| Literature DB >> 21582004 |
Jiří Hanusek, Miloš Sedlák, Pavel Drabina, Aleš Ružička.
Abstract
The title mol-ecule, C(13)H(17)ClEntities:
Year: 2009 PMID: 21582004 PMCID: PMC2968153 DOI: 10.1107/S1600536809002153
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H17ClN3OS+·Br− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 11663 reflections |
| θ = 1–27.5° | |
| µ = 2.91 mm−1 | |
| β = 100.758 (7)° | Block, colourless |
| 0.41 × 0.40 × 0.22 mm | |
| Bruker–Nonius KappaCCD diffractometer | 3455 independent reflections |
| Radiation source: fine-focus sealed tube | 2671 reflections with |
| graphite | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.8° |
| φ and ω scans | |
| Absorption correction: gaussian integration (Coppens, 1970) | |
| 11628 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3455 reflections | (Δ/σ)max < 0.001 |
| 189 parameters | Δρmax = 0.74 e Å−3 |
| 0 restraints | Δρmin = −0.82 e Å−3 |
| 60 constraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.08338 (3) | 0.66896 (5) | 0.14195 (3) | 0.02613 (13) | |
| S1 | 0.16212 (7) | 0.32645 (15) | 0.36335 (7) | 0.0259 (2) | |
| Cl1 | 0.62396 (8) | −0.16871 (15) | 0.42796 (8) | 0.0356 (3) | |
| N3 | 0.1148 (2) | 0.0146 (5) | 0.2861 (3) | 0.0225 (7) | |
| H3 | 0.095 (3) | −0.053 (7) | 0.245 (3) | 0.027* | |
| O1 | 0.3250 (2) | 0.1248 (4) | 0.3000 (2) | 0.0340 (7) | |
| C1 | 0.3345 (3) | 0.2769 (5) | 0.3210 (3) | 0.0219 (8) | |
| N1 | 0.4148 (2) | 0.3623 (4) | 0.3524 (2) | 0.0221 (7) | |
| N2 | 0.0914 (2) | 0.2457 (5) | 0.1804 (3) | 0.0244 (7) | |
| H2 | 0.094 (3) | 0.350 (7) | 0.178 (4) | 0.029* | |
| C11 | 0.1189 (2) | 0.1804 (5) | 0.2677 (3) | 0.0207 (8) | |
| C6 | 0.5171 (3) | 0.1131 (5) | 0.3865 (3) | 0.0211 (8) | |
| H6 | 0.4680 | 0.0399 | 0.3948 | 0.025* | |
| C7 | 0.6049 (3) | 0.0507 (5) | 0.3989 (3) | 0.0246 (9) | |
| C10 | 0.5754 (3) | 0.3920 (6) | 0.3476 (3) | 0.0261 (9) | |
| H10 | 0.5652 | 0.5102 | 0.3293 | 0.031* | |
| C13 | 0.1428 (3) | −0.0649 (6) | 0.3822 (3) | 0.0338 (11) | |
| H13A | 0.2066 | −0.0358 | 0.4080 | 0.051* | |
| H13B | 0.1362 | −0.1912 | 0.3763 | 0.051* | |
| H13C | 0.1044 | −0.0211 | 0.4267 | 0.051* | |
| C9 | 0.6624 (3) | 0.3230 (6) | 0.3608 (3) | 0.0278 (9) | |
| H9 | 0.7118 | 0.3945 | 0.3513 | 0.033* | |
| C4 | 0.2588 (3) | 0.4101 (6) | 0.3153 (3) | 0.0244 (9) | |
| H4 | 0.2380 | 0.4459 | 0.2456 | 0.029* | |
| C2 | 0.4027 (3) | 0.5482 (5) | 0.3675 (3) | 0.0253 (9) | |
| H2A | 0.4168 | 0.6166 | 0.3119 | 0.030* | |
| H2B | 0.4421 | 0.5883 | 0.4286 | 0.030* | |
| C5 | 0.5029 (3) | 0.2873 (5) | 0.3613 (3) | 0.0214 (8) | |
