Literature DB >> 21582157

(E)-2-[(2-Hydr-oxy-5-nitro-phen-yl)iminiometh-yl]phenolate.

Yousef M Hijji, Belygona Barare, Ray J Butcher, Jerry P Jasinski.   

Abstract

In the title mol-ecule, C(13)H(10)N(2)O(4), the dihedral angle between the mean planes of the benzene and phenolate rings is 21.6 (4)°. The nitro O atoms are twisted slightly out of the plane of the ring to which the nitro group is attached [dihedral angle 8.4 (3)°]. The amine group forms an intra-molecular hydrogen bond with both nearby O atoms. An extended π delocalization throughout the entire mol-ecule exists producing a zwitterionic effect in this region of the mol-ecule. The shortened C-O bond [1.2997 (15) Å] in concert with the slightly longer C-OH bond [1.3310 (16) Å] provide evidence for this effect. The crystal packing is influenced by strong inter-molecular O-H⋯O hydrogen bonding. As a result, mol-ecules are linked into an infinite zigzag chain running along the b axis. A MOPAC PM3 calculation provides support to these observations.

Entities:  

Year:  2009        PMID: 21582157      PMCID: PMC2968543          DOI: 10.1107/S1600536809001007

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ersanlı et al. (2003 ▶); Odabaşoğlu et al. (2006 ▶); Jasinski et al. (2007 ▶); Elerman et al. (1995 ▶); Hijji et al. (2008 ▶, 2009 ▶). For the application of Schiff bases in organic synthesis, see: Barba et al. (2001 ▶); Rodriguez et al. (2005 ▶). For details of the MOPAC PM3 calculation, see: Schmidt & Polik (2007 ▶).

