Literature DB >> 21578668

Poly[[tetraaqua-bis(μ(3)-1H-benzimidazole-5,6-dicarboxyl-ato)dicobalt(II)] trihydrate].

Jun-Dan Fu1, Zhi-Wei Tang, Ming-Yue Yuan, Yi-Hang Wen.   

Abstract

The title complex, {[Co(2)(C(9)H(4)N(2)O(4))(2)(H(2)O)(4)]·3H(2)O}(n), was synthesized hydro-thermally. The unique Co(II) ion is coordin-ated in a distorted octa-hedral coordination environment by two water mol-ecules and three symmetry-related 1H-benzimid-azole-5,6-dicarboxyl-ate (Hbidc) ligands. The Hbidc ligands coordinate via a bis-chelating and mono-chelating carboxyl-ate group and by an imidazole group N atom, bridging the Co(II) ions and forming an extended two-dimensional structure in the ab plane. In the crystal structure, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds connect complex and solvent water mol-ecules, forming a three-dimensional supermolecular network. One of the solvent water mol-ecules lies on a twofold rotation axis.

Entities:  

Year:  2009        PMID: 21578668      PMCID: PMC2971884          DOI: 10.1107/S1600536809049083

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on carboxyl­ate ligands in coordination chemistry, see: Laduca (2009 ▶); Grodzicki et al. (2005 ▶). For the isostructural Ni(II) complex, see: Yao et al. (2008 ▶). For related structures, see: Wei et al. (2008 ▶); Xu & Yu (2009 ▶).

