| Literature DB >> 21581094 |
Abstract
In the title mol-ecule, C(16)H(15)FN(4)O, the dihedral angle between the fluoro-substituted benzene ring and the pyrimidinone ring is 52.34 (7)°, while the dihedral angle between the fused benzene ring and the pyrimidinone ring is 3.30 (6)°. An intra-molecular N-H⋯N hydrogen bond may, in part, influence the conformation of the mol-ecule. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds and weak C-H⋯π(arene) inter-actions link pairs of mol-ecules into centrosymmetric dimers.Entities:
Year: 2008 PMID: 21581094 PMCID: PMC2959735 DOI: 10.1107/S1600536808035058
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H15FN4O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2276 reflections | |
| θ = 2.2–28.9° | |
| µ = 0.10 mm−1 | |
| α = 89.36 (1)° | |
| β = 80.537 (10)° | Block, colourless |
| γ = 77.163 (10)° | 0.20 × 0.10 × 0.10 mm |
| Bruker SMART APEX CCD diffractometer | 2726 independent reflections |
| Radiation source: fine-focus sealed tube | 2318 reflections with |
| graphite | |
| ω scans | θmax = 26.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | |
| 4078 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2726 reflections | Δρmax = 0.16 e Å−3 |
| 209 parameters | Δρmin = −0.15 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.033 (5) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.26560 (18) | 0.91647 (15) | 0.45066 (18) | 0.0596 (4) | |
| C2 | 0.1522 (2) | 0.87525 (15) | 0.37986 (16) | 0.0589 (4) | |
| H2 | 0.1451 | 0.9031 | 0.2863 | 0.071* | |
| C3 | 0.04783 (17) | 0.79107 (14) | 0.45047 (14) | 0.0503 (3) | |
| H3 | −0.0308 | 0.7624 | 0.4040 | 0.060* | |
| C4 | 0.05872 (15) | 0.74874 (13) | 0.58961 (14) | 0.0449 (3) | |
| C5 | 0.17665 (17) | 0.79171 (15) | 0.65820 (16) | 0.0536 (3) | |
| H5 | 0.1860 | 0.7632 | 0.7512 | 0.064* | |
| C6 | 0.28049 (18) | 0.87722 (16) | 0.58782 (18) | 0.0604 (4) | |
| H6 | 0.3590 | 0.9074 | 0.6333 | 0.073* | |
| C7 | −0.02621 (15) | 0.55612 (14) | 0.74400 (13) | 0.0424 (3) | |
| C8 | 0.15458 (16) | 0.37171 (14) | 0.83809 (13) | 0.0444 (3) | |
| C9 | 0.31903 (18) | 0.30166 (17) | 0.85105 (16) | 0.0573 (4) | |
| H9 | 0.4075 | 0.3440 | 0.8121 | 0.069* | |
| C10 | 0.3511 (2) | 0.17169 (18) | 0.92037 (17) | 0.0670 (4) | |
| H10 | 0.4613 | 0.1260 | 0.9272 | 0.080* | |
| C11 | 0.2208 (2) | 0.10669 (18) | 0.98092 (18) | 0.0690 (4) | |
| H11 | 0.2438 | 0.0177 | 1.0271 | 0.083* | |
