Literature DB >> 21582442

3-Nitro-phenyl pyrimidin-2-yl ether.

Nasir Shah Bakhtiar1, Zanariah Abdullah, Seik Weng Ng.   

Abstract

In the title compound, C(10)H(7)N(3)O(3), the dihedral angle between the two aromatic rings is 87.5 (1) Å; their ipso-C atoms subtend an angle of 117.4 (1)° at the ether O atom.

Entities:  

Year:  2009        PMID: 21582442      PMCID: PMC2968901          DOI: 10.1107/S1600536809007697

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of phenyl pyrimidin-2-yl ether, see: Shah Bakhtiar et al. (2009 ▶).

Experimental

Crystal data

C10H7N3O3 M = 217.19 Orthorhombic, a = 18.1360 (3) Å b = 7.3355 (1) Å c = 14.5986 (3) Å V = 1942.15 (6) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 118 K 0.40 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: none 12785 measured reflections 2242 independent reflections 1890 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.02 2242 reflections 145 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007697/hb2922sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007697/hb2922Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7N3O3F(000) = 896
Mr = 217.19Dx = 1.486 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 4130 reflections
a = 18.1360 (3) Åθ = 2.8–28.2°
b = 7.3355 (1) ŵ = 0.11 mm1
c = 14.5986 (3) ÅT = 118 K
V = 1942.15 (6) Å3Block, faint brown
Z = 80.40 × 0.20 × 0.15 mm
Bruker SMART APEX CCD diffractometer1890 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 27.5°, θmin = 2.3°
ω scansh = −23→23
12785 measured reflectionsk = −9→9
2242 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0556P)2 + 0.7122P] where P = (Fo2 + 2Fc2)/3
2242 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.29 e Å3
xyzUiso*/Ueq
O10.46423 (5)0.52259 (12)0.36904 (6)0.0222 (2)
O20.34305 (5)0.73218 (14)0.08352 (6)0.0291 (2)
O30.22956 (6)0.7828 (2)0.12079 (7)0.0467 (3)
N10.42087 (6)0.22878 (14)0.35641 (8)0.0228 (2)
N20.54579 (6)0.29874 (15)0.39501 (8)0.0234 (3)
N30.29278 (6)0.73707 (16)0.13953 (7)0.0238 (3)
C10.43734 (8)0.05109 (18)0.36142 (10)0.0280 (3)
H10.3994−0.03550.35020.034*
C20.50707 (8)−0.01134 (18)0.38219 (10)0.0284 (3)
H20.5182−0.13780.38500.034*
C30.56002 (7)0.12058 (19)0.39866 (10)0.0267 (3)
H30.60870.08240.41320.032*
C40.47660 (7)0.33980 (16)0.37377 (8)0.0180 (3)
C50.39288 (6)0.58007 (15)0.34572 (8)0.0179 (3)
C60.34150 (7)0.60883 (16)0.41443 (8)0.0205 (3)
H60.35320.58200.47640.025*
C70.27269 (7)0.67742 (17)0.39132 (9)0.0218 (3)
H70.23690.69650.43780.026*
C80.25564 (7)0.71852 (17)0.30078 (8)0.0202 (3)
H80.20860.76550.28450.024*
C90.30919 (7)0.68896 (16)0.23527 (8)0.0181 (3)
C100.37846 (6)0.61910 (15)0.25487 (8)0.0180 (2)
H100.41410.59910.20830.022*
U11U22U33U12U13U23
O10.0150 (4)0.0171 (4)0.0344 (5)−0.0013 (3)−0.0053 (4)0.0031 (4)
