| Literature DB >> 21582406 |
Reza Kia, Hoong-Kun Fun, Hadi Kargar.
Abstract
In the title compound, C(22)H(14)N(4), a new substituted benzimidazole, three inter-molecular C-H⋯N inter-actions link neighbouring mol-ecules into different dimers with R(2) (2)(12), R(2) (2)(8) and R(2) (2)(24) ring motifs. A fourth C-H⋯N inter-action links neighbouring mol-ecules along the c axis. There is also a short inter-molecular contact between the azomethine (C=N) segment of the benzimidazole ring and one of the C atoms of a neighbouring benzene ring [N⋯C = 3.191 (5), C⋯C = 3.364 (6) Å], which links the mol-ecules along the a axis. The two cyano-benzene rings are almost perpendicular to each other, with an inter-planar angle of 87.70 (7)°. The dihedral angles between the mean planes of the benzimidazole ring and the two outer benzene rings are 36.27 (16) and 86.70 (16)°. In the crystal structure, mol-ecules are stacked down the a axis with centroid-centroid distances of 3.906 (2)-3.912 (2) Å and inter-planar distances of 3.5040 (17) and 3.6235 (17) Å.Entities:
Year: 2009 PMID: 21582406 PMCID: PMC2969064 DOI: 10.1107/S1600536809006989
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H14N4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3931 reflections |
| θ = 2.4–30.2° | |
| µ = 0.08 mm−1 | |
| β = 97.653 (5)° | Needle, colourless |
| 0.45 × 0.09 × 0.04 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2906 independent reflections |
| Radiation source: fine-focus sealed tube | 1490 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 15641 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2906 reflections | Δρmax = 0.26 e Å−3 |
| 236 parameters | Δρmin = −0.35 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0124 (18) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.7041 (7) | 0.41520 (18) | 0.10705 (18) | 0.0222 (9) | |
| N2 | 0.8001 (6) | 0.29462 (17) | 0.14467 (17) | 0.0196 (9) | |
| N3 | 1.5730 (8) | 0.3343 (2) | −0.1704 (2) | 0.0366 (11) | |
| N4 | 0.1768 (8) | −0.0990 (2) | 0.05749 (19) | 0.0328 (10) | |
| C1 | 0.5702 (8) | 0.3997 (2) | 0.1633 (2) | 0.0205 (10) | |
| C2 | 0.3933 (8) | 0.4456 (2) | 0.1943 (2) | 0.0250 (11) | |
| H2A | 0.3510 | 0.4953 | 0.1787 | 0.030* | |
| C3 | 0.2841 (8) | 0.4148 (2) | 0.2487 (2) | 0.0271 (11) | |
| H3A | 0.1639 | 0.4441 | 0.2697 | 0.033* | |
| C4 | 0.3485 (8) | 0.3408 (2) | 0.2733 (2) | 0.0272 (11) | |
| H4A | 0.2719 | 0.3223 | 0.3105 | 0.033* | |
| C5 | 0.5240 (8) | 0.2944 (2) | 0.2434 (2) | 0.0240 (11) | |
| H5A | 0.5681 | 0.2451 | 0.2597 | 0.029* | |
| C6 | 0.6310 (8) | 0.3255 (2) | 0.1876 (2) | 0.0197 (10) | |
| C7 | 0.8349 (8) | 0.3516 (2) | 0.0971 (2) | 0.0196 (10) | |
