Literature DB >> 21582077

catena-Poly[[di-μ-aqua-bis[aqua-cobalt(II)]]-bis(μ(3)-1H-benzimidazole-5,6-dicarboxylato].

Kai Xu, Li-Ping Yu.   

Abstract

The title compound, [Co(2)(C(9)H(4)N(2)O(4))(2)(H(2)O)(4)](n), is a one-dimensional polymeric complex with bridging 1H-benzimidazole-5,6-dicarboxyl-ate and aqua ligands. The Co(II) cation has an octa-hedral coordination environment provided by an NO(5) donor set. Adjacent polymeric chains extended along the [100] direction are linked by O-H⋯O and N-H⋯O hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582077      PMCID: PMC2968675          DOI: 10.1107/S1600536809005194

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

A dinuclear CoII complex with a 1H-benzimidazole-5,6-dicarboxyl­ate anion as a bridging ligand was reported by Lo et al. (2007 ▶). For general information on polymeric coordination compounds, see: Barnett & Champness (2003 ▶); Eddaoudi et al. (2001 ▶); Kitagawa et al. (2004 ▶); Moulton & Zaworotko (2001 ▶); Roesky & Andruh (2003 ▶).

Experimental

Crystal data

[Co2(C9H4N2O4)2(H2O)4] M = 598.20 Monoclinic, a = 8.8161 (8) Å b = 9.1092 (6) Å c = 13.0236 (13) Å β = 97.693 (7)° V = 1036.48 (16) Å3 Z = 2 Mo Kα radiation μ = 1.68 mm−1 T = 298 K 0.13 × 0.10 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.801, T max = 0.936 10641 measured reflections 2132 independent reflections 1843 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.084 S = 1.09 2132 reflections 178 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2004bbr id="bb12">); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809005194/gk2188sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005194/gk2188Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co2(C9H4N2O4)2(H2O)4]F(000) = 604
Mr = 598.20Dx = 1.917 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3722 reflections
a = 8.8161 (8) Åθ = 2.8–26.9°
b = 9.1092 (6) ŵ = 1.68 mm1
c = 13.0236 (13) ÅT = 298 K
β = 97.693 (7)°Plate, pink
V = 1036.48 (16) Å30.13 × 0.10 × 0.04 mm
Z = 2
Bruker APEX II CCD diffractometer2132 independent reflections
Radiation source: fine-focus sealed tube1843 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scanθmax = 26.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −11→11
Tmin = 0.801, Tmax = 0.936k = −11→10
10641 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0484P)2 + 0.4096P] where P = (Fo2 + 2Fc2)/3
2132 reflections(Δ/σ)max = 0.001
178 parametersΔρmax = 0.24 e Å3
7 restraintsΔρmin = −0.25 e Å3
Experimental. Crystal grew over two weeks.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.40810 (3)0.14143 (3)−0.03697 (2)0.01731 (13)
O10.62863 (17)0.22091 (18)0.00054 (13)0.0215 (4)
O20.76041 (18)0.01355 (18)0.04928 (13)0.0244 (4)
O30.66320 (18)0.25466 (18)0.22762 (12)0.0231 (4)
O40.7113 (2)0.49433 (19)0.24802 (15)0.0329 (5)
O50.47578 (18)0.03826 (19)0.11583 (12)0.0205 (4)
H5A0.537 (3)0.098 (3)0.143 (2)0.031*
H5B0.414 (3)0.017 (3)0.1548 (19)0.031*
