| Literature DB >> 21582158 |
Georgia Efthimiopoulos1, Hugh W Thompson, Roger A Lalancette.
Abstract
The title ketocarboxylic acid, C(5)H(6)O(3), is the smallest carboxy-cyclanone to have its crystal structure determined. It adopts a chiral conformation, by rotation of its carboxyl O atoms away from the plane of skeletal symmetry that passes through the carboxyl carbon and both atoms of the ketone carbonyl. The four-membered ring is non-planar, with a shallow fold of 14.3 (1)° along a line connecting the two α-carbons of the ketone group. In the crystal, the molecules are linked by centrosymmetric hydrogen-bond pairing of ordered carboxylic acid groups [O⋯O = 2.6392 (12) Å and O-H⋯O = 175.74 (15)°], yielding two different sets of dimers, related by by a 2(1) screw axis in c, in the cell. A C-H⋯O interaction is also present.Entities:
Year: 2009 PMID: 21582158 PMCID: PMC2968635 DOI: 10.1107/S1600536809003961
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6O3 | |
| Monoclinic, | Melting point: 342 K |
| Hall symbol: -P 2ybc | Cu |
| Cell parameters from 3724 reflections | |
| θ = 4.0–66.7° | |
| µ = 1.03 mm−1 | |
| β = 106.899 (4)° | |
| Parallelepiped, colourless | |
| 0.48 × 0.20 × 0.15 mm |
| Bruker SMART CCD APEXII area-detector diffractometer | 906 independent reflections |
| Radiation source: fine-focus sealed tube | 891 reflections with |
| graphite | |
| φ and ω scans | θmax = 66.7°, θmin = 5.2° |
| Absorption correction: numerical ( | |
| 3854 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 906 reflections | Δρmax = 0.25 e Å−3 |
| 77 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0140 (13) |
| Experimental. crystal mounted on a Cryoloop using Paratone-N |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.11919 (10) | 0.09994 (19) | 0.84099 (8) | 0.0276 (3) | |
| C1 | 0.20439 (13) | 0.4459 (2) | 0.63057 (10) | 0.0164 (3) | |
| H1 | 0.1194 | 0.5695 | 0.5949 | 0.020* | |
| O2 | 0.42464 (10) | 0.29447 (16) | 0.57144 (8) | 0.0226 (3) | |
| C2 | 0.13692 (14) | 0.1810 (2) | 0.63346 (11) | 0.0190 (3) | |
| H2A | 0.0251 | 0.1641 | 0.5863 | 0.023* | |
| H2B | 0.2016 | 0.0472 | 0.6132 | 0.023* | |
| O3 | 0.35444 (10) | 0.69510 (15) | 0.53889 (8) | 0.0197 (3) | |
| H3 | 0.4319 (19) | 0.696 (3) | 0.5052 (14) | 0.030* | |
| C3 | 0.16234 (13) | 0.2142 (2) | 0.76737 (11) | 0.0187 (3) | |
| C4 | 0.25515 (14) | 0.4542 (2) | 0.77165 (11) | 0.0204 (3) | |
| H4A | 0.3698 | 0.4359 | 0.8096 | 0.024* | |
| H4B | 0.2126 | 0.5984 | 0.8053 | 0.024* | |
| C5 | 0.33761 (13) | 0.4681 (2) | 0.57643 (10) | 0.0158 (3) |
| O1 | 0.0220 (5) | 0.0380 (6) | 0.0232 (5) | −0.0043 (4) | 0.0075 (4) | 0.0098 (4) |
| C1 | 0.0165 (6) | 0.0169 (6) | 0.0165 (6) | 0.0006 (4) | 0.0056 (4) | 0.0008 (5) |
| O2 | 0.0221 (5) | 0.0194 (5) | 0.0304 (5) | 0.0050 (4) | 0.0140 (4) | 0.0079 (4) |
| C2 | 0.0194 (6) | 0.0187 (7) | 0.0206 (6) | −0.0032 (5) | 0.0085 (5) | −0.0026 (5) |
| O3 | 0.0222 (5) | 0.0155 (5) | 0.0254 (5) | 0.0003 (3) | 0.0132 (4) | 0.0021 (3) |
| C3 | 0.0135 (6) | 0.0229 (7) | 0.0198 (6) | 0.0018 (5) | 0.0049 (4) | 0.0033 (5) |
| C4 | 0.0208 (6) | 0.0253 (7) | 0.0162 (6) | −0.0041 (5) | 0.0071 (5) | −0.0035 (5) |
| C5 | 0.0165 (6) | 0.0168 (6) | 0.0132 (5) | −0.0004 (5) | 0.0028 (4) | 0.0006 (4) |
| O1—C3 | 1.2024 (15) | C2—H2A | 0.9900 |
| C1—C5 | 1.4983 (16) | C2—H2B | 0.9900 |
| C1—C2 | 1.5458 (17) | O3—C5 | 1.3164 (15) |
| C1—C4 | 1.5701 (16) | O3—H3 | 0.885 (18) |
| C1—H1 | 1.0000 | C3—C4 | 1.5217 (17) |
| O2—C5 | 1.2225 (15) | C4—H4A | 0.9900 |
| C2—C3 | 1.5171 (17) | C4—H4B | 0.9900 |
| C5—C1—C2 | 116.17 (10) | O1—C3—C2 | 133.43 (12) |
| C5—C1—C4 | 114.48 (9) | O1—C3—C4 | 133.61 (12) |
| C2—C1—C4 | 89.94 (9) | C2—C3—C4 | 92.88 (9) |
| C5—C1—H1 | 111.5 | C3—C4—C1 | 87.33 (9) |
| C2—C1—H1 | 111.5 | C3—C4—H4A | 114.1 |
| C4—C1—H1 | 111.5 | C1—C4—H4A | 114.1 |
| C3—C2—C1 | 88.37 (9) | C3—C4—H4B | 114.1 |
| C3—C2—H2A | 113.9 | C1—C4—H4B | 114.1 |
| C1—C2—H2A | 113.9 | H4A—C4—H4B | 111.3 |
| C3—C2—H2B | 113.9 | O2—C5—O3 | 123.66 (11) |
| C1—C2—H2B | 113.9 | O2—C5—C1 | 123.18 (11) |
| H2A—C2—H2B | 111.1 | O3—C5—C1 | 113.12 (10) |
| C5—O3—H3 | 109.3 (10) | ||
| C5—C1—C2—C3 | 126.54 (10) | C5—C1—C4—C3 | −128.00 (10) |
| C4—C1—C2—C3 | 9.07 (8) | C2—C1—C4—C3 | −9.05 (8) |
| C1—C2—C3—O1 | 167.67 (14) | C2—C1—C5—O2 | −24.15 (16) |
| C1—C2—C3—C4 | −9.38 (9) | C4—C1—C5—O2 | 78.70 (14) |
| O1—C3—C4—C1 | −167.80 (14) | C2—C1—C5—O3 | 158.11 (10) |
| C2—C3—C4—C1 | 9.24 (9) | C4—C1—C5—O3 | −99.04 (12) |
| H··· | ||||
| O3—H3···O2i | 0.885 (18) | 1.756 (18) | 2.6392 (12) | 175.74 (15) |
| C1—H1···O1ii | 1.00 | 2.45 | 3.1003 (15) | 122 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2i | 0.885 (18) | 1.756 (18) | 2.6392 (12) | 175.74 (15) |
| C1—H1⋯O1ii | 1.00 | 2.45 | 3.1003 (15) | 122 |
Symmetry codes: (i) ; (ii) .