Literature DB >> 21582235

4-Ethoxy-imino-N'-methoxy-pyrrolidin-1-ium-3-carboximidamidium dichloride.

Qiang Guo1, Lanying Sun, Huiyuan Guo, Mingliang Liu.   

Abstract

The title compound, C(8)H(18)N(4)O(2) (2+)·2Cl(-), contains two oxime groups. The methyl oxime group has a Z configuration, and the ethyl oxime group is disordered, with both Z and E configurations in occupancies of 0.840 (8) and 0.160 (8), respectively. In the crystal structure, there are a number of N-H⋯Cl hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582235      PMCID: PMC2968450          DOI: 10.1107/S1600536809004772

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties of quinolone derivatives, see: Ball et al. (1998 ▶); Ray et al. (2005 ▶). For the synthesis of new quinolones, see: Anderson & Osheroff (2001 ▶); Choi et al. (2004 ▶); Wang, Guo et al. (2008 ▶). For some crystal structures of quinolones, see: Wang, Liu et al. (2008 ▶).

Experimental

Crystal data

C8H18N4O2 2+·2Cl− M = 273.16 Orthorhombic, a = 12.7355 (14) Å b = 8.8506 (12) Å c = 26.334 (2) Å V = 2968.3 (6) Å3 Z = 8 Mo Kα radiation μ = 0.43 mm−1 T = 298 K 0.23 × 0.20 × 0.19 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.907, T max = 0.922 14370 measured reflections 2597 independent reflections 1986 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.210 S = 1.08 2597 reflections 170 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT and SHELXTL (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809004772/pk2146sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004772/pk2146Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H18N4O22+·2ClF(000) = 1152
Mr = 273.16Dx = 1.223 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2n 2abCell parameters from 3944 reflections
a = 12.7355 (14) Åθ = 2.2–24.1°
b = 8.8506 (12) ŵ = 0.43 mm1
c = 26.334 (2) ÅT = 298 K
V = 2968.3 (6) Å3Block, colorless
Z = 80.23 × 0.20 × 0.19 mm
Bruker SMART CCD area-detector diffractometer2597 independent reflections
Radiation source: fine-focus sealed tube1986 reflections with I > 2σ(I)
graphiteRint = 0.062
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→14
Tmin = 0.907, Tmax = 0.922k = −10→10
14370 measured reflectionsl = −29→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.210H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0819P)2 + 7.7771P] where P = (Fo2 + 2Fc2)/3
2597 reflections(Δ/σ)max = 0.001
170 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.67028 (9)0.08761 (14)0.52171 (5)0.0516 (4)
Cl20.18814 (10)0.22720 (17)0.63480 (6)0.0636 (5)
N10.3711 (3)0.1103 (5)0.57222 (17)0.0528 (11)
H1A0.36400.03820.54840.063*
H1B0.30900.12200.58810.063*
N20.5131 (3)0.5960 (4)0.59228 (17)0.0543 (11)
H20.45900.61730.61050.065*
N30.6142 (3)0.4217 (5)0.55190 (18)0.0573 (12)
H3A0.65930.48970.54370.069*
H3B0.62390.32930.54290.069*
N40.559 (2)0.2442 (19)0.6611 (11)0.065 (4)0.840 (8)
N4'0.570 (12)0.212 (14)0.657 (6)0.065 (4)0.160 (8)
O10.5835 (3)0.7083 (4)0.57752 (15)0.0579 (10)
O20.5905 (4)0.1079 (6)0.6834 (2)0.0762 (17)0.840 (8)
O2'0.581 (2)0.352 (3)0.6806 (10)0.071 (8)0.160 (8)
C10.4045 (4)0.2533 (6)0.5489 (2)0.0503 (12)
H1C0.34510.30660.53430.060*
H1D0.45640.23590.52260.060*
C20.4513 (4)0.3417 (5)0.59299 (19)0.0446 (11)
H2A0.39440.39200.61150.053*
C30.4953 (4)0.2171 (5)0.62580 (18)0.0454 (11)
C40.4533 (4)0.0679 (6)0.6089 (2)0.0545 (13)
H4A0.50750.00760.59290.065*
H4B0.42400.01190.63720.065*
C50.5316 (4)0.4584 (5)0.57781 (19)0.0443 (11)
C60.6473 (6)0.7496 (7)0.6196 (3)0.0761 (18)
H6A0.60360.78520.64680.091*
H6B0.69490.82830.60960.091*
H6C0.68660.66330.63090.091*
C70.6511 (8)0.1432 (11)0.7286 (3)0.089 (3)0.840 (8)
H7A0.61040.20540.75170.106*0.840 (8)
H7B0.71490.19700.71970.106*0.840 (8)
C80.6770 (12)−0.0062 (15)0.7528 (5)0.142 (5)0.840 (8)
H8A0.6131−0.05800.76130.171*0.840 (8)
H8B0.71740.01050.78300.171*0.840 (8)
H8C0.7169−0.06650.72940.171*0.840 (8)
C7'0.648 (4)0.337 (6)0.7247 (18)0.089 (3)0.160 (8)
H7'10.69340.24880.72140.106*0.160 (8)
H7'20.60720.32740.75550.106*0.160 (8)
C8'0.713 (6)0.482 (7)0.725 (2)0.12 (2)0.160 (8)