O60.3858 (2)0.2363 (2)−0.18070 (14)0.0321 (4)
H6A0.461 (3)0.228 (3)−0.213 (2)0.048*
H6B0.345 (3)0.315 (3)−0.193 (3)0.048*
N11.2913 (2)0.3115 (2)0.03501 (15)0.0202 (4)
N21.2660 (2)0.5038 (2)0.13927 (16)0.0226 (4)
H21.286 (3)0.584 (2)0.170 (2)0.027*
C11.3576 (2)0.4279 (3)0.08205 (18)0.0216 (5)
H11.45780.45530.07650.026*
C21.1427 (2)0.3117 (3)0.06301 (18)0.0183 (5)
C31.0189 (2)0.2181 (3)0.03410 (18)0.0194 (5)
H31.02550.1415−0.01220.023*
C40.8847 (2)0.2441 (3)0.07752 (17)0.0184 (5)
C50.8741 (3)0.3586 (2)0.15138 (18)0.0186 (5)
C60.9952 (3)0.4545 (3)0.17708 (18)0.0223 (5)
H60.98940.53120.22350.027*
C71.1273 (2)0.4306 (3)0.12990 (18)0.0198 (5)
C80.7465 (3)0.1518 (3)0.03986 (17)0.0186 (5)
C90.7389 (3)0.3696 (3)0.21238 (18)0.0192 (5)
U11U22U33U12U13U23
Co10.01344 (18)0.0164 (2)0.02276 (19)−0.00114 (11)0.00492 (12)−0.00042 (12)
O10.0138 (8)0.0209 (9)0.0299 (9)−0.0027 (6)0.0033 (6)0.0015 (7)
O20.0150 (8)0.0181 (9)0.0407 (10)−0.0024 (6)0.0061 (7)−0.0040 (7)
O30.0224 (8)0.0204 (9)0.0281 (9)−0.0014 (7)0.0093 (7)0.0020 (7)
O40.0360 (10)0.0199 (10)0.0484 (11)0.0032 (8)0.0269 (9)−0.0022 (8)
O50.0177 (8)0.0215 (9)0.0239 (9)−0.0042 (7)0.0089 (7)−0.0012 (7)
O60.0352 (11)0.0314 (11)0.0313 (10)0.0100 (8)0.0098 (8)0.0104 (8)
N10.0133 (9)0.0200 (11)0.0279 (10)−0.0017 (8)0.0052 (8)−0.0010 (8)
N20.0182 (10)0.0188 (11)0.0311 (11)−0.0050 (8)0.0045 (8)−0.0071 (9)
C10.0131 (11)0.0223 (13)0.0299 (12)−0.0033 (9)0.0044 (9)0.0010 (10)
C20.0129 (10)0.0191 (12)0.0238 (11)0.0008 (9)0.0053 (8)0.0003 (9)
C30.0152 (11)0.0174 (12)0.0262 (12)−0.0014 (9)0.0055 (9)−0.0056 (9)
C40.0126 (10)0.0172 (12)0.0260 (11)−0.0007 (9)0.0046 (8)−0.0003 (10)
C50.0154 (11)0.0170 (12)0.0244 (11)0.0033 (8)0.0062 (9)0.0002 (9)
C60.0214 (12)0.0169 (12)0.0296 (12)0.0001 (9)0.0073 (9)−0.0059 (10)
C70.0143 (11)0.0159 (12)0.0289 (12)−0.0021 (9)0.0023 (9)−0.0020 (10)
C80.0153 (11)0.0189 (13)0.0233 (11)−0.0013 (9)0.0086 (9)−0.0033 (9)
C90.0155 (11)0.0209 (13)0.0219 (11)0.0038 (9)0.0056 (9)0.0028 (9)
Co1—O12.0709 (15)N1—C21.406 (3)
Co1—O2i2.0401 (16)N2—C11.359 (3)
Co1—O52.2094 (17)N2—C71.385 (3)
Co1—O5i2.2503 (16)N2—H20.838 (17)
Co1—O62.0472 (18)C1—H10.9300
Co1—N1ii2.144 (2)C2—C31.396 (3)
O1—C81.263 (3)C2—C71.407 (3)
O2—C81.270 (3)C3—C41.398 (3)
O3—C91.272 (3)C3—H30.9300
O4—C91.263 (3)C4—C51.430 (3)
O5—H5A0.810 (16)C4—C81.507 (3)
O5—H5B0.819 (16)C5—C61.386 (3)
O6—H6A0.829 (17)C5—C91.521 (3)
O6—H6B0.812 (17)C6—C71.404 (3)
N1—C11.321 (3)C6—H60.9300
O2i—Co1—O6103.92 (8)C1—N2—H2127.0 (19)
O2i—Co1—O1155.68 (7)C7—N2—H2126.0 (19)
O6—Co1—O192.30 (7)N1—C1—N2113.83 (19)
O2i—Co1—N1ii98.46 (7)N1—C1—H1123.1
O6—Co1—N1ii95.85 (8)N2—C1—H1123.1
O1—Co1—N1ii97.75 (7)C3—C2—N1130.6 (2)
O2i—Co1—O583.25 (7)C3—C2—C7119.97 (19)
O6—Co1—O5169.87 (7)N1—C2—C7109.4 (2)
O1—Co1—O578.72 (6)C2—C3—C4117.5 (2)
N1ii—Co1—O590.07 (7)C2—C3—H3121.3
O2i—Co1—O5i80.31 (6)C4—C3—H3121.3
O6—Co1—O5i83.31 (7)C3—C4—C5122.0 (2)
O1—Co1—O5i83.79 (6)C3—C4—C8117.7 (2)
N1ii—Co1—O5i178.28 (6)C5—C4—C8120.16 (19)
O5—Co1—O5i90.98 (6)C6—C5—C4120.3 (2)
