26—H26119.4
C10—C11—C12120.9 (4)C25—C26—H26119.4
C10—C11—H11119.5C26—C27—C28117.5 (4)
C12—C11—H11119.5C26—C27—H27121.3
C13—C12—C11122.0 (4)C28—C27—H27121.3
C13—C12—H12119.0C27—C28—N4129.8 (4)
C11—C12—H12119.0C27—C28—C23120.2 (4)
C12—C13—C14117.7 (4)N4—C28—C23110.0 (3)
C7—O1—C1—C6−6.1 (11)C21—O2—C15—C16−172.0 (6)
C7—O1—C1—C2174.2 (6)C21—O2—C15—C207.9 (10)
C6—C1—C2—C3−0.5 (15)C20—C15—C16—C17−0.9 (14)
O1—C1—C2—C3179.1 (8)O2—C15—C16—C17179.0 (8)
C1—C2—C3—C40.6 (18)C15—C16—C17—C182.4 (16)
C2—C3—C4—C5−0.4 (18)C16—C17—C18—C19−2.4 (16)
C3—C4—C5—C60.0 (15)C17—C18—C19—C201.1 (14)
O1—C1—C6—C5−179.4 (6)C16—C15—C20—C19−0.4 (15)
C2—C1—C6—C50.2 (16)O2—C15—C20—C19179.6 (6)
C4—C5—C6—C10.1 (16)C18—C19—C20—C150.4 (15)
C1—O1—C7—C8172.5 (5)C15—O2—C21—C22−172.6 (5)
C14—N2—C8—N1−1.5 (7)C28—N4—C22—N30.2 (7)
C14—N2—C8—C7173.1 (5)C28—N4—C22—C21−175.0 (5)
C9—N1—C8—N22.0 (8)C23—N3—C22—N4−1.0 (7)
C9—N1—C8—C7−172.9 (5)C23—N3—C22—C21174.3 (5)
O1—C7—C8—N2146.8 (6)O2—C21—C22—N4−149.1 (5)
O1—C7—C8—N1−39.0 (7)O2—C21—C22—N336.1 (7)
C8—N1—C9—C10177.0 (5)C22—N3—C23—C24−176.6 (5)
C8—N1—C9—C14−1.6 (6)C22—N3—C23—C281.3 (6)
N1—C9—C10—C11−177.4 (5)N3—C23—C24—C25176.7 (5)
C14—C9—C10—C111.0 (6)C28—C23—C24—C25−1.0 (6)
C9—C10—C11—C12−2.2 (6)C23—C24—C25—C261.5 (7)
C10—C11—C12—C131.2 (6)C24—C25—C26—C27−0.5 (7)
C11—C12—C13—C141.1 (6)C25—C26—C27—C28−1.1 (6)
C12—C13—C14—N2176.8 (4)C26—C27—C28—N4−175.4 (4)
C12—C13—C14—C9−2.3 (5)C26—C27—C28—C231.5 (6)
C8—N2—C14—C13−178.8 (5)C22—N4—C28—C27177.8 (5)
C8—N2—C14—C90.4 (6)C22—N4—C28—C230.7 (5)
N1—C9—C14—C13−179.9 (4)N3—C23—C28—C27−178.7 (4)
C10—C9—C14—C131.3 (6)C24—C23—C28—C27−0.5 (6)
N1—C9—C14—N20.7 (5)N3—C23—C28—N4−1.3 (5)
C10—C9—C14—N2−178.0 (4)C24—C23—C28—N4176.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.88 (1)2.03 (2)2.879 (7)163 (6)
N3—H3···N4ii0.88 (1)1.97 (2)2.845 (8)172 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.88 (1)2.03 (2)2.879 (7)163 (6)
N3—H3⋯N4ii0.88 (1)1.97 (2)2.845 (8)172 (5)

Symmetry codes: (i) ; (ii) .

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