Experimental

Crystal data

C13H10N2O4 M = 258.23 Monoclinic, a = 7.3949 (3) Å b = 9.1058 (4) Å c = 17.2734 (6) Å β = 96.387 (4)° V = 1155.91 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 (2) K 0.45 × 0.36 × 0.21 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.950, T max = 0.977 16362 measured reflections 3889 independent reflections 2071 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.161 S = 1.01 3889 reflections 173 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlisRed (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001007/bt2849sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001007/bt2849Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10N2O4F(000) = 536
Mr = 258.23Dx = 1.484 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5321 reflections
a = 7.3949 (3) Åθ = 4.6–32.6°
b = 9.1058 (4) ŵ = 0.11 mm1
c = 17.2734 (6) ÅT = 296 K
β = 96.387 (4)°Prism, yellow
V = 1155.91 (8) Å30.45 × 0.36 × 0.21 mm
Z = 4
Oxford Diffraction Gemini R diffractometer3889 independent reflections
Radiation source: fine-focus sealed tube2071 reflections with I > 2σ(I)
graphiteRint = 0.045
Detector resolution: 10.5081 pixels mm-1θmax = 32.5°, θmin = 4.6°
φ and ω scansh = −10→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −12→13
Tmin = 0.950, Tmax = 0.977l = −25→24
16362 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0893P)2] where P = (Fo2 + 2Fc2)/3
3889 reflections(Δ/σ)max < 0.001
173 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.07674 (16)0.78106 (11)0.74658 (6)0.0506 (3)
H1O0.02130.82530.77790.061*
O20.56661 (19)1.27359 (14)0.63179 (8)0.0696 (4)
O30.64896 (19)1.09097 (16)0.56567 (8)0.0797 (5)
O40.10989 (15)0.42056 (11)0.66269 (5)0.0475 (3)
N10.56076 (17)1.14379 (16)0.61491 (7)0.0494 (3)
N20.25299 (15)0.67241 (13)0.63378 (6)0.0367 (3)
H2B0.20980.61460.66650.044*
C70.27637 (17)0.61689 (15)0.56560 (7)0.0353 (3)
H7A0.33010.67550.53040.042*
C10.19513 (18)0.87143 (15)0.71860 (7)0.0372 (3)
C20.2271 (2)1.01473 (16)0.74472 (8)0.0433 (4)
H2A0.16531.05080.78470.052*
C30.3485 (2)1.10366 (16)0.71228 (8)0.0430 (4)
H3A0.36881.19950.72970.052*
C40.44018 (19)1.04784 (16)0.65308 (8)0.0383 (3)
C50.41405 (19)0.90591 (15)0.62591 (8)0.0382 (3)
H5A0.47780.87060.58630.046*
C60.29168 (18)0.81772 (15)0.65867 (7)0.0346 (3)
C80.22475 (18)0.47420 (15)0.54298 (7)0.0330 (3)
C90.13664 (18)0.37863 (15)0.59295 (7)0.0357 (3)
C100.0795 (2)0.23976 (16)0.56283 (8)0.0430 (4)
H10A0.01990.17580.59340.052*
C110.1105 (2)0.19794 (16)0.48953 (9)0.0464 (4)
H11A0.07240.10560.47140.056*
C120.1984 (2)0.29107 (17)0.44103 (8)0.0443 (4)
H12A0.21960.26010.39150.053*
C130.25243 (19)0.42681 (15)0.46681 (8)0.0380 (3)
H13A0.30820.48950.43420.046*
U11U22U33U12U13U23
O10.0648 (7)0.0424 (6)0.0510 (6)−0.0085 (5)0.0346 (5)−0.0106 (5)
O20.0823 (9)0.0445 (8)0.0842 (9)−0.0225 (7)0.0183 (7)−0.0007 (6)
O30.0888 (10)0.0751 (10)0.0847 (9)−0.0308 (8)0.0520 (8)−0.0116 (7)
O40.0642 (7)0.0413 (6)0.0418 (5)−0.0029 (5)0.0272 (5)0.0021 (4)
N10.0507 (8)0.0468 (8)0.0520 (7)−0.0143 (6)0.0115 (6)0.0001 (6)
N20.0446 (6)0.0301 (6)0.0385 (6)−0.0019 (5)0.0180 (5)−0.0009 (5)
C70.0367 (7)0.0335 (7)0.0383 (7)−0.0011 (6)0.0153 (5)0.0007 (5)
C10.0465 (8)0.0325 (7)0.0348 (6)−0.0015 (6)0.0140 (6)0.0004 (5)
C20.0530 (9)0.0387 (8)0.0407 (7)0.0013 (7)0.0159 (6)−0.0064 (6)
C30.0518 (9)0.0337 (8)0.0439 (7)−0.0056 (6)0.0068 (6)−0.0033 (6)
C40.0412 (7)0.0361 (8)0.0383 (7)−0.0059 (6)0.0075 (6)0.0018 (6)
C50.0422 (8)0.0354 (8)0.0390 (7)−0.0021 (6)0.0138 (6)−0.0021 (6)
