Literature DB >> 21582441

N-(Pyrimidin-2-yl)aniline.

Edura Badaruddin1, Nasir Shah Bakhtiar, Zaharah Aiyub, Zanariah Abdullah, Seik Weng Ng.   

Abstract

There are two molecules in the asymmetric unit of the title compound, C(10)H(9)N(3), with inter-ring dihedral angles of 31.1 (1) and 35.3 (1)°. The bridging C-N-C bond angles are 128.2 (1) and 129.1 (1)°. In the crystal, the two independent mol-ecules are linked into a dimer by two N-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582441      PMCID: PMC2969043          DOI: 10.1107/S1600536809007685

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 4-chloro-N-(pyrimidin-2-yl)aniline, see: Maizathul Akmam et al. (2009 ▶).

Experimental

Crystal data

C10H9N3 M = 171.20 Triclinic, a = 8.8792 (2) Å b = 9.9382 (2) Å c = 10.2038 (2) Å α = 93.186 (1)° β = 103.665 (1)° γ = 97.780 (1)° V = 863.28 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 123 K 0.35 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 8238 measured reflections 3950 independent reflections 3144 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.03 3950 reflections 243 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007685/xu2492sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007685/xu2492Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9N3Z = 4
Mr = 171.20F(000) = 360
Triclinic, P1Dx = 1.317 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8792 (2) ÅCell parameters from 3015 reflections
b = 9.9382 (2) Åθ = 2.7–28.3°
c = 10.2038 (2) ŵ = 0.08 mm1
α = 93.186 (1)°T = 123 K
β = 103.665 (1)°Prism, colorless
γ = 97.780 (1)°0.35 × 0.20 × 0.10 mm
V = 863.28 (3) Å3
Bruker SMART APEX diffractometer3144 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
graphiteθmax = 27.5°, θmin = 2.1°
ω scansh = −11→11
8238 measured reflectionsk = −12→12
3950 independent reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.056P)2 + 0.1316P] where P = (Fo2 + 2Fc2)/3
3950 reflections(Δ/σ)max = 0.001
243 parametersΔρmax = 0.20 e Å3
2 restraintsΔρmin = −0.22 e Å3
xyzUiso*/Ueq
N10.63241 (11)0.69760 (10)0.39973 (10)0.0229 (2)
H10.5458 (13)0.7328 (15)0.4021 (15)0.042 (4)*
N20.60532 (11)0.62876 (10)0.60461 (10)0.0235 (2)
N30.82465 (11)0.58169 (10)0.51919 (10)0.0257 (2)
N40.33475 (12)0.78540 (10)0.59499 (10)0.0256 (2)
H40.4034 (15)0.7306 (13)0.5833 (14)0.038 (4)*
N50.37902 (11)0.86480 (10)0.39948 (10)0.0256 (2)
N60.18856 (11)0.94997 (10)0.50126 (10)0.0245 (2)
C10.69680 (13)0.72230 (11)0.28811 (11)0.0212 (2)
C20.59235 (14)0.72964 (12)0.16374 (12)0.0259 (3)
H20.48270.71630.15710.031*
C30.64691 (15)0.75616 (13)0.04969 (12)0.0305 (3)
H30.57480.7621−0.03420.037*
C40.80703 (15)0.77406 (13)0.05803 (13)0.0304 (3)
H4A0.84490.7896−0.02030.036*
C50.91044 (14)0.76895 (12)0.18192 (12)0.0273 (3)
H51.02000.78240.18820.033*
C60.85757 (13)0.74464 (11)0.29708 (12)0.0234 (2)
H60.93040.74320.38160.028*
C70.69174 (13)0.63447 (11)0.51132 (11)0.0208 (2)
C80.66215 (14)0.56772 (12)0.71431 (12)0.0269 (3)
H80.60550.56180.78250.032*
C90.79969 (15)0.51238 (14)0.73406 (13)0.0321 (3)
H90.83930.47060.81400.039*
C100.87631 (14)0.52129 (13)0.63096 (13)0.0309 (3)
H100.97000.48260.64020.037*