H8'10.75920.48220.75410.148*0.160 (8)
H8'20.66730.56800.72700.148*0.160 (8)
H8'30.75450.48840.69470.148*0.160 (8)
U11U22U33U12U13U23
Cl10.0413 (7)0.0468 (7)0.0667 (8)0.0032 (5)−0.0018 (6)−0.0150 (6)
Cl20.0396 (7)0.0652 (9)0.0862 (10)−0.0009 (6)0.0023 (6)−0.0207 (8)
N10.040 (2)0.053 (3)0.065 (3)−0.010 (2)0.003 (2)−0.020 (2)
N20.049 (2)0.039 (2)0.074 (3)−0.002 (2)0.011 (2)−0.006 (2)
N30.044 (2)0.038 (2)0.090 (3)−0.0026 (19)0.018 (2)−0.007 (2)
N40.067 (7)0.060 (11)0.068 (6)−0.008 (7)−0.015 (5)0.001 (8)
N4'0.067 (7)0.060 (11)0.068 (6)−0.008 (7)−0.015 (5)0.001 (8)
O10.058 (2)0.0403 (19)0.076 (3)−0.0096 (17)0.011 (2)0.0023 (18)
O20.086 (4)0.065 (3)0.077 (3)−0.009 (3)−0.027 (3)0.008 (3)
O2'0.078 (18)0.065 (18)0.072 (17)−0.006 (14)−0.016 (14)−0.016 (15)
C10.035 (2)0.059 (3)0.057 (3)0.002 (2)−0.005 (2)−0.004 (2)
C20.036 (2)0.040 (3)0.058 (3)−0.001 (2)0.005 (2)−0.002 (2)
C30.040 (3)0.049 (3)0.047 (3)−0.009 (2)−0.004 (2)0.000 (2)
C40.049 (3)0.046 (3)0.068 (3)−0.004 (2)0.000 (3)−0.002 (3)
C50.036 (2)0.041 (3)0.056 (3)0.004 (2)−0.001 (2)−0.004 (2)
C60.070 (4)0.065 (4)0.093 (5)−0.016 (3)0.007 (4)−0.014 (3)
C70.094 (6)0.090 (6)0.082 (5)0.004 (5)−0.034 (5)0.001 (5)
C80.177 (14)0.139 (10)0.110 (9)0.045 (9)−0.059 (9)0.010 (8)
C7'0.094 (6)0.090 (6)0.082 (5)0.004 (5)−0.034 (5)0.001 (5)
C8'0.14 (5)0.13 (5)0.10 (4)0.01 (4)−0.02 (4)−0.03 (4)
N1—C11.470 (7)C2—C31.509 (7)
N1—C41.473 (7)C2—H2A0.9800
N1—H1A0.9000C3—C41.493 (7)
N1—H1B0.9000C4—H4A0.9700
N2—C51.297 (6)C4—H4B0.9700
N2—O11.393 (5)C6—H6A0.9600
N2—H20.8600C6—H6B0.9600
N3—C51.296 (6)C6—H6C0.9600
N3—H3A0.8600C7—C81.504 (14)
N3—H3B0.8600C7—H7A0.9700
N4—C31.26 (3)C7—H7B0.9700
N4—O21.40 (2)C8—H8A0.9600
N4'—C31.26 (16)C8—H8B0.9600
N4'—O2'1.39 (12)C8—H8C0.9600
O1—C61.423 (8)C7'—C8'1.53 (8)
O2—C71.454 (9)C7'—H7'10.9700
O2'—C7'1.45 (5)C7'—H7'20.9700
C1—C21.521 (7)C8'—H8'10.9600
C1—H1C0.9700C8'—H8'20.9600
C1—H1D0.9700C8'—H8'30.9600
C2—C51.507 (7)
C1—N1—C4106.7 (4)N1—C4—H4B111.2
C1—N1—H1A110.4C3—C4—H4B111.2
C4—N1—H1A110.4H4A—C4—H4B109.1
C1—N1—H1B110.4N3—C5—N2122.5 (5)
C4—N1—H1B110.4N3—C5—C2121.2 (4)
H1A—N1—H1B108.6N2—C5—C2116.3 (4)
C5—N2—O1118.1 (4)O1—C6—H6A109.5
C5—N2—H2120.9O1—C6—H6B109.5
O1—N2—H2120.9H6A—C6—H6B109.5
C5—N3—H3A120.0O1—C6—H6C109.5
C5—N3—H3B120.0H6A—C6—H6C109.5
H3A—N3—H3B120.0H6B—C6—H6C109.5
C3—N4—O2109.2 (14)O2—C7—C8105.9 (8)
C3—N4'—O2'109 (9)O2—C7—H7A110.6
N2—O1—C6109.5 (4)C8—C7—H7A110.6
N4—O2—C7108.0 (11)O2—C7—H7B110.6
N4'—O2'—C7'109 (7)C8—C7—H7B110.6
N1—C1—C2103.8 (4)H7A—C7—H7B108.7
N1—C1—H1C111.0C7—C8—H8A109.5
C2—C1—H1C111.0C7—C8—H8B109.5
N1—C1—H1D111.0H8A—C8—H8B109.5
C2—C1—H1D111.0C7—C8—H8C109.5
H1C—C1—H1D109.0H8A—C8—H8C109.5
C5—C2—C3113.7 (4)H8B—C8—H8C109.5
C5—C2—C1114.6 (4)O2'—C7'—C8'104 (4)
C3—C2—C1101.9 (4)O2'—C7'—H7'1110.9
C5—C2—H2A108.8C8'—C7'—H7'1110.9
C3—C2—H2A108.8O2'—C7'—H7'2110.9
C1—C2—H2A108.8C8'—C7'—H7'2110.9
N4—C3—C4128.4 (10)H7'1—C7'—H7'2108.9
N4'—C3—C4116 (6)C7'—C8'—H8'1109.5
N4—C3—C2121.6 (10)C7'—C8'—H8'2109.5
N4'—C3—C2133 (7)H8'1—C8'—H8'2109.5
C4—C3—C2110.0 (4)C7'—C8'—H8'3109.5
N1—C4—C3103.0 (4)H8'1—C8'—H8'3109.5
N1—C4—H4A111.2H8'2—C8'—H8'3109.5
C3—C4—H4A111.2
C5—N2—O1—C6−104.6 (6)C5—C2—C3—C4−137.4 (4)
C3—N4—O2—C7−171.4 (14)C1—C2—C3—C4−13.5 (5)
C3—N4'—O2'—C7'167 (9)C1—N1—C4—C330.2 (5)
C4—N1—C1—C2−39.6 (5)N4—C3—C4—N1171.6 (16)
N1—C1—C2—C5154.7 (4)N4'—C3—C4—N1−179 (8)
N1—C1—C2—C331.5 (5)C2—C3—C4—N1−9.5 (5)
O2—N4—C3—C41(3)O1—N2—C5—N32.4 (8)
O2—N4—C3—C2−177.3 (9)O1—N2—C5—C2−177.8 (4)
O2'—N4'—C3—N4−13 (25)C3—C2—C5—N360.0 (6)
O2'—N4'—C3—C4−163 (7)C1—C2—C5—N3−56.7 (6)
O2'—N4'—C3—C231 (17)C3—C2—C5—N2−119.7 (5)
C5—C2—C3—N441.6 (15)C1—C2—C5—N2123.6 (5)
C1—C2—C3—N4165.4 (14)N4—O2—C7—C8176.7 (14)
C5—C2—C3—N4'29 (9)N4'—O2'—C7'—C8'143 (8)
C1—C2—C3—N4'153 (9)
D—H···AD—HH···AD···AD—H···A
N3—H3B···Cl10.862.293.144 (4)173
N3—H3A···Cl1i0.862.413.213 (4)156
N2—H2···Cl2ii0.862.213.029 (4)160
N1—H1B···Cl20.902.183.035 (4)159
N1—H1A···Cl1iii0.902.203.076 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯Cl10.862.293.144 (4)173
N3—H3A⋯Cl1i0.862.413.213 (4)156
N2—H2⋯Cl2ii0.862.213.029 (4)160
N1—H1B⋯Cl20.902.183.035 (4)159
N1—H1A⋯Cl1iii0.902.203.076 (4)165

