| Literature DB >> 21582157 |
Yousef M Hijji, Belygona Barare, Ray J Butcher, Jerry P Jasinski.
Abstract
In the title mol-ecule, C(13)H(10)N(2)O(4), the dihedral angle between the mean planes of the benzene and phenolate rings is 21.6 (4)°. The nitro O atoms are twisted slightly out of the plane of the ring to which the nitro group is attached [dihedral angle 8.4 (3)°]. The amine group forms an intra-molecular hydrogen bond with both nearby O atoms. An extended π delocalization throughout the entire mol-ecule exists producing a zwitterionic effect in this region of the mol-ecule. The shortened C-O bond [1.2997 (15) Å] in concert with the slightly longer C-OH bond [1.3310 (16) Å] provide evidence for this effect. The crystal packing is influenced by strong inter-molecular O-H⋯O hydrogen bonding. As a result, mol-ecules are linked into an infinite zigzag chain running along the b axis. A MOPAC PM3 calculation provides support to these observations.Entities:
Year: 2009 PMID: 21582157 PMCID: PMC2968543 DOI: 10.1107/S1600536809001007
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5321 reflections |
| θ = 4.6–32.6° | |
| µ = 0.11 mm−1 | |
| β = 96.387 (4)° | Prism, yellow |
| 0.45 × 0.36 × 0.21 mm | |
| Oxford Diffraction Gemini R diffractometer | 3889 independent reflections |
| Radiation source: fine-focus sealed tube | 2071 reflections with |
| graphite | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 32.5°, θmin = 4.6° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 16362 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3889 reflections | (Δ/σ)max < 0.001 |
| 173 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.07674 (16) | 0.78106 (11) | 0.74658 (6) | 0.0506 (3) | |
| H1O | 0.0213 | 0.8253 | 0.7779 | 0.061* | |
| O2 | 0.56661 (19) | 1.27359 (14) | 0.63179 (8) | 0.0696 (4) | |
| O3 | 0.64896 (19) | 1.09097 (16) | 0.56567 (8) | 0.0797 (5) | |
| O4 | 0.10989 (15) | 0.42056 (11) | 0.66269 (5) | 0.0475 (3) | |
| N1 | 0.56076 (17) | 1.14379 (16) | 0.61491 (7) | 0.0494 (3) | |
| N2 | 0.25299 (15) | 0.67241 (13) | 0.63378 (6) | 0.0367 (3) | |
| H2B | 0.2098 | 0.6146 | 0.6665 | 0.044* | |
| C7 | 0.27637 (17) | 0.61689 (15) | 0.56560 (7) | 0.0353 (3) | |
| H7A | 0.3301 | 0.6755 | 0.5304 | 0.042* | |
| C1 | 0.19513 (18) | 0.87143 (15) | 0.71860 (7) | 0.0372 (3) | |
| C2 | 0.2271 (2) | 1.01473 (16) | 0.74472 (8) | 0.0433 (4) | |
| H2A | 0.1653 | 1.0508 | 0.7847 | 0.052* | |
| C3 | 0.3485 (2) | 1.10366 (16) | 0.71228 (8) | 0.0430 (4) | |
| H3A | 0.3688 | 1.1995 | 0.7297 | 0.052* | |
| C4 | 0.44018 (19) | 1.04784 (16) | 0.65308 (8) | 0.0383 (3) | |
| C5 | 0.41405 (19) | 0.90591 (15) | 0.62591 (8) | 0.0382 (3) | |
| H5A | 0.4778 | 0.8706 | 0.5863 | 0.046* | |
| C6 | 0.29168 (18) | 0.81772 (15) | 0.65867 (7) | 0.0346 (3) | |
