Literature DB >> 21582432

1,4-Bis[(1H-pyrazol-1-yl)meth-yl]benzene dihydrate.

Ai-E Shi1, Yan-Jun Hou, Yi-Ming Zhang, Guang-Feng Hou, Jin-Sheng Gao.   

Abstract

The asymmetric unit of the title compound, C(14)H(14)N(4)·2H(2)O consists of two half-mol-ecules of the main mol-ecule, each situated on an inversion center, and two mol-ecules of water. One-dimensional chains of water mol-ecules are built up by O-H⋯O hydrogen bonds which are then linked with the main mol-ecule via O-H⋯N hydrogen bonds, forming a two-dimensional supra-molecular network in the ac plane.

Entities:  

Year:  2009        PMID: 21582432      PMCID: PMC2968890          DOI: 10.1107/S1600536809007521

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and the synthesis, see: Chang et al. (1993 ▶). For similar structures, see: Bourne et al. (2006 ▶).

Experimental

Crystal data

C14H14N4·2H2O M = 274.32 Monoclinic, a = 4.680 (2) Å b = 18.640 (8) Å c = 16.974 (10) Å β = 91.15 (2)° V = 1480.6 (13) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 291 K 0.29 × 0.27 × 0.19 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.956, T max = 0.984 14065 measured reflections 3361 independent reflections 1735 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.123 S = 1.00 3361 reflections 181 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007521/fl2236sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007521/fl2236Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14N4·2H2OF(000) = 584
Mr = 274.32Dx = 1.231 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8012 reflections
a = 4.680 (2) Åθ = 6.5–54.9°
b = 18.640 (8) ŵ = 0.09 mm1
c = 16.974 (10) ÅT = 291 K
β = 91.15 (2)°Block, colorless
V = 1480.6 (13) Å30.29 × 0.27 × 0.19 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3361 independent reflections
Radiation source: fine-focus sealed tube1735 reflections with I > 2σ(I)
graphiteRint = 0.050
ω scanθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −6→5
Tmin = 0.956, Tmax = 0.984k = −23→24
14065 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0547P)2] where P = (Fo2 + 2Fc2)/3
3361 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8625 (5)0.35411 (10)0.69781 (13)0.0727 (6)
H10.75840.32090.66800.087*
C21.0682 (5)0.33893 (11)0.75233 (13)0.0784 (6)
H21.13450.29390.76770.094*
C31.1572 (4)0.40427 (12)0.77993 (12)0.0737 (6)
H31.29830.41040.81870.088*
C40.6675 (4)0.46818 (11)0.63845 (12)0.0709 (6)
H40.60930.51240.66350.085*
H50.49630.44190.62310.085*
C50.8366 (3)0.48549 (9)0.56601 (11)0.0551 (4)
C60.8351 (4)0.43987 (10)0.50232 (12)0.0642 (5)
H60.72320.39870.50340.077*
C71.0049 (4)0.54625 (9)0.56293 (11)0.0622 (5)
H71.00990.57790.60530.075*
C80.5827 (4)0.27680 (10)−0.07594 (13)0.0724 (6)
H80.66420.2909−0.12300.087*
C90.3835 (5)0.22438 (10)−0.06711 (15)0.0776 (6)
H90.30160.1955−0.10610.093*
C100.3302 (4)0.22347 (9)0.01191 (14)0.0706 (6)
H100.20150.19250.03540.085*
C110.8187 (4)0.36625 (9)0.01523 (13)0.0663 (5)
H110.98080.3674−0.01950.080*
H120.89160.36120.06880.080*
C120.6550 (3)0.43624 (8)0.00771 (11)0.0527 (4)
C130.6725 (4)0.47764 (9)−0.05894 (11)0.0616 (5)
H130.78980.4630−0.09950.074*
C140.4809 (4)0.45945 (9)0.06678 (11)0.0624 (5)
H140.46630.43240.11260.075*
N10.8358 (3)0.42535 (8)0.69450 (8)0.0559 (4)
N21.0191 (3)0.45779 (8)0.74505 (9)0.0660 (4)
N30.6401 (3)0.30445 (7)−0.00459 (10)0.0579 (4)
N40.4843 (3)0.27223 (7)0.05120 (10)0.0638 (4)
O10.4928 (3)0.31462 (7)0.21740 (9)0.0847 (4)
H150.49390.30310.16900.127*
H160.33740.33730.22380.127*
O20.9966 (3)0.38581 (8)0.24291 (10)0.1062 (6)
H170.97460.43110.24210.159*
H180.83290.36630.23860.159*
U11U22U33U12U13U23
C10.0920 (14)0.0568 (11)0.0693 (14)−0.0064 (10)0.0027 (12)0.0032 (10)
C20.0967 (15)0.0713 (13)0.0674 (14)0.0235 (12)0.0093 (12)0.0138 (11)
C30.0689 (12)0.0959 (16)0.0562 (12)0.0135 (12)−0.0021 (10)0.0092 (11)
C40.0529 (10)0.0895 (13)0.0704 (14)0.0117 (9)0.0054 (10)0.0187 (11)
C50.0413 (9)0.0633 (10)0.0605 (12)0.0094 (8)−0.0013 (8)0.0145 (9)
C60.0646 (11)0.0599 (10)0.0679 (13)−0.0089 (9)−0.0060 (10)0.0122 (10)
C70.0708 (11)0.0571 (10)0.0587 (12)0.0052 (9)−0.0026 (10)0.0019 (9)
C80.0854 (14)0.0656 (12)0.0664 (15)0.0127 (11)0.0027 (11)0.0025 (10)
C90.0921 (15)0.0559 (11)0.0839 (18)0.0042 (11)−0.0177 (13)−0.0075 (11)
C100.0695 (12)0.0487 (10)0.0935 (18)−0.0009 (9)0.0001 (12)0.0009 (10)
C110.0505 (10)0.0544 (10)0.0936 (16)0.0012 (8)−0.0073 (10)0.0040 (10)
C120.0423 (8)0.0491 (9)0.0665 (12)−0.0049 (7)−0.0047 (8)0.0034 (8)
C130.0599 (10)0.0607 (11)0.0646 (13)0.0022 (8)0.0130 (9)0.0007 (9)
C140.0708 (11)0.0570 (10)0.0596 (12)0.0019 (9)0.0029 (10)0.0135 (9)
N10.0495 (8)0.0641 (9)0.0543 (9)0.0008 (7)0.0061 (7)0.0091 (7)
N20.0680 (9)0.0699 (9)0.0601 (10)−0.0009 (8)0.0042 (8)−0.0023 (8)
N30.0561 (8)0.0491 (7)0.0682 (11)0.0080 (7)−0.0015 (8)0.0022 (8)
N40.0669 (9)0.0537 (8)0.0709 (11)0.0047 (8)0.0043 (8)0.0025 (8)
O10.0878 (9)0.0774 (9)0.0887 (11)−0.0004 (7)−0.0012 (8)0.0027 (8)
O20.0867 (10)0.0885 (10)0.1433 (16)0.0021 (8)0.0031 (10)−0.0361 (10)
C1—N11.335 (2)C9—C101.369 (3)
C1—C21.352 (3)C9—H90.9300
C1—H10.9300C10—N41.331 (2)
C2—C31.367 (3)C10—H100.9300
C2—H20.9300C11—N31.459 (2)
C3—N21.322 (2)C11—C121.517 (2)
C3—H30.9300C11—H110.9700
C4—N11.460 (2)C11—H120.9700
C4—C51.510 (2)C12—C131.373 (2)
C4—H40.9700C12—C141.375 (2)
C4—H50.9700C13—C14ii1.380 (2)
C5—C61.375 (3)C13—H130.9300
C5—C71.381 (2)C14—C13ii1.380 (2)
C6—C7i1.374 (3)C14—H140.9300
C6—H60.9300N1—N21.345 (2)
C7—C6i1.374 (3)N3—N41.348 (2)
C7—H70.9300O1—H150.8500
C8—N31.339 (2)O1—H160.8500
C8—C91.361 (3)O2—H170.8500
C8—H80.9300O2—H180.8500
N1—C1—C2107.56 (18)C10—C9—H9127.6
N1—C1—H1126.2N4—C10—C9112.01 (18)
C2—C1—H1126.2N4—C10—H10124.0
C1—C2—C3104.84 (18)C9—C10—H10124.0
C1—C2—H2127.6N3—C11—C12111.94 (14)
C3—C2—H2127.6N3—C11—H11109.2
N2—C3—C2112.08 (19)C12—C11—H11109.2
N2—C3—H3124.0N3—C11—H12109.2
C2—C3—H3124.0C12—C11—H12109.2
N1—C4—C5111.25 (14)H11—C11—H12107.9
N1—C4—H4109.4C13—C12—C14118.04 (16)
C5—C4—H4109.4C13—C12—C11120.95 (17)
N1—C4—H5109.4C14—C12—C11121.00 (16)
C5—C4—H5109.4C12—C13—C14ii121.16 (16)
H4—C4—H5108.0C12—C13—H13119.4
C6—C5—C7118.11 (16)C14ii—C13—H13119.4
C6—C5—C4120.89 (17)C12—C14—C13ii120.80 (16)
C7—C5—C4120.97 (18)C12—C14—H14119.6
C7i—C6—C5121.54 (17)C13ii—C14—H14119.6
C7i—C6—H6119.2C1—N1—N2111.26 (16)
C5—C6—H6119.2C1—N1—C4128.31 (17)
C6i—C7—C5120.36 (17)N2—N1—C4119.92 (15)
C6i—C7—H7119.8C3—N2—N1104.26 (16)
C5—C7—H7119.8C8—N3—N4111.25 (16)
N3—C8—C9107.6 (2)C8—N3—C11128.06 (17)
N3—C8—H8126.2N4—N3—C11120.37 (16)
C9—C8—H8126.2C10—N4—N3104.34 (16)
C8—C9—C10104.80 (19)H15—O1—H16105.7
C8—C9—H9127.6H17—O2—H18108.3
D—H···AD—HH···AD···AD—H···A
O1—H15···N40.852.082.929 (3)178
O1—H16···O2iii0.851.872.717 (2)177
O2—H17···N2i0.852.082.923 (2)170
O2—H18···O10.851.892.733 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H15⋯N40.852.082.929 (3)178
O1—H16⋯O2i0.851.872.717 (2)177
O2—H17⋯N2ii0.852.082.923 (2)170
O2—H18⋯O10.851.892.733 (2)172

Symmetry codes: (i) ; (ii) .

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