C60.0407 (7)0.0298 (7)0.0346 (6)0.0003 (6)0.0091 (5)−0.0021 (5)
C80.0347 (6)0.0303 (7)0.0360 (6)0.0010 (5)0.0133 (5)0.0007 (5)
C90.0378 (7)0.0324 (7)0.0390 (7)0.0034 (6)0.0138 (5)0.0035 (5)
C100.0466 (8)0.0327 (8)0.0509 (8)−0.0040 (6)0.0109 (6)0.0070 (6)
C110.0552 (9)0.0316 (8)0.0522 (8)−0.0028 (7)0.0050 (7)−0.0038 (6)
C120.0551 (9)0.0401 (9)0.0390 (7)0.0018 (7)0.0113 (6)−0.0043 (6)
C130.0434 (7)0.0347 (8)0.0382 (7)0.0007 (6)0.0156 (6)0.0002 (5)
O1—C11.3310 (16)C3—C41.3847 (19)
O1—H1O0.8200C3—H3A0.9300
O2—N11.2170 (18)C4—C51.3813 (19)
O3—N11.2262 (16)C5—C61.3776 (19)
O4—C91.2997 (15)C5—H5A0.9300
N1—C41.4574 (18)C8—C131.4210 (17)
N2—C71.3105 (16)C8—C91.4325 (18)
N2—C61.4107 (17)C9—C101.414 (2)
N2—H2B0.8600C10—C111.366 (2)
C7—C81.3977 (19)C10—H10A0.9300
C7—H7A0.9300C11—C121.402 (2)
C1—C21.392 (2)C11—H11A0.9300
C1—C61.4089 (18)C12—C131.359 (2)
C2—C31.374 (2)C12—H12A0.9300
C2—H2A0.9300C13—H13A0.9300
C1—O1—H1O109.5C6—C5—H5A120.7
O2—N1—O3122.66 (14)C4—C5—H5A120.7
O2—N1—C4118.75 (13)C5—C6—C1120.61 (12)
O3—N1—C4118.56 (14)C5—C6—N2122.80 (12)
C7—N2—C6126.38 (12)C1—C6—N2116.58 (12)
C7—N2—H2B116.8C7—C8—C13118.57 (12)
C6—N2—H2B116.8C7—C8—C9121.65 (11)
N2—C7—C8123.41 (12)C13—C8—C9119.70 (12)
N2—C7—H7A118.3O4—C9—C10122.26 (12)
C8—C7—H7A118.3O4—C9—C8120.42 (12)
O1—C1—C2123.82 (12)C10—C9—C8117.32 (12)
O1—C1—C6117.37 (12)C11—C10—C9121.09 (13)
C2—C1—C6118.80 (12)C11—C10—H10A119.5
C3—C2—C1121.01 (13)C9—C10—H10A119.5
C3—C2—H2A119.5C10—C11—C12121.48 (14)
C1—C2—H2A119.5C10—C11—H11A119.3
C2—C3—C4118.72 (14)C12—C11—H11A119.3
C2—C3—H3A120.6C13—C12—C11119.57 (13)
C4—C3—H3A120.6C13—C12—H12A120.2
C5—C4—C3122.21 (13)C11—C12—H12A120.2
C5—C4—N1118.47 (13)C12—C13—C8120.82 (13)
C3—C4—N1119.23 (13)C12—C13—H13A119.6
C6—C5—C4118.64 (12)C8—C13—H13A119.6
C6—N2—C7—C8−175.95 (12)C2—C1—C6—N2−179.38 (12)
O1—C1—C2—C3−178.63 (14)C7—N2—C6—C5−22.8 (2)
C6—C1—C2—C30.9 (2)C7—N2—C6—C1155.85 (13)
C1—C2—C3—C4−0.4 (2)N2—C7—C8—C13178.40 (13)
C2—C3—C4—C5−0.3 (2)N2—C7—C8—C91.8 (2)
C2—C3—C4—N1176.22 (13)C7—C8—C9—O4−3.2 (2)
O2—N1—C4—C5170.80 (13)C13—C8—C9—O4−179.81 (12)
O3—N1—C4—C5−7.5 (2)C7—C8—C9—C10176.10 (12)
O2—N1—C4—C3−5.8 (2)C13—C8—C9—C10−0.49 (19)
O3—N1—C4—C3175.92 (14)O4—C9—C10—C11−179.51 (13)
C3—C4—C5—C60.4 (2)C8—C9—C10—C111.2 (2)
N1—C4—C5—C6−176.08 (12)C9—C10—C11—C12−0.6 (2)
C4—C5—C6—C10.1 (2)C10—C11—C12—C13−0.8 (2)
C4—C5—C6—N2178.66 (12)C11—C12—C13—C81.5 (2)
O1—C1—C6—C5178.83 (12)C7—C8—C13—C12−177.54 (13)
C2—C1—C6—C5−0.7 (2)C9—C8—C13—C12−0.8 (2)
O1—C1—C6—N20.15 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O4i0.821.722.5407 (13)175
N2—H2B···O40.861.912.5973 (15)135
N2—H2B···O10.862.342.6532 (14)102
C2—H2A···O4i0.932.603.2233 (18)125
C13—H13A···O2ii0.932.653.5555 (19)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O4i0.821.722.5407 (13)175
N2—H2B⋯O40.861.912.5973 (15)135
N2—H2B⋯O10.862.342.6532 (14)102
C2—H2A⋯O4i0.932.603.2233 (18)125
C13—H13A⋯O2ii0.932.653.5555 (19)163

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(2-hydroxy-4-nitrophenyl)aminomethylene]cyclohexa-3,5-dien-1(2H)-one.

Authors:  Cem Cüneyt Ersanli; Cigdem Albayrak; Mustafa Odabaşoglu; Ahmet Erdönmez
Journal:  Acta Crystallogr C       Date:  2003-09-23       Impact factor: 1.172

3.  (E)-2-[(2-Hydr-oxy-5-nitro-phen-yl)iminiometh-yl]-4-nitro-phenolate.

Authors:  Yousef M Hijji; Belygona Barare; Ray J Butcher; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14
  3 in total

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