C110.27870 (12)0.77031 (12)0.71236 (11)0.0219 (2)
C120.28250 (13)0.64404 (12)0.76560 (12)0.0245 (3)
H120.31710.57280.71990.029*
C130.23654 (14)0.62121 (13)0.88390 (12)0.0281 (3)
H130.23990.53490.91910.034*
C140.18554 (15)0.72450 (14)0.95093 (13)0.0322 (3)
H140.15320.70931.03190.039*
C150.18214 (16)0.84974 (14)0.89877 (13)0.0336 (3)
H150.14700.92040.94470.040*
C160.22895 (14)0.87466 (12)0.78070 (12)0.0274 (3)
H160.22710.96170.74690.033*
C170.29837 (13)0.87077 (11)0.49672 (11)0.0220 (2)
C180.34955 (14)0.95120 (12)0.30445 (12)0.0277 (3)
H180.40520.95200.23560.033*
C190.24158 (14)1.03965 (12)0.30177 (12)0.0281 (3)
H190.22331.10160.23420.034*
C200.16165 (14)1.03296 (12)0.40278 (12)0.0271 (3)
H200.08401.09010.40200.033*
U11U22U33U12U13U23
N10.0200 (5)0.0288 (5)0.0229 (5)0.0082 (4)0.0084 (4)0.0053 (4)
N20.0250 (5)0.0245 (5)0.0232 (5)0.0057 (4)0.0090 (4)0.0032 (4)
N30.0237 (5)0.0303 (5)0.0251 (5)0.0093 (4)0.0068 (4)0.0043 (4)
N40.0280 (5)0.0276 (5)0.0273 (5)0.0120 (4)0.0134 (4)0.0068 (4)
N50.0250 (5)0.0288 (5)0.0260 (5)0.0065 (4)0.0102 (4)0.0052 (4)
N60.0223 (5)0.0262 (5)0.0260 (5)0.0066 (4)0.0062 (4)0.0031 (4)
C10.0246 (5)0.0192 (5)0.0215 (5)0.0043 (4)0.0086 (4)0.0019 (4)
C20.0239 (6)0.0279 (6)0.0260 (6)0.0052 (5)0.0055 (5)0.0043 (5)
C30.0364 (7)0.0325 (7)0.0221 (6)0.0062 (5)0.0054 (5)0.0046 (5)
C40.0393 (7)0.0294 (6)0.0262 (6)0.0035 (5)0.0159 (5)0.0041 (5)
C50.0273 (6)0.0255 (6)0.0319 (7)0.0025 (5)0.0140 (5)0.0014 (5)
C60.0230 (5)0.0241 (6)0.0232 (6)0.0032 (4)0.0063 (4)0.0007 (4)
C70.0208 (5)0.0207 (5)0.0206 (5)0.0022 (4)0.0055 (4)−0.0003 (4)
C80.0319 (6)0.0291 (6)0.0220 (6)0.0050 (5)0.0107 (5)0.0036 (5)
C90.0345 (7)0.0394 (7)0.0246 (6)0.0114 (6)0.0061 (5)0.0114 (5)
C100.0263 (6)0.0364 (7)0.0317 (7)0.0122 (5)0.0055 (5)0.0073 (5)
C110.0182 (5)0.0257 (6)0.0228 (6)0.0043 (4)0.0060 (4)0.0035 (4)
C120.0245 (6)0.0243 (6)0.0259 (6)0.0054 (4)0.0080 (5)0.0010 (5)
C130.0299 (6)0.0269 (6)0.0294 (6)0.0042 (5)0.0096 (5)0.0075 (5)
C140.0363 (7)0.0406 (7)0.0259 (6)0.0105 (6)0.0160 (5)0.0087 (5)
C150.0417 (7)0.0368 (7)0.0295 (7)0.0172 (6)0.0166 (6)0.0036 (5)
C160.0328 (6)0.0253 (6)0.0275 (6)0.0097 (5)0.0104 (5)0.0048 (5)
C170.0199 (5)0.0228 (6)0.0232 (6)0.0025 (4)0.0060 (4)0.0017 (4)
C180.0291 (6)0.0300 (6)0.0254 (6)0.0028 (5)0.0102 (5)0.0049 (5)
C190.0329 (6)0.0254 (6)0.0257 (6)0.0047 (5)0.0054 (5)0.0074 (5)
C200.0268 (6)0.0257 (6)0.0287 (6)0.0082 (5)0.0042 (5)0.0019 (5)
N1—C71.3613 (14)C5—H50.9500
N1—C11.4090 (14)C6—H60.9500
N1—H10.892 (9)C8—C91.3829 (17)
N2—C81.3294 (15)C8—H80.9500
N2—C71.3555 (14)C9—C101.3819 (17)
N3—C101.3322 (15)C9—H90.9500
N3—C71.3423 (14)C10—H100.9500
N4—C171.3584 (15)C11—C161.3950 (16)
N4—C111.4093 (14)C11—C121.3963 (16)
N4—H40.894 (8)C12—C131.3831 (16)
N5—C181.3339 (15)C12—H120.9500
N5—C171.3570 (14)C13—C141.3859 (17)
N6—C201.3338 (15)C13—H130.9500
N6—C171.3407 (14)C14—C151.3818 (18)
C1—C61.3949 (15)C14—H140.9500
C1—C21.3958 (16)C15—C161.3883 (17)
C2—C31.3873 (16)C15—H150.9500
C2—H20.9500C16—H160.9500
C3—C41.3903 (18)C18—C191.3824 (17)
C3—H30.9500C18—H180.9500
C4—C51.3839 (18)C19—C201.3824 (17)
C4—H4A0.9500C19—H190.9500
C5—C61.3860 (16)C20—H200.9500
C7—N1—C1128.19 (9)C10—C9—H9121.9