Experimental

Crystal data

[Co2(C9H4N2O4)2(H2O)4]·3H2O M = 652.26 Monoclinic, a = 22.4085 (18) Å b = 9.1564 (7) Å c = 13.0907 (10) Å β = 121.006 (4)° V = 2302.2 (3) Å3 Z = 4 Mo Kα radiation μ = 1.53 mm−1 T = 296 K 0.43 × 0.25 × 0.07 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.63, T max = 0.90 9315 measured reflections 2656 independent reflections 2402 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.087 S = 1.03 2656 reflections 174 parameters 6 restraints H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.63 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809049083/lh2948sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049083/lh2948Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co2(C9H4N2O4)2(H2O)4]·3H2OF(000) = 1328
Mr = 652.26Dx = 1.882 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5695 reflections
a = 22.4085 (18) Åθ = 2.1–27.6°
b = 9.1564 (7) ŵ = 1.53 mm1
c = 13.0907 (10) ÅT = 296 K
β = 121.006 (4)°Block, red
V = 2302.2 (3) Å30.43 × 0.25 × 0.07 mm
Z = 4
Bruker APEXII diffractometer2656 independent reflections
Radiation source: fine-focus sealed tube2402 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 27.6°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −29→27
Tmin = 0.63, Tmax = 0.90k = −11→11
9315 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0533P)2 + 3.4124P] where P = (Fo2 + 2Fc2)/3
2656 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.81 e Å3
6 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.199951 (12)0.14498 (3)0.12124 (2)0.01825 (10)
O1−0.19686 (7)0.44398 (15)−0.25564 (13)0.0239 (3)
O2−0.20916 (7)0.22564 (15)−0.33254 (12)0.0216 (3)
O3−0.10064 (8)−0.07292 (17)−0.23544 (16)0.0335 (4)
O3W0.20211 (8)0.25089 (16)0.26967 (13)0.0277 (3)
H3WA0.19740.34190.26900.042*
H3WB0.17060.20710.27420.042*
O4−0.14121 (7)0.02445 (15)−0.12688 (12)0.0224 (3)
O4W0.20838 (8)0.03724 (17)−0.01154 (13)0.0302 (3)
H4WA0.20190.0885−0.06960.045*
H4WB0.1863−0.0415−0.03650.045*
N10.07455 (8)0.50513 (18)−0.06630 (15)0.0222 (3)
H1A0.07160.5976−0.07940.027*
N20.12237 (8)0.28672 (18)0.00087 (15)0.0225 (3)
C1−0.09320 (9)0.3057 (2)−0.19386 (16)0.0181 (4)
C2−0.06298 (9)0.1649 (2)−0.15733 (16)0.0175 (4)
C30.00868 (10)0.1468 (2)−0.09321 (18)0.0207 (4)
H3A0.02850.0544−0.07000.025*
C40.05016 (9)0.2710 (2)−0.06466 (17)0.0195 (4)
C50.01982 (10)0.4091 (2)−0.10514 (17)0.0189 (4)
C6−0.05185 (9)0.4293 (2)−0.16866 (17)0.0195 (4)
H6A−0.07140.5216−0.19330.023*
C7−0.17032 (9)0.3262 (2)−0.26428 (16)0.0177 (3)
C8−0.10569 (9)0.0287 (2)−0.17727 (16)0.0194 (4)
C90.13324 (10)0.4278 (2)−0.00439 (18)0.0240 (4)
H9A0.17740.46910.03150.029*
O1W0.00000.24202 (17)0.25000.1066 (18)
H1W−0.03000.19170.25430.160*
O2W0.16430.75912 (17)0.00160.0530 (5)
H2WA0.14920.80720.03820.080*
H2WB0.20530.74030.05580.080*
U11U22U33U12U13U23