| C8 | 0.9937 (8) | 0.3425 (2) | 0.0400 (2) | 0.0183 (10) | |
| C9 | 1.0085 (8) | 0.2747 (2) | 0.0032 (2) | 0.0206 (11) | |
| H9A | 0.9193 | 0.2310 | 0.0153 | 0.025* | |
| C10 | 1.1554 (8) | 0.2718 (2) | −0.0515 (2) | 0.0248 (11) | |
| H10A | 1.1656 | 0.2262 | −0.0758 | 0.030* | |
| C11 | 1.2870 (8) | 0.3372 (2) | −0.0697 (2) | 0.0207 (11) | |
| C12 | 1.2703 (8) | 0.4059 (2) | −0.0344 (2) | 0.0228 (11) | |
| H12A | 1.3561 | 0.4499 | −0.0473 | 0.027* | |
| C13 | 1.1248 (8) | 0.4079 (2) | 0.0200 (2) | 0.0229 (11) | |
| H13A | 1.1135 | 0.4538 | 0.0439 | 0.027* | |
| C14 | 0.9363 (8) | 0.2212 (2) | 0.1570 (2) | 0.0221 (11) | |
| H14A | 0.9987 | 0.2167 | 0.2057 | 0.026* | |
| H14B | 1.0918 | 0.2209 | 0.1329 | 0.026* | |
| C15 | 0.7667 (8) | 0.1513 (2) | 0.1346 (2) | 0.0193 (10) | |
| C16 | 0.8439 (8) | 0.0795 (2) | 0.1615 (2) | 0.0232 (11) | |
| H16A | 0.9962 | 0.0751 | 0.1935 | 0.028* | |
| C17 | 0.6958 (8) | 0.0145 (2) | 0.1410 (2) | 0.0256 (11) | |
| H17A | 0.7492 | −0.0336 | 0.1589 | 0.031* | |
| C18 | 0.4669 (8) | 0.0212 (2) | 0.0936 (2) | 0.0217 (11) | |
| C19 | 0.3883 (8) | 0.0931 (2) | 0.0667 (2) | 0.0228 (11) | |
| H19A | 0.2349 | 0.0978 | 0.0351 | 0.027* | |
| C20 | 0.5388 (8) | 0.1572 (2) | 0.0871 (2) | 0.0208 (10) | |
| H20A | 0.4869 | 0.2052 | 0.0687 | 0.025* | |
| C21 | 1.4437 (9) | 0.3350 (2) | −0.1261 (3) | 0.0281 (12) | |
| C22 | 0.3071 (9) | −0.0458 (2) | 0.0734 (2) | 0.0256 (11) |
| N1 | 0.028 (2) | 0.016 (2) | 0.023 (2) | 0.0017 (16) | 0.0025 (19) | −0.0006 (16) |
| N2 | 0.026 (2) | 0.0127 (19) | 0.019 (2) | 0.0003 (15) | 0.0024 (18) | −0.0026 (16) |
| N3 | 0.043 (3) | 0.031 (2) | 0.036 (3) | −0.0030 (19) | 0.006 (2) | −0.001 (2) |
| N4 | 0.045 (3) | 0.027 (2) | 0.027 (2) | −0.006 (2) | 0.006 (2) | −0.0006 (18) |
| C1 | 0.026 (2) | 0.016 (3) | 0.019 (3) | −0.0022 (19) | 0.003 (2) | −0.003 (2) |
| C2 | 0.029 (3) | 0.015 (2) | 0.030 (3) | 0.003 (2) | 0.000 (2) | −0.006 (2) |
| C3 | 0.025 (2) | 0.031 (3) | 0.027 (3) | −0.004 (2) | 0.007 (2) | −0.006 (2) |
| C4 | 0.032 (3) | 0.026 (3) | 0.026 (3) | −0.008 (2) | 0.008 (2) | −0.006 (2) |
| C5 | 0.028 (3) | 0.019 (2) | 0.024 (3) | −0.003 (2) | −0.002 (2) | −0.003 (2) |
| C6 | 0.024 (2) | 0.016 (2) | 0.018 (3) | −0.0035 (19) | 0.001 (2) | −0.005 (2) |
| C7 | 0.021 (2) | 0.017 (2) | 0.019 (3) | −0.0054 (19) | −0.005 (2) | 0.000 (2) |
| C8 | 0.021 (2) | 0.015 (2) | 0.019 (3) | 0.0019 (18) | 0.001 (2) | 0.003 (2) |
| C9 | 0.023 (2) | 0.016 (3) | 0.023 (3) | −0.0008 (18) | 0.003 (2) | 0.004 (2) |
| C10 | 0.032 (3) | 0.022 (3) | 0.019 (3) | 0.002 (2) | −0.001 (2) | −0.001 (2) |
| C11 | 0.022 (2) | 0.021 (3) | 0.020 (3) | 0.0000 (19) | 0.004 (2) | 0.005 (2) |
| C12 | 0.031 (3) | 0.017 (3) | 0.021 (3) | −0.0037 (19) | 0.004 (2) | −0.002 (2) |