| C12 | 0.0567 (3) | 0.1404 (6) | 0.0946 (3) | 0.0341 (11) | |
| H12A | 0.1048 | 0.0626 | 0.0814 | 0.051* | |
| H12B | 0.0372 | 0.2163 | 0.0381 | 0.051* | |
| H12C | 0.0048 | 0.0716 | 0.1067 | 0.051* | |
| C3 | 0.3028 (3) | 0.5640 (6) | 0.3739 (4) | 0.0333 (10) | |
| H3A | 0.2770 | 0.6748 | 0.3451 | 0.040* | |
| H3B | 0.2943 | 0.5575 | 0.4427 | 0.040* | |
| C8 | 0.6784 (3) | 0.1510 (6) | 0.3878 (3) | 0.0269 (9) | |
| H8 | 0.7382 | 0.1040 | 0.3983 | 0.032* |
| Br1 | 0.0262 (2) | 0.0177 (2) | 0.0348 (2) | 0.00117 (17) | 0.00640 (16) | 0.00120 (18) |
| S1 | 0.0265 (5) | 0.0298 (6) | 0.0225 (5) | 0.0025 (4) | 0.0072 (4) | −0.0046 (4) |
| Cl1 | 0.0406 (6) | 0.0266 (6) | 0.0408 (6) | 0.0100 (5) | 0.0110 (5) | 0.0056 (5) |
| N3 | 0.0272 (18) | 0.0174 (17) | 0.0243 (17) | 0.0039 (14) | 0.0076 (14) | 0.0040 (14) |
| O1 | 0.0263 (16) | 0.0280 (17) | 0.0495 (19) | −0.0037 (12) | 0.0118 (14) | −0.0165 (15) |
| C1 | 0.020 (2) | 0.024 (2) | 0.0221 (19) | 0.0002 (16) | 0.0055 (15) | −0.0043 (17) |
| N1 | 0.0251 (17) | 0.0195 (18) | 0.0217 (16) | −0.0013 (14) | 0.0049 (13) | −0.0019 (14) |
| N2 | 0.0302 (19) | 0.0190 (18) | 0.0231 (17) | −0.0002 (15) | 0.0030 (14) | 0.0019 (16) |
| C11 | 0.0189 (18) | 0.023 (2) | 0.0203 (18) | 0.0039 (16) | 0.0055 (14) | −0.0034 (17) |
| C6 | 0.025 (2) | 0.0185 (19) | 0.0207 (19) | −0.0008 (15) | 0.0072 (15) | −0.0007 (16) |
| C7 | 0.032 (2) | 0.022 (2) | 0.0211 (19) | 0.0008 (17) | 0.0084 (17) | −0.0003 (17) |
| C10 | 0.028 (2) | 0.025 (2) | 0.025 (2) | −0.0053 (17) | 0.0041 (16) | 0.0003 (18) |
| C13 | 0.040 (3) | 0.031 (3) | 0.031 (2) | 0.013 (2) | 0.011 (2) | 0.014 (2) |
| C9 | 0.027 (2) | 0.032 (2) | 0.024 (2) | −0.0101 (19) | 0.0045 (16) | −0.0005 (19) |
| C4 | 0.024 (2) | 0.026 (2) | 0.023 (2) | −0.0019 (17) | 0.0037 (16) | −0.0023 (18) |
| C2 | 0.030 (2) | 0.018 (2) | 0.025 (2) | 0.0010 (16) | −0.0010 (17) | 0.0004 (17) |
| C5 | 0.023 (2) | 0.024 (2) | 0.0176 (18) | −0.0012 (15) | 0.0054 (15) | −0.0028 (16) |
| C12 | 0.048 (3) | 0.028 (3) | 0.023 (2) | −0.003 (2) | −0.0016 (19) | −0.0004 (19) |
| C3 | 0.031 (2) | 0.027 (2) | 0.041 (3) | 0.0028 (18) | 0.0038 (19) | −0.012 (2) |
| C8 | 0.024 (2) | 0.038 (3) | 0.0196 (19) | 0.0029 (18) | 0.0055 (15) | −0.0030 (19) |
| S1—C11 | 1.770 (4) | C10—C5 | 1.391 (6) |
| S1—C4 | 1.819 (4) | C10—H10 | 0.9500 |
| Cl1—C7 | 1.749 (4) | C13—H13A | 0.9800 |
| N3—C11 | 1.307 (5) | C13—H13B | 0.9800 |
| N3—C13 | 1.459 (5) | C13—H13C | 0.9800 |
| N3—H3 | 0.80 (5) | C9—C8 | 1.385 (6) |
| O1—C1 | 1.210 (5) | C9—H9 | 0.9500 |
| C1—N1 | 1.367 (5) | C4—C3 | 1.518 (6) |