O20.0272 (5)0.0406 (6)0.0196 (5)−0.0023 (4)0.0039 (4)0.0012 (4)
O30.0262 (6)0.0873 (10)0.0266 (6)0.0152 (6)−0.0062 (4)0.0083 (6)
N10.0197 (5)0.0192 (5)0.0295 (6)−0.0015 (4)−0.0035 (4)−0.0006 (4)
N20.0175 (5)0.0233 (6)0.0294 (6)0.0008 (4)−0.0015 (4)0.0036 (4)
N30.0215 (5)0.0300 (6)0.0199 (5)0.0000 (4)−0.0019 (4)0.0000 (4)
C10.0278 (7)0.0187 (6)0.0375 (8)−0.0030 (5)−0.0046 (6)−0.0024 (5)
C20.0300 (7)0.0199 (6)0.0352 (7)0.0038 (5)−0.0011 (6)−0.0005 (5)
C30.0209 (6)0.0265 (7)0.0326 (7)0.0050 (5)−0.0013 (5)0.0033 (5)
C40.0183 (6)0.0186 (6)0.0173 (6)−0.0010 (4)0.0003 (4)0.0019 (4)
C50.0150 (5)0.0133 (5)0.0255 (6)−0.0016 (4)−0.0025 (5)0.0005 (4)
C60.0237 (6)0.0193 (6)0.0186 (6)−0.0031 (5)−0.0010 (5)0.0015 (4)
C70.0215 (6)0.0224 (6)0.0214 (6)0.0007 (5)0.0046 (5)−0.0013 (5)
C80.0154 (5)0.0213 (6)0.0240 (6)0.0022 (4)0.0007 (5)−0.0010 (5)
C90.0185 (6)0.0182 (5)0.0175 (6)−0.0013 (4)−0.0012 (4)−0.0005 (4)
C100.0152 (5)0.0173 (5)0.0214 (6)−0.0010 (4)0.0023 (4)−0.0021 (4)
O1—C41.3613 (15)C2—H20.9500
O1—C51.4029 (14)C3—H30.9500
O2—N31.2252 (14)C5—C101.3819 (17)
O3—N31.2256 (15)C5—C61.3852 (17)
N1—C41.3225 (16)C6—C71.3872 (18)
N1—C11.3392 (17)C6—H60.9500
N2—C41.3273 (16)C7—C81.3907 (18)
N2—C31.3332 (17)C7—H70.9500
N3—C91.4720 (16)C8—C91.3801 (17)
C1—C21.379 (2)C8—H80.9500
C1—H10.9500C9—C101.3867 (17)
C2—C31.384 (2)C10—H100.9500
C4—O1—C5117.41 (9)C10—C5—C6122.42 (11)
C4—N1—C1114.73 (11)C10—C5—O1118.01 (10)
C4—N2—C3114.50 (11)C6—C5—O1119.37 (11)
O2—N3—O3123.73 (11)C5—C6—C7118.97 (11)
O2—N3—C9118.44 (11)C5—C6—H6120.5
O3—N3—C9117.82 (11)C7—C6—H6120.5
N1—C1—C2122.68 (13)C6—C7—C8120.65 (11)
N1—C1—H1118.7C6—C7—H7119.7
C2—C1—H1118.7C8—C7—H7119.7
C1—C2—C3116.25 (12)C9—C8—C7117.91 (11)
C1—C2—H2121.9C9—C8—H8121.0
C3—C2—H2121.9C7—C8—H8121.0
N2—C3—C2122.96 (12)C8—C9—C10123.55 (11)
N2—C3—H3118.5C8—C9—N3118.55 (11)
C2—C3—H3118.5C10—C9—N3117.88 (11)
N1—C4—N2128.87 (12)C5—C10—C9116.49 (11)
N1—C4—O1118.10 (11)C5—C10—H10121.8
N2—C4—O1113.03 (10)C9—C10—H10121.8
C4—N1—C1—C2−0.6 (2)O1—C5—C6—C7175.68 (10)
N1—C1—C2—C30.5 (2)C5—C6—C7—C8−0.65 (18)
C4—N2—C3—C2−0.3 (2)C6—C7—C8—C9−0.02 (18)
C1—C2—C3—N20.0 (2)C7—C8—C9—C100.66 (18)
C1—N1—C4—N20.2 (2)C7—C8—C9—N3−178.15 (11)
C1—N1—C4—O1179.32 (11)O2—N3—C9—C8171.09 (11)
C3—N2—C4—N10.3 (2)O3—N3—C9—C8−7.71 (18)
C3—N2—C4—O1−178.92 (11)O2—N3—C9—C10−7.78 (17)
C5—O1—C4—N1−0.16 (16)O3—N3—C9—C10173.41 (13)
C5—O1—C4—N2179.13 (10)C6—C5—C10—C9−0.15 (17)
C4—O1—C5—C10−94.96 (13)O1—C5—C10—C9−175.15 (10)
C4—O1—C5—C689.88 (13)C8—C9—C10—C5−0.57 (18)
C10—C5—C6—C70.74 (18)N3—C9—C10—C5178.25 (10)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenoxy-pyrimidine.

Authors:  Nasir Shah Bakhtiar; Zanariah Abdullah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13
  2 in total

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