Co10.01193 (15)0.01637 (16)0.02247 (16)−0.00183 (8)0.00601 (11)0.00077 (9)
O10.0152 (6)0.0189 (7)0.0326 (7)0.0021 (5)0.0086 (6)−0.0031 (6)
O20.0145 (6)0.0201 (7)0.0250 (7)−0.0001 (5)0.0064 (5)−0.0035 (5)
O30.0321 (8)0.0251 (8)0.0530 (10)−0.0099 (6)0.0289 (8)−0.0140 (7)
O3W0.0269 (8)0.0208 (7)0.0381 (8)−0.0053 (6)0.0186 (7)−0.0047 (6)
O40.0197 (6)0.0207 (7)0.0290 (7)−0.0043 (5)0.0139 (6)−0.0005 (5)
O4W0.0398 (9)0.0241 (7)0.0287 (7)−0.0068 (6)0.0191 (7)−0.0012 (6)
N10.0166 (8)0.0159 (8)0.0313 (9)−0.0036 (6)0.0104 (7)−0.0003 (6)
N20.0118 (7)0.0221 (8)0.0271 (8)−0.0023 (6)0.0054 (6)0.0023 (7)
C10.0134 (8)0.0187 (9)0.0201 (8)0.0002 (7)0.0072 (7)0.0008 (7)
C20.0138 (8)0.0164 (9)0.0202 (8)−0.0008 (6)0.0072 (7)0.0011 (7)
C30.0148 (9)0.0162 (9)0.0263 (9)0.0010 (6)0.0072 (7)0.0029 (7)
C40.0123 (8)0.0212 (9)0.0219 (9)−0.0009 (7)0.0067 (7)0.0021 (7)
C50.0171 (9)0.0161 (9)0.0225 (9)−0.0024 (7)0.0095 (7)0.0000 (7)
C60.0163 (8)0.0159 (9)0.0244 (9)0.0015 (7)0.0091 (7)0.0023 (7)
C70.0135 (8)0.0176 (8)0.0208 (9)0.0006 (7)0.0079 (7)0.0026 (7)
C80.0119 (8)0.0173 (9)0.0237 (9)−0.0013 (7)0.0054 (7)0.0017 (7)
C90.0150 (9)0.0241 (10)0.0289 (10)−0.0037 (7)0.0084 (8)−0.0001 (8)
O1W0.103 (3)0.0399 (18)0.247 (6)0.0000.140 (4)0.000
O2W0.0709 (14)0.0310 (10)0.0514 (11)−0.0099 (9)0.0275 (10)−0.0037 (8)
Co1—O4i2.0603 (14)N1—C51.376 (2)
Co1—N22.0898 (16)N1—H1A0.8598
Co1—O4W2.0901 (15)N2—C91.322 (3)
Co1—O3W2.1497 (15)N2—C41.395 (2)
Co1—O2ii2.1560 (13)C1—C61.390 (3)
Co1—O1ii2.1837 (14)C1—C21.420 (3)
Co1—C7ii2.5057 (18)C1—C71.493 (2)
O1—C71.265 (2)C2—C31.386 (3)
O1—Co1iii2.1837 (14)C2—C81.511 (2)
O2—C71.266 (2)C3—C41.393 (3)
O2—Co1iii2.1560 (13)C3—H3A0.9300
O3—C81.244 (2)C4—C51.404 (3)
O3W—H3WA0.8399C5—C61.389 (3)
O3W—H3WB0.8399C6—H6A0.9300
O4—C81.269 (2)C7—Co1iii2.5057 (18)
O4—Co1i2.0603 (14)C9—H9A0.9300
O4W—H4WA0.8401O1W—H1W0.8401
O4W—H4WB0.8393O2W—H2WA0.8400
N1—C91.338 (3)O2W—H2WB0.8401
O4i—Co1—N2101.30 (6)C9—N2—Co1122.80 (13)
O4i—Co1—O4W90.43 (6)C4—N2—Co1130.58 (13)
N2—Co1—O4W93.58 (7)C6—C1—C2121.02 (16)
O4i—Co1—O3W91.41 (6)C6—C1—C7117.55 (16)
N2—Co1—O3W91.38 (6)C2—C1—C7121.40 (16)
O4W—Co1—O3W174.27 (6)C3—C2—C1121.02 (16)
O4i—Co1—O2ii158.80 (5)C3—C2—C8116.03 (16)
N2—Co1—O2ii99.73 (6)C1—C2—C8122.80 (16)
O4W—Co1—O2ii90.90 (6)C2—C3—C4118.00 (17)
O3W—Co1—O2ii85.43 (5)C2—C3—H3A121.0
O4i—Co1—O1ii98.39 (5)C4—C3—H3A121.0
N2—Co1—O1ii160.30 (6)C3—C4—N2130.70 (18)
O4W—Co1—O1ii85.57 (6)C3—C4—C5120.52 (17)
O3W—Co1—O1ii88.79 (6)N2—C4—C5108.77 (16)
O2ii—Co1—O1ii60.64 (5)N1—C5—C6132.21 (18)
O4i—Co1—C7ii128.59 (6)N1—C5—C4105.67 (16)
N2—Co1—C7ii130.06 (6)C6—C5—C4122.11 (17)
O4W—Co1—C7ii88.46 (6)C5—C6—C1117.23 (17)
O3W—Co1—C7ii86.15 (6)C5—C6—H6A121.4
O2ii—Co1—C7ii30.33 (6)C1—C6—H6A121.4
O1ii—Co1—C7ii30.31 (6)O1—C7—O2119.96 (16)
C7—O1—Co1iii89.07 (11)O1—C7—C1119.97 (16)
C7—O2—Co1iii90.30 (11)O2—C7—C1120.07 (16)
Co1—O3W—H3WA119.7O1—C7—Co1iii60.62 (9)