| C13 | 0.031 (3) | 0.015 (2) | 0.022 (3) | 0.002 (2) | 0.002 (2) | −0.002 (2) |
| C14 | 0.023 (2) | 0.021 (2) | 0.023 (3) | 0.0009 (19) | 0.003 (2) | 0.0011 (19) |
| C15 | 0.023 (3) | 0.016 (2) | 0.019 (3) | 0.0013 (18) | 0.005 (2) | −0.0030 (19) |
| C16 | 0.026 (2) | 0.020 (2) | 0.024 (3) | −0.001 (2) | 0.004 (2) | 0.001 (2) |
| C17 | 0.026 (3) | 0.019 (2) | 0.032 (3) | 0.003 (2) | 0.004 (3) | 0.001 (2) |
| C18 | 0.026 (3) | 0.017 (2) | 0.024 (3) | −0.0035 (19) | 0.010 (2) | −0.004 (2) |
| C19 | 0.021 (2) | 0.024 (3) | 0.022 (3) | 0.000 (2) | 0.001 (2) | 0.001 (2) |
| C20 | 0.027 (3) | 0.015 (2) | 0.021 (3) | 0.0006 (19) | 0.004 (2) | −0.0002 (19) |
| C21 | 0.035 (3) | 0.019 (3) | 0.030 (3) | −0.003 (2) | 0.003 (3) | 0.000 (2) |
| C22 | 0.033 (3) | 0.023 (3) | 0.022 (3) | −0.001 (2) | 0.007 (2) | 0.002 (2) |
| N1—C7 | 1.314 (5) | C10—C11 | 1.385 (5) |
| N1—C1 | 1.397 (5) | C10—H10A | 0.9300 |
| N2—C6 | 1.385 (5) | C11—C12 | 1.387 (5) |
| N2—C7 | 1.387 (5) | C11—C21 | 1.446 (6) |
| N2—C14 | 1.453 (5) | C12—C13 | 1.376 (5) |
| N3—C21 | 1.155 (5) | C12—H12A | 0.9300 |
| N4—C22 | 1.152 (5) | C13—H13A | 0.9300 |
| C1—C6 | 1.391 (5) | C14—C15 | 1.515 (5) |
| C1—C2 | 1.397 (5) | C14—H14A | 0.9700 |
| C2—C3 | 1.375 (6) | C14—H14B | 0.9700 |
| C2—H2A | 0.9300 | C15—C20 | 1.386 (5) |
| C3—C4 | 1.393 (6) | C15—C16 | 1.388 (5) |
| C3—H3A | 0.9300 | C16—C17 | 1.384 (5) |
| C4—C5 | 1.385 (6) | C16—H16A | 0.9300 |
| C4—H4A | 0.9300 | C17—C18 | 1.390 (5) |
| C5—C6 | 1.394 (6) | C17—H17A | 0.9300 |
| C5—H5A | 0.9300 | C18—C19 | 1.391 (5) |
| C7—C8 | 1.472 (6) | C18—C22 | 1.440 (6) |
| C8—C9 | 1.387 (5) | C19—C20 | 1.377 (5) |
| C8—C13 | 1.397 (5) | C19—H19A | 0.9300 |
| C9—C10 | 1.385 (5) | C20—H20A | 0.9300 |
| C9—H9A | 0.9300 | ||
| C7—N1—C1 | 105.2 (3) | C10—C11—C21 | 120.6 (4) |
| C6—N2—C7 | 106.1 (3) | C12—C11—C21 | 118.8 (4) |
| C6—N2—C14 | 123.7 (3) | C13—C12—C11 | 119.0 (4) |
| C7—N2—C14 | 129.6 (3) | C13—C12—H12A | 120.5 |
| C6—C1—C2 | 120.2 (4) | C11—C12—H12A | 120.5 |
| C6—C1—N1 | 109.9 (4) | C12—C13—C8 | 121.3 (4) |
| C2—C1—N1 | 129.8 (4) | C12—C13—H13A | 119.3 |
| C3—C2—C1 | 117.6 (4) | C8—C13—H13A | 119.3 |
| C3—C2—H2A | 121.2 | N2—C14—C15 | 114.6 (3) |
| C1—C2—H2A | 121.2 | N2—C14—H14A | 108.6 |
| C2—C3—C4 | 121.8 (4) | C15—C14—H14A | 108.6 |
| C2—C3—H3A | 119.1 | N2—C14—H14B | 108.6 |
| C4—C3—H3A | 119.1 | C15—C14—H14B | 108.6 |
| C5—C4—C3 | 121.5 (4) | H14A—C14—H14B | 107.6 |
| C5—C4—H4A | 119.3 | C20—C15—C16 | 119.3 (4) |
| C3—C4—H4A | 119.3 | C20—C15—C14 | 121.6 (3) |
| C4—C5—C6 | 116.4 (4) | C16—C15—C14 | 119.2 (4) |
| C4—C5—H5A | 121.8 | C17—C16—C15 | 120.4 (4) |
| C6—C5—H5A | 121.8 | C17—C16—H16A | 119.8 |