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Therapeutic advances of new fluoroquinolones.

Authors:  P Ball; A Fernald; G Tillotson
Journal:  Expert Opin Investig Drugs       Date:  1998-05       Impact factor: 6.206

Review 3.  Type II topoisomerases as targets for quinolone antibacterials: turning Dr. Jekyll into Mr. Hyde.

Authors:  V E Anderson; N Osheroff
Journal:  Curr Pharm Des       Date:  2001-03       Impact factor: 3.116

4.  [Synthesis and antibacterial activity of 7-(3-amino-4-alkoxyimino-1 -piperidyl) -quinolones].

Authors:  Xiu-Yun Wang; Qiang Guo; Yu-Cheng Wang; Bing-Quan Liu; Ming-Liang Liu; Lan-Ying Sun; Hui-Yuan Guo
Journal:  Yao Xue Xue Bao       Date:  2008-08

5.  Syntheses and biological evaluation of new fluoroquinolone antibacterials containing chiral oxiimino pyrrolidine.

Authors:  Dong Rack Choi; Jung Han Shin; Jin Yang; Sue Hye Yoon; Yong Ho Jung
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

6.  tert-Butyl 4-carbamoyl-3-methoxy-imino-4-methyl-piperidine-1-carboxyl-ate.

Authors:  Juxian Wang; Mingliang Liu; Jue Cao; Yucheng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  6 in total

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