| C1—C4 | 1.518 (6) | C4—H4 | 1.0000 |
| N1—C5 | 1.421 (5) | C2—C3 | 1.516 (6) |
| N1—C2 | 1.464 (5) | C2—H2A | 0.9900 |
| N2—C11 | 1.309 (5) | C2—H2B | 0.9900 |
| N2—C12 | 1.456 (5) | C12—H12A | 0.9800 |
| N2—H2 | 0.81 (5) | C12—H12B | 0.9800 |
| C6—C7 | 1.377 (6) | C12—H12C | 0.9800 |
| C6—C5 | 1.394 (6) | C3—H3A | 0.9900 |
| C6—H6 | 0.9500 | C3—H3B | 0.9900 |
| C7—C8 | 1.375 (6) | C8—H8 | 0.9500 |
| C10—C9 | 1.385 (6) | ||
| C11—S1—C4 | 98.74 (18) | C10—C9—H9 | 119.6 |
| C11—N3—C13 | 125.0 (4) | C8—C9—H9 | 119.6 |
| C11—N3—H3 | 122 (4) | C3—C4—C1 | 104.8 (3) |
| C13—N3—H3 | 113 (4) | C3—C4—S1 | 111.9 (3) |
| O1—C1—N1 | 126.8 (4) | C1—C4—S1 | 112.1 (3) |
| O1—C1—C4 | 126.1 (4) | C3—C4—H4 | 109.3 |
| N1—C1—C4 | 107.0 (3) | C1—C4—H4 | 109.3 |
| C1—N1—C5 | 125.1 (3) | S1—C4—H4 | 109.3 |
| C1—N1—C2 | 113.0 (3) | N1—C2—C3 | 103.7 (3) |
| C5—N1—C2 | 121.5 (3) | N1—C2—H2A | 111.0 |
| C11—N2—C12 | 123.3 (4) | C3—C2—H2A | 111.0 |
| C11—N2—H2 | 114 (4) | N1—C2—H2B | 111.0 |
| C12—N2—H2 | 122 (4) | C3—C2—H2B | 111.0 |
| N3—C11—N2 | 122.6 (4) | H2A—C2—H2B | 109.0 |
| N3—C11—S1 | 119.9 (3) | C10—C5—C6 | 120.4 (4) |
| N2—C11—S1 | 117.4 (3) | C10—C5—N1 | 118.9 (4) |
| C7—C6—C5 | 117.7 (4) | C6—C5—N1 | 120.6 (4) |
| C7—C6—H6 | 121.1 | N2—C12—H12A | 109.5 |
| C5—C6—H6 | 121.1 | N2—C12—H12B | 109.5 |
| C8—C7—C6 | 123.4 (4) | H12A—C12—H12B | 109.5 |
| C8—C7—Cl1 | 118.1 (3) | N2—C12—H12C | 109.5 |
| C6—C7—Cl1 | 118.5 (3) | H12A—C12—H12C | 109.5 |
| C9—C10—C5 | 119.6 (4) | H12B—C12—H12C | 109.5 |
| C9—C10—H10 | 120.2 | C2—C3—C4 | 103.8 (3) |
| C5—C10—H10 | 120.2 | C2—C3—H3A | 111.0 |
| N3—C13—H13A | 109.5 | C4—C3—H3A | 111.0 |
| N3—C13—H13B | 109.5 | C2—C3—H3B | 111.0 |
| H13A—C13—H13B | 109.5 | C4—C3—H3B | 111.0 |
| N3—C13—H13C | 109.5 | H3A—C3—H3B | 109.0 |
| H13A—C13—H13C | 109.5 | C7—C8—C9 | 117.9 (4) |
| H13B—C13—H13C | 109.5 | C7—C8—H8 | 121.1 |
| C10—C9—C8 | 120.9 (4) | C9—C8—H8 | 121.1 |
| H··· | ||||
| N3—H3···Br1i | 0.80 (5) | 2.56 (5) | 3.314 (4) | 159 (5) |
| N2—H2···Br1 | 0.81 (5) | 2.51 (5) | 3.303 (4) | 170 (5) |
| C6—H6···O1 | 0.95 | 2.38 | 2.899 (5) | 114 |
| C8—H8···Br1ii | 0.95 | 2.87 | 3.662 (5) | 142 |
| C2—H2A···Cg1iii | 0.99 | 2.69 | 3.628 (4) | 159 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C5–C10 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯Br1i | 0.80 (5) | 2.56 (5) | 3.314 (4) | 159 (5) |
| N2—H2⋯Br1 | 0.81 (5) | 2.51 (5) | 3.303 (4) | 170 (5) |
| C6—H6⋯O1 | 0.95 | 2.38 | 2.899 (5) | 114 |
| C8—H8⋯Br1ii | 0.95 | 2.87 | 3.662 (5) | 142 |
| C2—H2 | 0.99 | 2.69 | 3.628 (4) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) .