| N2—C6—C1 | 106.0 (4) | C15—C16—H16A | 119.8 |
| N2—C6—C5 | 131.6 (4) | C16—C17—C18 | 119.7 (4) |
| C1—C6—C5 | 122.4 (4) | C16—C17—H17A | 120.1 |
| N1—C7—N2 | 112.7 (4) | C18—C17—H17A | 120.1 |
| N1—C7—C8 | 122.6 (4) | C17—C18—C19 | 120.0 (4) |
| N2—C7—C8 | 124.6 (4) | C17—C18—C22 | 120.2 (4) |
| C9—C8—C13 | 118.8 (4) | C19—C18—C22 | 119.8 (4) |
| C9—C8—C7 | 124.0 (4) | C20—C19—C18 | 119.6 (4) |
| C13—C8—C7 | 117.1 (4) | C20—C19—H19A | 120.2 |
| C10—C9—C8 | 120.4 (4) | C18—C19—H19A | 120.2 |
| C10—C9—H9A | 119.8 | C19—C20—C15 | 120.9 (4) |
| C8—C9—H9A | 119.8 | C19—C20—H20A | 119.6 |
| C9—C10—C11 | 119.8 (4) | C15—C20—H20A | 119.6 |
| C9—C10—H10A | 120.1 | N3—C21—C11 | 178.5 (5) |
| C11—C10—H10A | 120.1 | N4—C22—C18 | 179.2 (5) |
| C10—C11—C12 | 120.7 (4) | ||
| C7—N1—C1—C6 | 1.5 (4) | N2—C7—C8—C13 | −147.4 (4) |
| C7—N1—C1—C2 | −177.1 (4) | C13—C8—C9—C10 | 1.3 (6) |
| C6—C1—C2—C3 | −0.1 (6) | C7—C8—C9—C10 | 177.7 (4) |
| N1—C1—C2—C3 | 178.4 (4) | C8—C9—C10—C11 | −0.3 (6) |
| C1—C2—C3—C4 | 0.9 (6) | C9—C10—C11—C12 | −0.9 (6) |
| C2—C3—C4—C5 | −0.7 (6) | C9—C10—C11—C21 | 179.3 (4) |
| C3—C4—C5—C6 | −0.3 (6) | C10—C11—C12—C13 | 1.2 (6) |
| C7—N2—C6—C1 | 0.4 (4) | C21—C11—C12—C13 | −179.0 (4) |
| C14—N2—C6—C1 | 172.4 (3) | C11—C12—C13—C8 | −0.2 (6) |
| C7—N2—C6—C5 | 178.7 (4) | C9—C8—C13—C12 | −1.0 (6) |
| C14—N2—C6—C5 | −9.3 (6) | C7—C8—C13—C12 | −177.7 (4) |
| C2—C1—C6—N2 | 177.5 (3) | C6—N2—C14—C15 | 81.2 (5) |
| N1—C1—C6—N2 | −1.2 (4) | C7—N2—C14—C15 | −108.9 (4) |
| C2—C1—C6—C5 | −1.0 (6) | N2—C14—C15—C20 | 20.2 (5) |
| N1—C1—C6—C5 | −179.7 (4) | N2—C14—C15—C16 | −160.9 (4) |
| C4—C5—C6—N2 | −177.0 (4) | C20—C15—C16—C17 | 0.2 (6) |
| C4—C5—C6—C1 | 1.1 (6) | C14—C15—C16—C17 | −178.7 (4) |
| C1—N1—C7—N2 | −1.3 (4) | C15—C16—C17—C18 | −0.6 (6) |
| C1—N1—C7—C8 | 177.1 (3) | C16—C17—C18—C19 | 0.4 (6) |
| C6—N2—C7—N1 | 0.5 (4) | C16—C17—C18—C22 | −178.2 (4) |
| C14—N2—C7—N1 | −170.8 (4) | C17—C18—C19—C20 | 0.2 (6) |
| C6—N2—C7—C8 | −177.8 (4) | C22—C18—C19—C20 | 178.7 (4) |
| C14—N2—C7—C8 | 10.9 (6) | C18—C19—C20—C15 | −0.6 (6) |
| N1—C7—C8—C9 | −142.1 (4) | C16—C15—C20—C19 | 0.3 (6) |
| N2—C7—C8—C9 | 36.1 (6) | C14—C15—C20—C19 | 179.3 (4) |
| N1—C7—C8—C13 | 34.4 (5) |
| H··· | ||||
| C12—H12A···N1i | 0.93 | 2.62 | 3.425 (5) | 146 |
| C19—H19A···N4ii | 0.93 | 2.57 | 3.502 (6) | 175 |
| C9—H9A···N4iii | 0.93 | 2.71 | 3.361 (5) | 128 |
| C14—H14A···N3iv | 0.97 | 2.57 | 3.502 (5) | 162 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C12—H12 | 0.93 | 2.62 | 3.425 (5) | 146 |
| C19—H19 | 0.93 | 2.57 | 3.502 (6) | 175 |
| C9—H9 | 0.93 | 2.71 | 3.361 (5) | 128 |
| C14—H14 | 0.97 | 2.57 | 3.502 (5) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .