| Literature DB >> 21582287 |
Qian Zhang1, Yuan-Hong Jiao, Bin Liu, Xue-Mei Chen, Min Ruan, Ling-Hua Xu.
Abstract
The mol-ecular and crystal structures of the title compound, C(16)H(14)FN(3)O(2), are stabilized by intra-molecular N-H⋯O and inter-molecular O-H⋯O hydrogen bonds. The existence of non-classical intra-molecular C-H⋯N hydrogen bonds provides a dihedral angle between the fluoro-substituted benzene and pyrimidinone rings of 7.9 (1)°.Entities:
Year: 2009 PMID: 21582287 PMCID: PMC2968625 DOI: 10.1107/S1600536809006254
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H14FN3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3320 reflections |
| θ = 2.3–29.2° | |
| µ = 0.11 mm−1 | |
| β = 104.407 (1)° | Block, colourless |
| 0.10 × 0.10 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 2475 reflections with |
| Radiation source: Fine–focus sealed tube | |
| Graphite | θmax = 27.0°, θmin = 2.3° |
| φ and ω scans | |
| 8342 measured reflections | |
| 2976 independent reflections |
| Refinement on | Primary atom site location: Direct |
| Least-squares matrix: Full | Secondary atom site location: Difmap |
| Hydrogen site location: Geom | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2976 reflections | (Δ/σ)max = 0.001 |
| 205 parameters | Δρmax = 0.13 e Å−3 |
| 2 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.56770 (14) | 0.34529 (11) | −0.09177 (9) | 0.0442 (3) | |
| C2 | 0.59291 (15) | 0.34162 (11) | 0.00070 (9) | 0.0455 (3) | |
| H2 | 0.5444 | 0.2813 | 0.0283 | 0.055* | |
| C3 | 0.69136 (15) | 0.42908 (11) | 0.05135 (8) | 0.0427 (3) | |
| H3 | 0.7096 | 0.4276 | 0.1141 | 0.051* | |
| C4 | 0.76459 (13) | 0.52003 (10) | 0.01077 (8) | 0.0379 (3) | |
| C5 | 0.73709 (15) | 0.52084 (12) | −0.08302 (8) | 0.0438 (3) | |
| H5 | 0.7852 | 0.5807 | −0.1113 | 0.053* | |
| C6 | 0.63794 (15) | 0.43247 (12) | −0.13419 (8) | 0.0458 (3) | |
| H6 | 0.6193 | 0.4325 | −0.1969 | 0.055* | |
| C7 | 0.94732 (13) | 0.70237 (10) | 0.05017 (7) | 0.0377 (3) | |
| C8 | 1.13407 (14) | 0.86392 (11) | 0.11798 (8) | 0.0418 (3) | |
| C9 | 1.15360 (14) | 0.88561 (11) | 0.02741 (8) | 0.0402 (3) | |
| C10 | 1.06202 (13) | 0.81559 (11) | −0.04382 (8) | 0.0389 (3) | |
| C11 | 1.08192 (15) | 0.83508 (12) | −0.13148 (8) | 0.0462 (3) | |
| H11 | 1.0220 | 0.7892 | −0.1798 | 0.055* | |
| C12 | 1.18945 (16) | 0.92159 (13) | −0.14591 (9) | 0.0520 (3) | |
| H12 | 1.2025 | 0.9334 | −0.2041 | 0.062* | |
| C13 | 1.27943 (17) | 0.99209 (13) | −0.07485 (10) | 0.0549 (3) | |
| H13 | 1.3514 | 1.0510 | −0.0857 | 0.066* | |
| C14 | 1.26168 (16) | 0.97446 (12) | 0.01099 (10) | 0.0504 (3) | |
| H14 | 1.3215 | 1.0216 | 0.0586 | 0.060* | |
| C15 | 0.97517 (16) | 0.76912 (12) | 0.21207 (8) | 0.0450 (3) | |
| H15A | 0.8617 | 0.7484 | 0.1999 | 0.054* | |
| H15B | 0.9889 | 0.8505 | 0.2395 | 0.054* | |
| C16 | 1.06872 (18) | 0.67775 (13) | 0.27916 (8) | 0.0526 (3) | |
| H16A | 1.1828 | 0.6861 | 0.2827 | 0.063* | |
| H16B | 1.0521 | 0.6944 | 0.3387 | 0.063* | |
| F1 | 0.46983 (11) | 0.25850 (8) | −0.14287 (6) | 0.0651 (3) | |
| N1 | 0.85952 (13) | 0.60633 (10) | 0.07009 (7) | 0.0439 (2) | |
| H1 | 0.8863 (16) | 0.5818 (12) | 0.1269 (6) | 0.053* | |
| N2 | 1.02153 (12) | 0.77481 (9) | 0.12481 (6) | 0.0393 (2) | |
| N3 | 0.96041 (12) | 0.72240 (9) | −0.03130 (6) | 0.0411 (2) | |
| O1 | 1.20713 (12) | 0.91951 (9) | 0.18653 (6) | 0.0565 (3) | |
| O2 | 1.01772 (12) | 0.55593 (9) | 0.25230 (6) | 0.0546 (3) | |
| H2A | 1.0973 (16) | 0.5093 (14) | 0.2698 (12) | 0.082* |
| C1 | 0.0436 (6) | 0.0404 (6) | 0.0481 (7) | −0.0004 (5) | 0.0105 (5) | −0.0022 (5) |
| C2 | 0.0492 (7) | 0.0396 (6) | 0.0504 (7) | 0.0018 (5) | 0.0174 (6) | 0.0082 (5) |
| C3 | 0.0499 (7) | 0.0442 (6) | 0.0356 (6) | 0.0072 (5) | 0.0135 (5) | 0.0067 (5) |
| C4 | 0.0379 (6) | 0.0404 (6) | 0.0360 (6) | 0.0046 (5) | 0.0104 (5) | 0.0012 (5) |
| C5 | 0.0492 (7) | 0.0480 (7) | 0.0357 (6) | −0.0038 (5) | 0.0132 (5) | 0.0024 (5) |
| C6 | 0.0508 (7) | 0.0519 (7) | 0.0352 (6) | −0.0028 (6) | 0.0114 (5) | −0.0017 (5) |
| C7 | 0.0370 (6) | 0.0411 (6) | 0.0333 (6) | 0.0052 (5) | 0.0058 (4) | 0.0015 (5) |
| C8 | 0.0416 (6) | 0.0426 (6) | 0.0409 (6) | 0.0040 (5) | 0.0094 (5) | −0.0044 (5) |
| C9 | 0.0388 (6) | 0.0399 (6) | 0.0420 (6) | 0.0059 (5) | 0.0102 (5) | 0.0020 (5) |
| C10 | 0.0377 (6) | 0.0406 (6) | 0.0376 (6) | 0.0065 (5) | 0.0080 (5) | 0.0053 (5) |
| C11 | 0.0476 (7) | 0.0538 (7) | 0.0351 (6) | 0.0046 (6) | 0.0060 (5) | 0.0081 (5) |
| C12 | 0.0531 (7) | 0.0602 (8) | 0.0442 (7) | 0.0058 (6) | 0.0149 (6) | 0.0147 (6) |
| C13 | 0.0513 (8) | 0.0542 (8) | 0.0607 (9) | −0.0035 (6) | 0.0168 (6) | 0.0112 (7) |
| C14 | 0.0489 (7) | 0.0483 (7) | 0.0536 (8) | −0.0022 (6) | 0.0121 (6) | −0.0010 (6) |
| C15 | 0.0535 (7) | 0.0494 (7) | 0.0348 (6) | 0.0053 (6) | 0.0160 (5) | −0.0031 (5) |
| C16 | 0.0621 (8) | 0.0616 (8) | 0.0327 (6) | 0.0034 (6) | 0.0092 (6) | −0.0009 (6) |
| F1 | 0.0736 (6) | 0.0599 (5) | 0.0592 (5) | −0.0229 (4) | 0.0116 (4) | −0.0068 (4) |
| N1 | 0.0521 (6) | 0.0494 (6) | 0.0297 (5) | −0.0036 (5) | 0.0092 (4) | 0.0026 (4) |
| N2 | 0.0434 (5) | 0.0436 (5) | 0.0316 (5) | 0.0037 (4) | 0.0104 (4) | −0.0013 (4) |
| N3 | 0.0436 (5) | 0.0456 (6) | 0.0331 (5) | 0.0000 (4) | 0.0077 (4) | 0.0028 (4) |
| O1 | 0.0601 (6) | 0.0639 (6) | 0.0450 (5) | −0.0115 (5) | 0.0123 (4) | −0.0152 (4) |
| O2 | 0.0629 (6) | 0.0552 (6) | 0.0421 (5) | 0.0091 (4) | 0.0062 (4) | 0.0055 (4) |
| C1—C6 | 1.3659 (17) | C9—C14 | 1.4007 (17) |
| C1—F1 | 1.3670 (14) | C10—N3 | 1.3771 (15) |
| C1—C2 | 1.3729 (18) | C10—C11 | 1.4050 (16) |
| C2—C3 | 1.3716 (18) | C11—C12 | 1.3699 (19) |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.3929 (16) | C12—C13 | 1.391 (2) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.3904 (16) | C13—C14 | 1.3683 (19) |
| C4—N1 | 1.4098 (15) | C13—H13 | 0.9300 |
| C5—C6 | 1.3846 (17) | C14—H14 | 0.9300 |
| C5—H5 | 0.9300 | C15—N2 | 1.4817 (14) |
| C6—H6 | 0.9300 | C15—C16 | 1.5035 (18) |
| C7—N3 | 1.2932 (14) | C15—H15A | 0.9700 |
| C7—N1 | 1.3616 (15) | C15—H15B | 0.9700 |
| C7—N2 | 1.3983 (15) | C16—O2 | 1.4174 (17) |
| C8—O1 | 1.2335 (14) | C16—H16A | 0.9700 |
| C8—N2 | 1.3866 (15) | C16—H16B | 0.9700 |
| C8—C9 | 1.4511 (16) | N1—H1 | 0.881 (9) |
| C9—C10 | 1.3952 (16) | O2—H2A | 0.837 (9) |
| C6—C1—F1 | 119.04 (11) | C12—C11—H11 | 120.0 |
| C6—C1—C2 | 122.08 (12) | C10—C11—H11 | 120.0 |
| F1—C1—C2 | 118.88 (11) | C11—C12—C13 | 120.99 (12) |
| C3—C2—C1 | 118.42 (11) | C11—C12—H12 | 119.5 |
| C3—C2—H2 | 120.8 | C13—C12—H12 | 119.5 |
| C1—C2—H2 | 120.8 | C14—C13—C12 | 119.76 (12) |
| C2—C3—C4 | 121.34 (11) | C14—C13—H13 | 120.1 |
| C2—C3—H3 | 119.3 | C12—C13—H13 | 120.1 |
| C4—C3—H3 | 119.3 | C13—C14—C9 | 120.19 (13) |
| C5—C4—C3 | 118.79 (11) | C13—C14—H14 | 119.9 |
| C5—C4—N1 | 125.37 (11) | C9—C14—H14 | 119.9 |
| C3—C4—N1 | 115.82 (10) | N2—C15—C16 | 114.93 (10) |
| C6—C5—C4 | 119.90 (11) | N2—C15—H15A | 108.5 |
| C6—C5—H5 | 120.0 | C16—C15—H15A | 108.5 |
| C4—C5—H5 | 120.0 | N2—C15—H15B | 108.5 |
| C1—C6—C5 | 119.46 (11) | C16—C15—H15B | 108.5 |
| C1—C6—H6 | 120.3 | H15A—C15—H15B | 107.5 |
| C5—C6—H6 | 120.3 | O2—C16—C15 | 109.98 (11) |