| C12 | 0.0591 (2) | 0.17479 (17) | 0.97182 (16) | 0.0587 (4) | |
| H12 | −0.0284 | 0.1326 | 1.0136 | 0.070* | |
| C13 | 0.02374 (16) | 0.30663 (14) | 0.90063 (13) | 0.0459 (3) | |
| C14 | −0.14830 (17) | 0.37725 (15) | 0.88772 (14) | 0.0479 (3) | |
| C15 | −0.33989 (16) | 0.58408 (16) | 0.79762 (15) | 0.0523 (3) | |
| H15A | −0.3462 | 0.6893 | 0.8010 | 0.063* | |
| H15B | −0.4153 | 0.5613 | 0.8799 | 0.063* | |
| C16 | −0.39955 (16) | 0.54589 (16) | 0.66308 (16) | 0.0555 (4) | |
| H16A | −0.3651 | 0.4403 | 0.6447 | 0.067* | |
| H16B | −0.5212 | 0.5731 | 0.6772 | 0.067* | |
| F1 | 0.36536 (13) | 1.00298 (12) | 0.38271 (13) | 0.0901 (4) | |
| N1 | −0.06114 (14) | 0.67357 (13) | 0.65917 (13) | 0.0496 (3) | |
| H1 | −0.151 (2) | 0.6763 (17) | 0.6150 (16) | 0.060* | |
| N2 | 0.12716 (13) | 0.49763 (12) | 0.75954 (11) | 0.0459 (3) | |
| H4A | −0.2947 (19) | 0.5633 (17) | 0.4621 (17) | 0.055* | |
| H4B | −0.411 (2) | 0.6934 (17) | 0.5178 (15) | 0.055* | |
| N3 | −0.16619 (13) | 0.50507 (12) | 0.80814 (11) | 0.0448 (3) | |
| N4 | −0.33145 (16) | 0.62199 (16) | 0.53930 (14) | 0.0590 (3) | |
| O1 | −0.27139 (13) | 0.33072 (12) | 0.94041 (12) | 0.0654 (3) |
| C1 | 0.0477 (8) | 0.0456 (7) | 0.0809 (10) | −0.0143 (6) | 0.0073 (7) | 0.0107 (7) |
| C2 | 0.0648 (9) | 0.0473 (7) | 0.0579 (8) | −0.0098 (7) | 0.0053 (7) | 0.0068 (6) |
| C3 | 0.0511 (8) | 0.0419 (7) | 0.0559 (8) | −0.0093 (6) | −0.0050 (6) | 0.0015 (6) |
| C4 | 0.0364 (6) | 0.0387 (6) | 0.0566 (7) | −0.0069 (5) | −0.0015 (5) | 0.0050 (5) |
| C5 | 0.0434 (7) | 0.0536 (8) | 0.0647 (8) | −0.0136 (6) | −0.0081 (6) | 0.0092 (6) |
| C6 | 0.0413 (7) | 0.0536 (8) | 0.0880 (11) | −0.0148 (6) | −0.0097 (7) | 0.0079 (7) |
| C7 | 0.0381 (7) | 0.0470 (7) | 0.0433 (6) | −0.0146 (5) | −0.0034 (5) | 0.0022 (5) |
| C8 | 0.0434 (7) | 0.0514 (7) | 0.0409 (6) | −0.0159 (6) | −0.0071 (5) | 0.0053 (5) |
| C9 | 0.0435 (8) | 0.0697 (9) | 0.0620 (8) | −0.0185 (7) | −0.0115 (6) | 0.0179 (7) |
| C10 | 0.0518 (9) | 0.0761 (10) | 0.0731 (10) | −0.0097 (8) | −0.0183 (7) | 0.0242 (8) |
| C11 | 0.0698 (10) | 0.0655 (10) | 0.0738 (10) | −0.0170 (8) | −0.0177 (8) | 0.0287 (8) |
| C12 | 0.0584 (9) | 0.0619 (9) | 0.0592 (8) | −0.0235 (7) | −0.0063 (7) | 0.0159 (7) |
| C13 | 0.0462 (7) | 0.0517 (7) | 0.0421 (6) | −0.0177 (6) | −0.0050 (5) | 0.0039 (5) |
| C14 | 0.0447 (7) | 0.0547 (7) | 0.0460 (7) | −0.0201 (6) | −0.0007 (5) | 0.0026 (6) |
| C15 | 0.0348 (7) | 0.0582 (8) | 0.0595 (8) | −0.0086 (6) | 0.0028 (6) | 0.0021 (6) |
