Literature DB >> 21582034

Rietveld refinement of Sr(5)(AsO(4))(3)Cl from high-resolution synchrotron data.

Anthony M T Bell, C Michael B Henderson, Richard F Wendlandt, Wendy J Harrison.   

Abstract

The apatite-type compound, penta-strontium tris-[arsenate(V)] chloride, Sr(5)(AsO(4))(3)Cl, has been synthesized by ion exchange at high temperature from a synthetic sample of mimetite [Pb(5)(AsO(4))(3)Cl] with SrCO(3) as a by-product. The results of the Rietveld refinement, based on high resolution synchrotron X-ray powder diffraction data, show that the title compound crystallizes in the same structure as other halogenoapatites with general formula A(5)(YO(4))(3)X (A = divalent cation, Y = penta-valent cation, and X = F, Cl or Br) in the space group P6(3)/m. The structure consists of isolated tetra-hedral AsO(4) (3-) anions (the As atom and two O atoms have m symmetry), separated by two crystallographically independent Sr(2+) cations that are located on mirror planes and threefold rotation axes, respectively. One Sr atom is coordinated by nine O atoms and the other by six. The chloride anions (site symmetry ) are at the 2a sites and are located in the channels of the structure.

Entities:  

Year:  2009        PMID: 21582034      PMCID: PMC2968429          DOI: 10.1107/S1600536809005054

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal chemistry of apatites, see: Mercier et al. (2005 ▶); White & ZhiLi (2003 ▶); Wu et al. (2003 ▶). For powder diffraction data on Sr As-apatite, see: Kreidler & Hummel (1970 ▶). Atomic coordinates as starting parameters for the Rietveld (Rietveld, 1969 ▶) refinement of the present phases were taken from Bell et al. (2008 ▶); Dai et al. (1991 ▶); de Villiers et al. (1971 ▶). For related Sr—Cl-apatites, see: Đordević et al. (2008 ▶); Sudarsanan & Young, (1974 ▶, 1980 ▶); Beck et al. (2006 ▶); Noetzold et al. (1995 ▶); Noetzold & Wulff (1996 ▶, 1997 ▶, 1998 ▶); Swafford & Holt (2002 ▶); Wardojo & Hwu (1996 ▶). For synthetic work, see: Baker (1966 ▶); Essington (1988 ▶); Harrison et al. (2002 ▶).

Experimental

Crystal data

Sr5(AsO4)3Cl M = 890.31 Hexagonal, a = 10.1969 (1) Å c = 7.28108 (9) Å V = 655.63 (2) Å3 Z = 2 Synchrotron radiation λ = 0.998043 Å T = 298 K Specimen shape: cylinder 40 × 0.7 × 0.7 mm Specimen prepared at 100 kPa Specimen prepared at 1258 K Particle morphology: powder, white

Data collection

In-house design diffractometer Specimen mounting: capillary Specimen mounted in transmission mode Scan method: step Absorption correction: fixed at 0 2θmin = 2, 2θmax = 60° Increment in 2θ = 0.01°