C7—N1—H1114.6 (10)C8—C9—H9121.9
C1—N1—H1117.0 (10)N3—C10—C9122.94 (11)
C8—N2—C7115.61 (10)N3—C10—H10118.5
C10—N3—C7116.06 (10)C9—C10—H10118.5
C17—N4—C11129.13 (10)C16—C11—C12119.15 (10)
C17—N4—H4115.5 (9)C16—C11—N4124.17 (10)
C11—N4—H4115.4 (9)C12—C11—N4116.58 (10)
C18—N5—C17115.71 (10)C13—C12—C11120.91 (11)
C20—N6—C17115.97 (10)C13—C12—H12119.5
C6—C1—C2119.10 (10)C11—C12—H12119.5
C6—C1—N1123.56 (10)C12—C13—C14119.88 (11)
C2—C1—N1117.30 (10)C12—C13—H13120.1
C3—C2—C1120.70 (11)C14—C13—H13120.1
C3—C2—H2119.7C15—C14—C13119.35 (11)
C1—C2—H2119.7C15—C14—H14120.3
C2—C3—C4120.04 (11)C13—C14—H14120.3
C2—C3—H3120.0C14—C15—C16121.49 (11)
C4—C3—H3120.0C14—C15—H15119.3
C5—C4—C3119.13 (11)C16—C15—H15119.3
C5—C4—H4A120.4C15—C16—C11119.20 (11)
C3—C4—H4A120.4C15—C16—H16120.4
C4—C5—C6121.39 (11)C11—C16—H16120.4
C4—C5—H5119.3N6—C17—N5125.94 (11)
C6—C5—H5119.3N6—C17—N4119.51 (10)
C5—C6—C1119.59 (11)N5—C17—N4114.55 (10)
C5—C6—H6120.2N5—C18—C19122.92 (11)
C1—C6—H6120.2N5—C18—H18118.5
N3—C7—N2125.92 (10)C19—C18—H18118.5
N3—C7—N1119.10 (10)C18—C19—C20116.34 (11)
N2—C7—N1114.96 (10)C18—C19—H19121.8
N2—C8—C9123.22 (11)C20—C19—H19121.8
N2—C8—H8118.4N6—C20—C19123.03 (11)
C9—C8—H8118.4N6—C20—H20118.5
C10—C9—C8116.22 (11)C19—C20—H20118.5
C7—N1—C1—C6−31.08 (18)C17—N4—C11—C16−28.92 (18)
C7—N1—C1—C2151.47 (11)C17—N4—C11—C12154.69 (11)
C6—C1—C2—C31.23 (17)C16—C11—C12—C130.54 (17)
N1—C1—C2—C3178.80 (10)N4—C11—C12—C13177.12 (10)
C1—C2—C3—C40.81 (18)C11—C12—C13—C140.15 (18)
C2—C3—C4—C5−1.85 (18)C12—C13—C14—C15−0.37 (19)
C3—C4—C5—C60.85 (18)C13—C14—C15—C16−0.1 (2)
C4—C5—C6—C11.19 (17)C14—C15—C16—C110.8 (2)
C2—C1—C6—C5−2.21 (17)C12—C11—C16—C15−1.00 (18)
N1—C1—C6—C5−179.62 (10)N4—C11—C16—C15−177.30 (11)
C10—N3—C7—N2−1.59 (17)C20—N6—C17—N5−2.37 (17)
C10—N3—C7—N1−179.97 (10)C20—N6—C17—N4178.70 (10)
C8—N2—C7—N31.75 (16)C18—N5—C17—N63.36 (17)
C8—N2—C7—N1−179.81 (10)C18—N5—C17—N4−177.67 (10)
C1—N1—C7—N3−3.22 (17)C11—N4—C17—N6−3.96 (18)
C1—N1—C7—N2178.23 (10)C11—N4—C17—N5176.99 (11)
C7—N2—C8—C9−0.28 (17)C17—N5—C18—C19−1.45 (17)
N2—C8—C9—C10−1.14 (19)N5—C18—C19—C20−1.09 (18)
C7—N3—C10—C9−0.06 (18)C17—N6—C20—C19−0.57 (17)
C8—C9—C10—N31.3 (2)C18—C19—C20—N62.18 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1···N50.89 (1)2.10 (1)2.972 (1)164 (1)
N4—H4···N20.89 (1)2.15 (1)3.020 (1)165 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N50.89 (1)2.10 (1)2.972 (1)164 (1)
N4—H4⋯N20.89 (1)2.15 (1)3.020 (1)165 (1)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Chloro-N-(pyrimidin-2-yl)aniline.

Authors:  A Bakar Maizathul Akmam; Zanariah Abdullah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10
  2 in total
  3 in total

1.  N-(4-Methyl-phen-yl)-3-nitro-pyridin-2-amine.

Authors:  Mardia Aina Aznan Akhmad; Zanariah Abdullah; Zainal A Fairuz; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

2.  N-(3-Methyl-phen-yl)pyrimidin-2-amine.

Authors:  Edura Badaruddin; Zaharah Aiyub; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

3.  4-Nitro-benzoic acid-N-(pyrimidin-2-yl)aniline (1/1).

Authors:  Aina Mardia Akhmad Aznan; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  3 in total

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