| C16 | 0.0334 (7) | 0.0580 (8) | 0.0755 (9) | −0.0106 (6) | −0.0095 (6) | 0.0043 (7) |
| F1 | 0.0763 (7) | 0.0820 (7) | 0.1149 (9) | −0.0407 (6) | 0.0059 (6) | 0.0289 (6) |
| N1 | 0.0379 (6) | 0.0532 (7) | 0.0607 (7) | −0.0154 (5) | −0.0099 (5) | 0.0125 (5) |
| N2 | 0.0382 (6) | 0.0514 (6) | 0.0498 (6) | −0.0157 (5) | −0.0054 (4) | 0.0094 (5) |
| N3 | 0.0353 (6) | 0.0517 (6) | 0.0476 (6) | −0.0142 (5) | −0.0013 (4) | 0.0029 (5) |
| N4 | 0.0429 (7) | 0.0710 (8) | 0.0621 (8) | −0.0101 (6) | −0.0096 (6) | 0.0019 (6) |
| O1 | 0.0476 (6) | 0.0723 (7) | 0.0788 (7) | −0.0275 (5) | 0.0011 (5) | 0.0166 (5) |
| C1—C2 | 1.362 (2) | C10—C11 | 1.392 (2) |
| C1—F1 | 1.3626 (16) | C10—H10 | 0.9300 |
| C1—C6 | 1.366 (2) | C11—C12 | 1.365 (2) |
| C2—C3 | 1.3819 (19) | C11—H11 | 0.9300 |
| C2—H2 | 0.9300 | C12—C13 | 1.3914 (19) |
| C3—C4 | 1.3859 (19) | C12—H12 | 0.9300 |
| C3—H3 | 0.9300 | C13—C14 | 1.4551 (19) |
| C4—C5 | 1.388 (2) | C14—O1 | 1.2254 (15) |
| C4—N1 | 1.4123 (16) | C14—N3 | 1.3955 (17) |
| C5—C6 | 1.3870 (19) | C15—N3 | 1.4821 (16) |
| C5—H5 | 0.9300 | C15—C16 | 1.516 (2) |
| C6—H6 | 0.9300 | C15—H15A | 0.9700 |
| C7—N2 | 1.2980 (16) | C15—H15B | 0.9700 |
| C7—N1 | 1.3581 (17) | C16—N4 | 1.464 (2) |
| C7—N3 | 1.3956 (15) | C16—H16A | 0.9700 |
| C8—N2 | 1.3785 (16) | C16—H16B | 0.9700 |
| C8—C9 | 1.3981 (19) | N1—H1 | 0.908 (17) |
| C8—C13 | 1.4023 (18) | N4—H4A | 0.889 (16) |
| C9—C10 | 1.366 (2) | N4—H4B | 0.872 (16) |
| C9—H9 | 0.9300 | ||
| C2—C1—F1 | 118.49 (14) | C10—C11—H11 | 120.3 |
| C2—C1—C6 | 122.61 (13) | C11—C12—C13 | 120.67 (14) |
| F1—C1—C6 | 118.88 (15) | C11—C12—H12 | 119.7 |
| C1—C2—C3 | 118.37 (14) | C13—C12—H12 | 119.7 |
| C1—C2—H2 | 120.8 | C12—C13—C8 | 120.13 (13) |
| C3—C2—H2 | 120.8 | C12—C13—C14 | 120.69 (12) |
| C2—C3—C4 | 120.93 (13) | C8—C13—C14 | 119.18 (12) |
| C2—C3—H3 | 119.5 | O1—C14—N3 | 120.70 (12) |
| C4—C3—H3 | 119.5 | O1—C14—C13 | 124.22 (13) |
| C3—C4—C5 | 119.19 (12) | N3—C14—C13 | 115.08 (11) |
| C3—C4—N1 | 117.79 (12) | N3—C15—C16 | 113.90 (11) |
| C5—C4—N1 | 122.81 (12) | N3—C15—H15A | 108.8 |
| C6—C5—C4 | 119.92 (14) | C16—C15—H15A | 108.8 |
| C6—C5—H5 | 120.0 | N3—C15—H15B | 108.8 |
| C4—C5—H5 | 120.0 | C16—C15—H15B | 108.8 |
| C1—C6—C5 | 118.98 (14) | H15A—C15—H15B | 107.7 |
| C1—C6—H6 | 120.5 | N4—C16—C15 | 111.68 (12) |
| C5—C6—H6 | 120.5 | N4—C16—H16A | 109.3 |
| N2—C7—N1 | 120.96 (11) | C15—C16—H16A | 109.3 |
| N2—C7—N3 | 124.41 (11) | N4—C16—H16B | 109.3 |
| N1—C7—N3 | 114.62 (11) | C15—C16—H16B | 109.3 |
| N2—C8—C9 | 119.28 (12) | H16A—C16—H16B | 107.9 |
| N2—C8—C13 | 122.38 (12) | C7—N1—C4 | 124.69 (11) |
| C9—C8—C13 | 118.27 (12) | C7—N1—H1 | 114.5 (10) |
| C10—C9—C8 | 120.65 (14) | C4—N1—H1 | 115.2 (10) |
| C10—C9—H9 | 119.7 | C7—N2—C8 | 117.77 (11) |
| C8—C9—H9 | 119.7 | C14—N3—C7 | 121.02 (11) |
| C9—C10—C11 | 120.84 (14) | C14—N3—C15 | 116.82 (11) |
| C9—C10—H10 | 119.6 | C7—N3—C15 | 122.16 (11) |
| C11—C10—H10 | 119.6 | C16—N4—H4A | 112.6 (10) |
| C12—C11—C10 | 119.42 (14) | C16—N4—H4B | 109.1 (10) |
| C12—C11—H11 | 120.3 | H4A—N4—H4B | 106.8 (14) |
| F1—C1—C2—C3 | −178.16 (12) | C8—C13—C14—O1 | −178.72 (13) |
| C6—C1—C2—C3 | 0.4 (2) | C12—C13—C14—N3 | −177.09 (12) |
| C1—C2—C3—C4 | −0.4 (2) | C8—C13—C14—N3 | 1.78 (18) |
| C2—C3—C4—C5 | −0.1 (2) | N3—C15—C16—N4 | −78.30 (15) |
| C2—C3—C4—N1 | 174.74 (12) | N2—C7—N1—C4 | −4.7 (2) |
| C3—C4—C5—C6 | 0.7 (2) | N3—C7—N1—C4 | 176.42 (11) |
| N1—C4—C5—C6 | −173.93 (12) | C3—C4—N1—C7 | 138.77 (13) |
| C2—C1—C6—C5 | 0.2 (2) | C5—C4—N1—C7 | −46.58 (19) |
| F1—C1—C6—C5 | 178.68 (12) | N1—C7—N2—C8 | −174.97 (11) |
| C4—C5—C6—C1 | −0.7 (2) | N3—C7—N2—C8 | 3.84 (19) |
| N2—C8—C9—C10 | −175.78 (14) | C9—C8—N2—C7 | 176.85 (12) |
| C13—C8—C9—C10 | 1.3 (2) | C13—C8—N2—C7 | −0.13 (19) |
| C8—C9—C10—C11 | −0.6 (3) | O1—C14—N3—C7 | −177.93 (12) |
| C9—C10—C11—C12 | −0.6 (3) | C13—C14—N3—C7 | 1.58 (17) |
| C10—C11—C12—C13 | 1.2 (3) | O1—C14—N3—C15 | 3.07 (19) |
| C11—C12—C13—C8 | −0.5 (2) | C13—C14—N3—C15 | −177.42 (11) |
| C11—C12—C13—C14 | 178.40 (13) | N2—C7—N3—C14 | −4.69 (19) |
| N2—C8—C13—C12 | 176.23 (12) | N1—C7—N3—C14 | 174.18 (11) |
| C9—C8—C13—C12 | −0.8 (2) | N2—C7—N3—C15 | 174.25 (12) |
| N2—C8—C13—C14 | −2.65 (19) | N1—C7—N3—C15 | −6.87 (17) |
| C9—C8—C13—C14 | −179.65 (12) | C16—C15—N3—C14 | −96.27 (14) |
| C12—C13—C14—O1 | 2.4 (2) | C16—C15—N3—C7 | 84.75 (15) |
| H··· | ||||
| N1—H1···N4 | 0.908 (17) | 1.925 (17) | 2.8049 (17) | 162.8 (14) |
| N4—H4A···N2i | 0.889 (16) | 2.323 (16) | 3.1321 (18) | 151.4 (13) |
| C3—H3···Cgi | 0.93 | 2.77 (1) | 3.4741 (15) | 132 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N4 | 0.908 (17) | 1.925 (17) | 2.8049 (17) | 162.8 (14) |
| N4—H4 | 0.889 (16) | 2.323 (16) | 3.1321 (18) | 151.4 (13) |
| C3—H3⋯ | 0.93 | 2.77 (1) | 3.4741 (15) | 132 (1) |
Symmetry code: (i) . Cg is the centroid of atoms N2/C7/N3/C14/C13/C8.