Refinement

R p = 0.052 R wp = 0.066 R exp = 0.047 R B = 0.090 S = 2.00 Excluded region(s): 2-6° 2θ Profile function: Pseudo Voigt 225 reflections 16 parameters Preferred orientation correction: none Data collection: local software; cell refinement: CELREF (Laugier & Bochu, 2003 ▶) and GSAS (Larson & Von Dreele (2004 ▶); data reduction: local software; method used to solve structure: coordinates taken from a related compound; program(s) used to refine structure: GSAS and EXPGUI (Toby, 2001 ▶); molecular graphics: VESTA (Momma & Izumi, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005054/br2096sup1.cif Rietveld powder data: contains datablocks I. DOI: 10.1107/S1600536809005054/br2096Isup2.rtv Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Sr5(AsO4)3ClDx = 4.510 (1) Mg m3
Mr = 890.31Synchrotron radiation, λ = 0.998043 Å
Hexagonal, P63/mT = 298 K
a = 10.1969 (1) ÅParticle morphology: powder
c = 7.28108 (9) Åwhite
V = 655.63 (2) Å3cylinder, 40 × 0.7 mm
Z = 2Specimen preparation: Prepared at 1258 K and 100 kPa
In-house design diffractometerData collection mode: transmission
Radiation source: SynchrotronScan method: step
Si(111) channel-cut crystalmin = 6°, 2θmax = 60°, 2θstep = 0.01°
Specimen mounting: capillary
Rp = 0.052Profile function: Pseudo Voigt
Rwp = 0.06616 parameters
Rexp = 0.0470 restraints
RBragg = 0.0904 constraints
R(F2) = 0.33148(Δ/σ)max = 0.001
χ2 = 3.992Background function: Cosine Fourier Series
5801 data pointsPreferred orientation correction: None
Excluded region(s): 2-6° 2θ
Experimental. Absorption correction fixed at zero, all attempts to refine this term in GSAS were unsuccessful so this term was fixed at zero. CELREF was used for initial lattice parameter determinations before Rietveld refinement. Lattice parameters from GSAS refinement are quoted in the paper.
xyzUiso*/Ueq
Sr10.333330.666670.008 (1)0.0246 (9)
Sr20.2496 (5)0.9936 (6)0.250.0246 (9)
As10.4057 (5)0.3718 (5)0.250.029 (2)
O10.337 (3)0.496 (2)0.250.015 (4)
O20.598 (2)0.464 (2)0.250.015 (4)
O30.354 (2)0.284 (2)0.063 (2)0.015 (4)
Cl10.00000.00000.00000.031 (5)
Sr1—O1i2.49 (2)Sr2—O3vi2.44 (1)
Sr1—O1ii2.49 (2)Sr2—O3vii2.94 (1)
Sr1—O12.49 (2)Sr2—O3viii2.94 (1)
Sr1—O2iii2.59 (2)Sr2—O1ii3.02 (2)
Sr1—O2iv2.59 (2)Sr2—Cl1viii3.156 (3)
Sr1—O2v2.59 (2)Sr2—Cl1ix3.156 (3)
Sr1—O3iv3.01 (1)As1—O31.57 (1)
Sr1—O3iii3.01 (1)As1—O3x1.57 (1)
Sr1—O3v3.01 (1)As1—O11.72 (2)
Sr2—O2i2.53 (2)As1—O21.70 (2)
Sr2—O3iv2.44 (1)
O3—As1—O3x121 (1)O3—As1—O2106.3 (6)
O3—As1—O1105.8 (7)O3x—As1—O2106.3 (6)
O3x—As1—O1105.8 (7)O1—As1—O2112 (1)
Sr1—O12.49 (2)
Sr1—O2i2.59 (2)
Sr1—O3i3.01 (1)
Sr2—O2ii2.53 (2)
Sr2—O3iii2.44 (1)
Sr2—O3iv2.94 (1)
Sr2—O1v3.02 (2)
Sr2—Cl1iv3.156 (3)
As1—O31.57 (1)
As1—O11.72 (2)
As1—O21.70 (2)
O3—As1—O3vi121 (1)
O3—As1—O1105.8 (7)
O3—As1—O2106.3 (6)
O1—As1—O2112 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  5 in total

1.  Structural derivation and crystal chemistry of apatites.

Authors:  T J White; Dong ZhiLi
Journal:  Acta Crystallogr B       Date:  2003-01-28

2.  Prediction of apatite lattice constants from their constituent elemental radii and artificial intelligence methods.

Authors:  P Wu; Y Z Zeng; C M Wang
Journal:  Biomaterials       Date:  2004-03       Impact factor: 12.479

3.  Geometrical parameterization of the crystal chemistry of P6(3)/m apatites: comparison with experimental data and ab initio results.

Authors:  Patrick H J Mercier; Yvon Le Page; Pamela S Whitfield; Lyndon D Mitchell; Isobel J Davidson; T J White
Journal:  Acta Crystallogr B       Date:  2005-11-14

4.  Rietveld refinement of Ba(5)(AsO(4))(3)Cl from high-resolution synchrotron data.

Authors:  Anthony M T Bell; C Michael B Henderson; Richard F Wendlandt; Wendy J Harrison
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

5.  Sr, Ba and Cd arsenates with the apatite-type structure.

Authors:  Tamara Dordević; Sabina Sutović; Jovica Stojanović; Ljiljana Karanović
Journal:  Acta Crystallogr C       Date:  2008-08-09       Impact factor: 1.172

  5 in total

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