| C8 | 0.22475 (18) | 0.47420 (15) | 0.54298 (7) | 0.0330 (3) | |
| C9 | 0.13664 (18) | 0.37863 (15) | 0.59295 (7) | 0.0357 (3) | |
| C10 | 0.0795 (2) | 0.23976 (16) | 0.56283 (8) | 0.0430 (4) | |
| H10A | 0.0199 | 0.1758 | 0.5934 | 0.052* | |
| C11 | 0.1105 (2) | 0.19794 (16) | 0.48953 (9) | 0.0464 (4) | |
| H11A | 0.0724 | 0.1056 | 0.4714 | 0.056* | |
| C12 | 0.1984 (2) | 0.29107 (17) | 0.44103 (8) | 0.0443 (4) | |
| H12A | 0.2196 | 0.2601 | 0.3915 | 0.053* | |
| C13 | 0.25243 (19) | 0.42681 (15) | 0.46681 (8) | 0.0380 (3) | |
| H13A | 0.3082 | 0.4895 | 0.4342 | 0.046* |
| O1 | 0.0648 (7) | 0.0424 (6) | 0.0510 (6) | −0.0085 (5) | 0.0346 (5) | −0.0106 (5) |
| O2 | 0.0823 (9) | 0.0445 (8) | 0.0842 (9) | −0.0225 (7) | 0.0183 (7) | −0.0007 (6) |
| O3 | 0.0888 (10) | 0.0751 (10) | 0.0847 (9) | −0.0308 (8) | 0.0520 (8) | −0.0116 (7) |
| O4 | 0.0642 (7) | 0.0413 (6) | 0.0418 (5) | −0.0029 (5) | 0.0272 (5) | 0.0021 (4) |
| N1 | 0.0507 (8) | 0.0468 (8) | 0.0520 (7) | −0.0143 (6) | 0.0115 (6) | 0.0001 (6) |
| N2 | 0.0446 (6) | 0.0301 (6) | 0.0385 (6) | −0.0019 (5) | 0.0180 (5) | −0.0009 (5) |
| C7 | 0.0367 (7) | 0.0335 (7) | 0.0383 (7) | −0.0011 (6) | 0.0153 (5) | 0.0007 (5) |
| C1 | 0.0465 (8) | 0.0325 (7) | 0.0348 (6) | −0.0015 (6) | 0.0140 (6) | 0.0004 (5) |
| C2 | 0.0530 (9) | 0.0387 (8) | 0.0407 (7) | 0.0013 (7) | 0.0159 (6) | −0.0064 (6) |
| C3 | 0.0518 (9) | 0.0337 (8) | 0.0439 (7) | −0.0056 (6) | 0.0068 (6) | −0.0033 (6) |
| C4 | 0.0412 (7) | 0.0361 (8) | 0.0383 (7) | −0.0059 (6) | 0.0075 (6) | 0.0018 (6) |
| C5 | 0.0422 (8) | 0.0354 (8) | 0.0390 (7) | −0.0021 (6) | 0.0138 (6) | −0.0021 (6) |
| C6 | 0.0407 (7) | 0.0298 (7) | 0.0346 (6) | 0.0003 (6) | 0.0091 (5) | −0.0021 (5) |
| C8 | 0.0347 (6) | 0.0303 (7) | 0.0360 (6) | 0.0010 (5) | 0.0133 (5) | 0.0007 (5) |
| C9 | 0.0378 (7) | 0.0324 (7) | 0.0390 (7) | 0.0034 (6) | 0.0138 (5) | 0.0035 (5) |
| C10 | 0.0466 (8) | 0.0327 (8) | 0.0509 (8) | −0.0040 (6) | 0.0109 (6) | 0.0070 (6) |
| C11 | 0.0552 (9) | 0.0316 (8) | 0.0522 (8) | −0.0028 (7) | 0.0050 (7) | −0.0038 (6) |
| C12 | 0.0551 (9) | 0.0401 (9) | 0.0390 (7) | 0.0018 (7) | 0.0113 (6) | −0.0043 (6) |
| C13 | 0.0434 (7) | 0.0347 (8) | 0.0382 (7) | 0.0007 (6) | 0.0156 (6) | 0.0002 (5) |
| O1—C1 | 1.3310 (16) | C3—C4 | 1.3847 (19) |
| O1—H1O | 0.8200 | C3—H3A | 0.9300 |
| O2—N1 | 1.2170 (18) | C4—C5 | 1.3813 (19) |
| O3—N1 | 1.2262 (16) | C5—C6 | 1.3776 (19) |
| O4—C9 | 1.2997 (15) | C5—H5A | 0.9300 |
| N1—C4 | 1.4574 (18) | C8—C13 | 1.4210 (17) |
| N2—C7 | 1.3105 (16) | C8—C9 | 1.4325 (18) |
| N2—C6 | 1.4107 (17) | C9—C10 | 1.414 (2) |
| N2—H2B | 0.8600 | C10—C11 | 1.366 (2) |
| C7—C8 | 1.3977 (19) | C10—H10A | 0.9300 |
| C7—H7A | 0.9300 | C11—C12 | 1.402 (2) |
| C1—C2 | 1.392 (2) | C11—H11A | 0.9300 |