| N3—C7—N1 | 121.83 (11) | O2—C16—H16A | 109.7 |
| N3—C7—N2 | 123.86 (10) | C15—C16—H16A | 109.7 |
| N1—C7—N2 | 114.31 (10) | O2—C16—H16B | 109.7 |
| O1—C8—N2 | 119.47 (11) | C15—C16—H16B | 109.7 |
| O1—C8—C9 | 124.96 (11) | H16A—C16—H16B | 108.2 |
| N2—C8—C9 | 115.56 (10) | C7—N1—C4 | 128.75 (10) |
| C10—C9—C14 | 120.21 (11) | C7—N1—H1 | 115.3 (9) |
| C10—C9—C8 | 118.50 (11) | C4—N1—H1 | 113.5 (9) |
| C14—C9—C8 | 121.29 (11) | C8—N2—C7 | 120.89 (10) |
| N3—C10—C9 | 122.90 (10) | C8—N2—C15 | 116.33 (10) |
| N3—C10—C11 | 118.21 (11) | C7—N2—C15 | 122.56 (10) |
| C9—C10—C11 | 118.75 (11) | C7—N3—C10 | 117.72 (10) |
| C12—C11—C10 | 120.09 (12) | C16—O2—H2A | 107.5 (13) |
| C6—C1—C2—C3 | 0.31 (19) | C12—C13—C14—C9 | 0.1 (2) |
| F1—C1—C2—C3 | 179.97 (10) | C10—C9—C14—C13 | −0.76 (19) |
| C1—C2—C3—C4 | 0.08 (18) | C8—C9—C14—C13 | 179.16 (12) |
| C2—C3—C4—C5 | −0.34 (18) | N2—C15—C16—O2 | −74.18 (14) |
| C2—C3—C4—N1 | 178.41 (11) | N3—C7—N1—C4 | −3.84 (19) |
| C3—C4—C5—C6 | 0.23 (18) | N2—C7—N1—C4 | 176.74 (11) |
| N1—C4—C5—C6 | −178.39 (11) | C5—C4—N1—C7 | −3.0 (2) |
| F1—C1—C6—C5 | 179.92 (11) | C3—C4—N1—C7 | 178.32 (11) |
| C2—C1—C6—C5 | −0.42 (19) | O1—C8—N2—C7 | −174.16 (11) |
| C4—C5—C6—C1 | 0.14 (19) | C9—C8—N2—C7 | 6.98 (16) |
| O1—C8—C9—C10 | −179.80 (11) | O1—C8—N2—C15 | 11.04 (16) |
| N2—C8—C9—C10 | −1.02 (16) | C9—C8—N2—C15 | −167.81 (10) |
| O1—C8—C9—C14 | 0.28 (19) | N3—C7—N2—C8 | −9.29 (17) |
| N2—C8—C9—C14 | 179.06 (11) | N1—C7—N2—C8 | 170.11 (10) |
| C14—C9—C10—N3 | 176.35 (11) | N3—C7—N2—C15 | 165.17 (11) |
| C8—C9—C10—N3 | −3.57 (17) | N1—C7—N2—C15 | −15.43 (15) |
| C14—C9—C10—C11 | 0.73 (17) | C16—C15—N2—C8 | −94.13 (13) |
| C8—C9—C10—C11 | −179.20 (10) | C16—C15—N2—C7 | 91.16 (14) |
| N3—C10—C11—C12 | −175.91 (11) | N1—C7—N3—C10 | −174.89 (10) |
| C9—C10—C11—C12 | −0.08 (18) | N2—C7—N3—C10 | 4.47 (17) |
| C10—C11—C12—C13 | −0.6 (2) | C9—C10—N3—C7 | 1.96 (17) |
| C11—C12—C13—C14 | 0.5 (2) | C11—C10—N3—C7 | 177.61 (10) |
| H··· | ||||
| C5—H5···N3 | 0.93 | 2.28 | 2.8807 (16) | 122 |
| N1—H1···O2 | 0.88 (1) | 1.98 (1) | 2.8253 (14) | 160 (1) |
| O2—H2A···O1i | 0.84 (1) | 1.91 (1) | 2.7426 (13) | 174 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C5—H5⋯N3 | 0.93 | 2.28 | 2.8807 (16) | 122 |
| N1—H1⋯O2 | 0.881 (9) | 1.982 (10) | 2.8253 (14) | 159.7 (13) |
| O2—H2 | 0.837 (9) | 1.909 (10) | 2.7426 (13) | 173.6 (18) |
Symmetry code: (i) .