Literature DB >> 21582412

2-Chloro-methyl-2,3-dihydro-thieno[3,4-b][1,4]dioxine.

Jian Xu1, Hao Xu, Ji-Cai Quan, Fei Sha, Cheng Yao.   

Abstract

In the mol-ecule of the title compound, C(7)H(7)ClO(2)S, the six-membered ring adopts a twisted conformation. In the crystal structure, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules. There is also a weak C-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21582412      PMCID: PMC2968817          DOI: 10.1107/S1600536809007156

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Jose et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C7H7ClO2S M = 190.64 Monoclinic, a = 10.227 (2) Å b = 5.7500 (12) Å c = 14.376 (3) Å β = 105.55 (3)° V = 814.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.67 mm−1 T = 294 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.825, T max = 0.936 1565 measured reflections 1479 independent reflections 1065 reflections with I > 2σ(I) R int = 0.067 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.185 S = 1.01 1479 reflections 100 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809007156/hk2630sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007156/hk2630Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7ClO2SF(000) = 392
Mr = 190.64Dx = 1.555 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 10.227 (2) Åθ = 10–13°
b = 5.7500 (12) ŵ = 0.67 mm1
c = 14.376 (3) ÅT = 294 K
β = 105.55 (3)°Block, colorless
V = 814.4 (3) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1065 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.067
graphiteθmax = 25.4°, θmin = 2.2°
ω/2θ scansh = 0→12
Absorption correction: ψ scan (North et al., 1968)k = 0→6
Tmin = 0.825, Tmax = 0.936l = −17→16
1565 measured reflections3 standard reflections every 120 min
1479 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1P)2 + 0.92P] where P = (Fo2 + 2Fc2)/3
1479 reflections(Δ/σ)max < 0.001
100 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl−0.37084 (12)0.1937 (2)0.51615 (9)0.0759 (5)
S0.12047 (12)0.1840 (2)0.27636 (9)0.0740 (5)
O1−0.1425 (3)0.6480 (5)0.29741 (19)0.0619 (8)
O2−0.1277 (2)0.2762 (4)0.43358 (19)0.0505 (7)
C1−0.2959 (4)0.4560 (8)0.4923 (3)0.0569 (10)
H1A−0.36360.57860.48050.068*
H1B−0.22380.49910.54860.068*
C2−0.2397 (4)0.4363 (7)0.4079 (3)0.0524 (9)
H2A−0.30960.37290.35310.063*
C3−0.1903 (4)0.6650 (6)0.3787 (3)0.0539 (10)
H3A−0.26410.77650.36630.065*
H3B−0.11810.72360.43200.065*
C4−0.0539 (4)0.4634 (7)0.3034 (3)0.0515 (9)
C5−0.0507 (4)0.2828 (6)0.3683 (3)0.0477 (9)
C60.0309 (4)0.4363 (8)0.2481 (3)0.0632 (11)
H6A0.04000.54050.20080.076*
C70.0424 (4)0.1179 (7)0.3626 (3)0.0591 (10)
H7A0.0605−0.01430.40120.071*
U11U22U33U12U13U23
Cl0.0794 (8)0.0787 (9)0.0741 (8)−0.0128 (6)0.0285 (6)−0.0007 (6)
S0.0758 (8)0.0812 (9)0.0696 (8)0.0012 (6)0.0275 (6)−0.0095 (6)
O10.0693 (18)0.0601 (18)0.0461 (16)0.0112 (14)−0.0024 (13)0.0218 (13)
O20.0571 (15)0.0440 (14)0.0484 (15)0.0044 (12)0.0110 (12)0.0090 (12)
C10.061 (2)0.066 (3)0.0370 (19)−0.005 (2)0.0014 (17)−0.0062 (18)
C20.051 (2)0.053 (2)0.042 (2)−0.0049 (17)−0.0081 (16)−0.0067 (17)
C30.068 (2)0.047 (2)0.040 (2)0.0146 (18)0.0034 (17)0.0132 (17)
C40.055 (2)0.057 (2)0.0329 (18)−0.0073 (18)−0.0059 (16)0.0042 (17)
C50.059 (2)0.044 (2)0.0355 (18)−0.0114 (17)0.0042 (15)−0.0069 (16)
C60.069 (3)0.073 (3)0.044 (2)−0.004 (2)0.0078 (19)0.006 (2)
C70.064 (2)0.051 (2)0.059 (2)0.0111 (19)0.012 (2)0.001 (2)
Cl—C11.766 (4)C2—C31.508 (5)
S—C71.688 (4)C2—H2A0.9800
S—C61.706 (5)C3—H3A0.9700
O1—C41.384 (5)C3—H3B0.9700
O1—C31.386 (5)C4—C61.333 (5)
O2—C51.377 (5)C4—C51.391 (5)
O2—C21.439 (5)C5—C71.362 (5)
C1—C21.480 (5)C6—H6A0.9300
C1—H1A0.9700C7—H7A0.9300
C1—H1B0.9700
C7—S—C692.1 (2)C2—C3—H3A108.9
C4—O1—C3112.0 (3)O1—C3—H3B108.9
C5—O2—C2111.6 (3)C2—C3—H3B108.9
C2—C1—Cl112.2 (3)H3A—C3—H3B107.8
C2—C1—H1A109.2C6—C4—O1124.9 (4)
Cl—C1—H1A109.2C6—C4—C5114.3 (4)
C2—C1—H1B109.2O1—C4—C5120.8 (3)
Cl—C1—H1B109.2C7—C5—O2124.0 (3)
H1A—C1—H1B107.9C7—C5—C4111.7 (4)
O2—C2—C1107.2 (3)O2—C5—C4124.3 (3)
O2—C2—C3109.0 (3)C4—C6—S110.5 (3)
C1—C2—C3113.2 (3)C4—C6—H6A124.7
O2—C2—H2A109.1S—C6—H6A124.7
C1—C2—H2A109.1C5—C7—S111.3 (3)
C3—C2—H2A109.1C5—C7—H7A124.3
O1—C3—C2113.2 (3)S—C7—H7A124.3
O1—C3—H3A108.9
C5—O2—C2—C1−167.2 (3)C6—C4—C5—C71.5 (5)
C5—O2—C2—C3−44.3 (4)O1—C4—C5—C7179.5 (3)
Cl—C1—C2—O2−66.6 (3)C6—C4—C5—O2178.7 (3)
Cl—C1—C2—C3173.1 (3)O1—C4—C5—O2−3.2 (5)
C4—O1—C3—C2−48.0 (4)O1—C4—C6—S−178.8 (3)
O2—C2—C3—O163.1 (4)C5—C4—C6—S−0.8 (5)
C1—C2—C3—O1−177.6 (3)C7—S—C6—C40.0 (3)
C3—O1—C4—C6−163.6 (4)O2—C5—C7—S−178.7 (3)
C3—O1—C4—C518.6 (5)C4—C5—C7—S−1.4 (4)
C2—O2—C5—C7−165.2 (4)C6—S—C7—C50.8 (3)
C2—O2—C5—C417.9 (5)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.982.453.317 (5)146
C1—H1B···Cg1ii0.972.753.708 (5)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.982.453.317 (5)146
C1—H1BCg1ii0.972.753.708 (5)168

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the S/C4–C7 ring.

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