| C1—C6 | 1.4089 (18) | C12—C13 | 1.359 (2) |
| C2—C3 | 1.374 (2) | C12—H12A | 0.9300 |
| C2—H2A | 0.9300 | C13—H13A | 0.9300 |
| C1—O1—H1O | 109.5 | C6—C5—H5A | 120.7 |
| O2—N1—O3 | 122.66 (14) | C4—C5—H5A | 120.7 |
| O2—N1—C4 | 118.75 (13) | C5—C6—C1 | 120.61 (12) |
| O3—N1—C4 | 118.56 (14) | C5—C6—N2 | 122.80 (12) |
| C7—N2—C6 | 126.38 (12) | C1—C6—N2 | 116.58 (12) |
| C7—N2—H2B | 116.8 | C7—C8—C13 | 118.57 (12) |
| C6—N2—H2B | 116.8 | C7—C8—C9 | 121.65 (11) |
| N2—C7—C8 | 123.41 (12) | C13—C8—C9 | 119.70 (12) |
| N2—C7—H7A | 118.3 | O4—C9—C10 | 122.26 (12) |
| C8—C7—H7A | 118.3 | O4—C9—C8 | 120.42 (12) |
| O1—C1—C2 | 123.82 (12) | C10—C9—C8 | 117.32 (12) |
| O1—C1—C6 | 117.37 (12) | C11—C10—C9 | 121.09 (13) |
| C2—C1—C6 | 118.80 (12) | C11—C10—H10A | 119.5 |
| C3—C2—C1 | 121.01 (13) | C9—C10—H10A | 119.5 |
| C3—C2—H2A | 119.5 | C10—C11—C12 | 121.48 (14) |
| C1—C2—H2A | 119.5 | C10—C11—H11A | 119.3 |
| C2—C3—C4 | 118.72 (14) | C12—C11—H11A | 119.3 |
| C2—C3—H3A | 120.6 | C13—C12—C11 | 119.57 (13) |
| C4—C3—H3A | 120.6 | C13—C12—H12A | 120.2 |
| C5—C4—C3 | 122.21 (13) | C11—C12—H12A | 120.2 |
| C5—C4—N1 | 118.47 (13) | C12—C13—C8 | 120.82 (13) |
| C3—C4—N1 | 119.23 (13) | C12—C13—H13A | 119.6 |
| C6—C5—C4 | 118.64 (12) | C8—C13—H13A | 119.6 |
| C6—N2—C7—C8 | −175.95 (12) | C2—C1—C6—N2 | −179.38 (12) |
| O1—C1—C2—C3 | −178.63 (14) | C7—N2—C6—C5 | −22.8 (2) |
| C6—C1—C2—C3 | 0.9 (2) | C7—N2—C6—C1 | 155.85 (13) |
| C1—C2—C3—C4 | −0.4 (2) | N2—C7—C8—C13 | 178.40 (13) |
| C2—C3—C4—C5 | −0.3 (2) | N2—C7—C8—C9 | 1.8 (2) |
| C2—C3—C4—N1 | 176.22 (13) | C7—C8—C9—O4 | −3.2 (2) |
| O2—N1—C4—C5 | 170.80 (13) | C13—C8—C9—O4 | −179.81 (12) |
| O3—N1—C4—C5 | −7.5 (2) | C7—C8—C9—C10 | 176.10 (12) |
| O2—N1—C4—C3 | −5.8 (2) | C13—C8—C9—C10 | −0.49 (19) |
| O3—N1—C4—C3 | 175.92 (14) | O4—C9—C10—C11 | −179.51 (13) |
| C3—C4—C5—C6 | 0.4 (2) | C8—C9—C10—C11 | 1.2 (2) |
| N1—C4—C5—C6 | −176.08 (12) | C9—C10—C11—C12 | −0.6 (2) |
| C4—C5—C6—C1 | 0.1 (2) | C10—C11—C12—C13 | −0.8 (2) |
| C4—C5—C6—N2 | 178.66 (12) | C11—C12—C13—C8 | 1.5 (2) |
| O1—C1—C6—C5 | 178.83 (12) | C7—C8—C13—C12 | −177.54 (13) |
| C2—C1—C6—C5 | −0.7 (2) | C9—C8—C13—C12 | −0.8 (2) |
| O1—C1—C6—N2 | 0.15 (19) |
| H··· | ||||
| O1—H1O···O4i | 0.82 | 1.72 | 2.5407 (13) | 175 |
| N2—H2B···O4 | 0.86 | 1.91 | 2.5973 (15) | 135 |
| N2—H2B···O1 | 0.86 | 2.34 | 2.6532 (14) | 102 |
| C2—H2A···O4i | 0.93 | 2.60 | 3.2233 (18) | 125 |
| C13—H13A···O2ii | 0.93 | 2.65 | 3.5555 (19) | 163 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 | 1.72 | 2.5407 (13) | 175 |
| N2—H2 | 0.86 | 1.91 | 2.5973 (15) | 135 |
| N2—H2 | 0.86 | 2.34 | 2.6532 (14) | 102 |
| C2—H2 | 0.93 | 2.60 | 3.2233 (18) | 125 |
| C13—H13 | 0.93 | 2.65 | 3.5555 (19) | 163 |
Symmetry codes: (i) ; (ii) .