C8—O1—Co1128.08 (15)C6—C5—C9117.67 (19)
C8—O2—Co1i128.23 (15)C4—C5—C9121.7 (2)
Co1—O5—Co1i89.02 (6)C5—C6—C7117.0 (2)
Co1—O5—H5A101 (2)C5—C6—H6121.5
Co1i—O5—H5A112 (2)C7—C6—H6121.5
Co1—O5—H5B123 (2)N2—C7—C6131.4 (2)
Co1i—O5—H5B119.5 (19)N2—C7—C2105.54 (19)
H5A—O5—H5B110 (2)C6—C7—C2123.0 (2)
Co1—O6—H6A116 (2)O1—C8—O2126.7 (2)
Co1—O6—H6B123 (2)O1—C8—C4116.1 (2)
H6A—O6—H6B110 (2)O2—C8—C4117.3 (2)
C1—N1—C2104.40 (19)O4—C9—O3123.5 (2)
C1—N1—Co1iii125.01 (15)O4—C9—C5117.0 (2)
C2—N1—Co1iii129.27 (16)O3—C9—C5119.4 (2)
C1—N2—C7106.8 (2)
O2i—Co1—O1—C80.0 (3)C8—C4—C5—C914.2 (3)
O6—Co1—O1—C8−132.30 (18)C4—C5—C6—C7−1.8 (3)
N1ii—Co1—O1—C8131.48 (18)C9—C5—C6—C7171.8 (2)
O5—Co1—O1—C842.96 (18)C1—N2—C7—C6175.5 (3)
O5i—Co1—O1—C8−49.29 (18)C1—N2—C7—C2−1.3 (3)
O2i—Co1—O5—Co1i80.12 (6)C5—C6—C7—N2−179.3 (2)
O6—Co1—O5—Co1i−55.5 (4)C5—C6—C7—C2−3.0 (4)
O1—Co1—O5—Co1i−83.47 (6)C3—C2—C7—N2−177.5 (2)
N1ii—Co1—O5—Co1i178.64 (6)N1—C2—C7—N21.7 (3)
C2—N1—C1—N20.5 (3)C3—C2—C7—C65.4 (4)
Co1iii—N1—C1—N2−167.35 (16)N1—C2—C7—C6−175.5 (2)
C7—N2—C1—N10.5 (3)Co1—O1—C8—O212.4 (3)
C1—N1—C2—C3177.7 (3)Co1—O1—C8—C4−168.66 (14)
Co1iii—N1—C2—C3−15.1 (4)Co1i—O2—C8—O1−15.5 (3)
C1—N1—C2—C7−1.4 (3)Co1i—O2—C8—C4165.65 (14)
Co1iii—N1—C2—C7165.80 (16)C3—C4—C8—O1−121.1 (2)
N1—C2—C3—C4178.3 (2)C5—C4—C8—O155.9 (3)
C7—C2—C3—C4−2.7 (3)C3—C4—C8—O257.9 (3)
C2—C3—C4—C5−2.0 (3)C5—C4—C8—O2−125.1 (2)
C2—C3—C4—C8174.9 (2)C6—C5—C9—O429.5 (3)
C3—C4—C5—C64.4 (4)C4—C5—C9—O4−156.9 (2)
C8—C4—C5—C6−172.5 (2)C6—C5—C9—O3−148.4 (2)
C3—C4—C5—C9−169.0 (2)C4—C5—C9—O325.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3iv0.84 (2)2.06 (2)2.885 (3)168 (3)
O5—H5A···O30.81 (2)2.04 (2)2.844 (2)171 (3)
O5—H5B···O4v0.82 (2)1.80 (2)2.609 (2)171 (3)
O6—H6A···O3vi0.83 (2)2.05 (2)2.863 (2)167 (3)
O6—H6B···O4vii0.81 (2)1.91 (2)2.706 (3)164 (3)
C3—H3···O2viii0.932.463.160 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O3i0.838 (17)2.060 (18)2.885 (3)168 (3)
O5—H5A⋯O30.810 (16)2.042 (18)2.844 (2)171 (3)
O5—H5B⋯O4ii0.819 (16)1.797 (17)2.609 (2)171 (3)
O6—H6A⋯O3iii0.829 (17)2.047 (19)2.863 (2)167 (3)
O6—H6B⋯O4iv0.812 (17)1.91 (2)2.706 (3)164 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Functional porous coordination polymers.

Authors:  Susumu Kitagawa; Ryo Kitaura; Shin-ichiro Noro
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-26       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Modular chemistry: secondary building units as a basis for the design of highly porous and robust metal-organic carboxylate frameworks.

Authors:  M Eddaoudi; D B Moler; H Li; B Chen; T M Reineke; M O'Keeffe; O M Yaghi
Journal:  Acc Chem Res       Date:  2001-04       Impact factor: 22.384

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Poly[[tetraaqua-bis(μ(3)-1H-benzimidazole-5,6-dicarboxyl-ato)dicobalt(II)] trihydrate].

Authors:  Jun-Dan Fu; Zhi-Wei Tang; Ming-Yue Yuan; Yi-Hang Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-21
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.