Co1—O3W—H3WB102.7O2—C7—Co1iii59.36 (9)
H3WA—O3W—H3WB111.6C1—C7—Co1iii178.35 (14)
C8—O4—Co1i128.68 (13)O3—C8—O4125.06 (18)
Co1—O4W—H4WA116.2O3—C8—C2118.29 (17)
Co1—O4W—H4WB116.2O4—C8—C2116.53 (17)
H4WA—O4W—H4WB109.6N2—C9—N1113.50 (17)
C9—N1—C5107.24 (16)N2—C9—H9A123.3
C9—N1—H1A126.4N1—C9—H9A123.3
C5—N1—H1A126.4H2WA—O2W—H2WB102.3
C9—N2—C4104.80 (16)
O4i—Co1—N2—C9158.93 (16)C3—C4—C5—N1−177.40 (18)
O4W—Co1—N2—C9−109.92 (17)N2—C4—C5—N11.9 (2)
O3W—Co1—N2—C967.21 (17)C3—C4—C5—C63.7 (3)
O2ii—Co1—N2—C9−18.39 (18)N2—C4—C5—C6−177.00 (18)
O1ii—Co1—N2—C9−23.1 (3)N1—C5—C6—C1179.8 (2)
C7ii—Co1—N2—C9−18.9 (2)C4—C5—C6—C1−1.6 (3)
O4i—Co1—N2—C4−3.25 (19)C2—C1—C6—C5−0.9 (3)
O4W—Co1—N2—C487.90 (18)C7—C1—C6—C5−178.77 (17)
O3W—Co1—N2—C4−94.97 (18)Co1iii—O1—C7—O21.72 (18)
O2ii—Co1—N2—C4179.43 (17)Co1iii—O1—C7—C1−178.23 (15)
O1ii—Co1—N2—C4174.76 (16)Co1iii—O2—C7—O1−1.74 (18)
C7ii—Co1—N2—C4178.90 (16)Co1iii—O2—C7—C1178.21 (15)
C6—C1—C2—C31.4 (3)C6—C1—C7—O1−30.8 (3)
C7—C1—C2—C3179.21 (18)C2—C1—C7—O1151.34 (18)
C6—C1—C2—C8176.81 (17)C6—C1—C7—O2149.27 (18)
C7—C1—C2—C8−5.4 (3)C2—C1—C7—O2−28.6 (3)
C1—C2—C3—C40.6 (3)Co1i—O4—C8—O30.8 (3)
C8—C2—C3—C4−175.08 (17)Co1i—O4—C8—C2−175.08 (12)
C2—C3—C4—N2177.8 (2)C3—C2—C8—O3−62.2 (2)
C2—C3—C4—C5−3.1 (3)C1—C2—C8—O3122.2 (2)
C9—N2—C4—C3177.6 (2)C3—C2—C8—O4114.0 (2)
Co1—N2—C4—C3−17.9 (3)C1—C2—C8—O4−61.7 (2)
C9—N2—C4—C5−1.6 (2)C4—N2—C9—N10.7 (2)
Co1—N2—C4—C5162.99 (14)Co1—N2—C9—N1−165.38 (14)
C9—N1—C5—C6177.3 (2)C5—N1—C9—N20.4 (2)
C9—N1—C5—C4−1.4 (2)
D—H···AD—HH···AD···AD—H···A
O3W—H3WA···O1iv0.841.972.798 (2)170
N1—H1A···O1Wiv0.862.453.130 (2)136
O2W—H2WA···O4iv0.841.992.78546157
O3W—H3WB···O3i0.841.852.641 (2)158
O4W—H4WB···O3v0.842.603.095 (2)119
O4W—H4WA···O2v0.841.862.679 (2)165
O4W—H4WB···O2Wvi0.842.022.76864148
N1—H1A···O2W0.862.312.89857125
O1W—H1W···O3vii0.841.982.8218 (18)180
O2W—H2WB···O3Wviii0.842.162.94922157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3W—H3WA⋯O1i 0.841.972.798 (2)170
N1—H1A⋯O1W i 0.862.453.130 (2)136
O2W—H2WA⋯O4i 0.841.992.786157
O3W—H3WB⋯O3ii 0.841.852.641 (2)158
O4W—H4WB⋯O3iii 0.842.603.095 (2)119
O4W—H4WA⋯O2iii 0.841.862.679 (2)165
O4W—H4WB⋯O2W iv 0.842.022.769148
N1—H1A⋯O2W 0.862.312.899125
O1W—H1W⋯O3v 0.841.982.8218 (18)180
O2W—H2WB⋯O3W vi 0.842.162.949157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[di-μ-aqua-bis[aqua-cobalt(II)]]-bis(μ(3)-1H-benzimidazole-5,6-dicarboxylato].

Authors:  Kai Xu; Li-Ping Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21
  2 in total
  1 in total

1.  catena-Poly[[[triaqua-europium(III)]-μ-(1H-benzimidazole-5,6-dicarboxyl-ato-κO:O)-μ-(1H,3H-benzimidazol-3-ium-5,6-dicarboxyl-ato-κO:O,O)] dihydrate].

Authors:  Xiao-Ye Chen; Shu-Min Huo; Jing-Jun Lin; Xia Cai; Rong-Hua Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  1 in total

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