Literature DB >> 21582004

(3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-rolidin-3-yl]-N,N'-dimethyl-thio-uronium bromide.

Jiří Hanusek, Miloš Sedlák, Pavel Drabina, Aleš Ružička.   

Abstract

The title mol-ecule, C(13)H(17)Cln class="Chemical">N(3)OS(+)·Br(-), consists of benzene and pyrrolidine rings and an S-C(NHCH(3))(2) group. The central C-N bond lengths in the S-C(NHCH(3))(2) fragment indicate partial double-bond character. Mol-ecules are inter-connected into chains by N-H⋯Br hydrogen bonds and the chains are linked into pairs by weak C-H⋯Br hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582004      PMCID: PMC2968153          DOI: 10.1107/S1600536809002153

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the reactivity of the title compound, see: Hanusek et al. (2004 ▶); Sedlák et al. (2002 ▶, 2003 ▶). For a related structure, see: Hanusek et al. (2009 ▶).

Experimental

Crystal data

C13H17ClN3OSn class="Chemical">Br− M = 378.72 Monoclinic, a = 14.9409 (9) Å b = 7.7050 (5) Å c = 13.9141 (15) Å β = 100.758 (7)° V = 1573.6 (2) Å3 Z = 4 Mo Kα radiation μ = 2.91 mm−1 T = 150 (2) K 0.41 × 0.40 × 0.22 mm

Data collection

Bruker–n class="Chemical">Nonius KappaCCD diffractometer Absorption correction: gaussian integration (Coppens, 1970 ▶) T min = 0.401, T max = 0.658 11628 measured reflections 3455 independent reflections 2671 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.114 S = 1.22 3455 reflections 189 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.74 e Å−3 Δρmin = −0.82 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶) and DENZO (Otwinowski and Minor, 1997 ▶); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809002153/fb2123sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002153/fb2123Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17ClN3OS+·BrF(000) = 768
Mr = 378.72Dx = 1.599 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 11663 reflections
a = 14.9409 (9) Åθ = 1–27.5°
b = 7.7050 (5) ŵ = 2.91 mm1
c = 13.9141 (15) ÅT = 150 K
β = 100.758 (7)°Block, colourless
V = 1573.6 (2) Å30.41 × 0.40 × 0.22 mm
Z = 4
Bruker–Nonius KappaCCD diffractometer3455 independent reflections
Radiation source: fine-focus sealed tube2671 reflections with I > 2σ(I)
graphiteRint = 0.060
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 2.8°
φ and ω scansh = −19→16
Absorption correction: gaussian integration (Coppens, 1970)k = −8→9
Tmin = 0.401, Tmax = 0.658l = −17→18
11628 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: difference Fourier map
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.22w = 1/[σ2(Fo2) + (0.0325P)2 + 3.4975P] where P = (Fo2 + 2Fc2)/3
3455 reflections(Δ/σ)max < 0.001
189 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.82 e Å3
60 constraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.08338 (3)0.66896 (5)0.14195 (3)0.02613 (13)
S10.16212 (7)0.32645 (15)0.36335 (7)0.0259 (2)
Cl10.62396 (8)−0.16871 (15)0.42796 (8)0.0356 (3)
N30.1148 (2)0.0146 (5)0.2861 (3)0.0225 (7)
H30.095 (3)−0.053 (7)0.245 (3)0.027*
O10.3250 (2)0.1248 (4)0.3000 (2)0.0340 (7)
C10.3345 (3)0.2769 (5)0.3210 (3)0.0219 (8)
N10.4148 (2)0.3623 (4)0.3524 (2)0.0221 (7)
N20.0914 (2)0.2457 (5)0.1804 (3)0.0244 (7)
H20.094 (3)0.350 (7)0.178 (4)0.029*
C110.1189 (2)0.1804 (5)0.2677 (3)0.0207 (8)
C60.5171 (3)0.1131 (5)0.3865 (3)0.0211 (8)
H60.46800.03990.39480.025*
C70.6049 (3)0.0507 (5)0.3989 (3)0.0246 (9)
C100.5754 (3)0.3920 (6)0.3476 (3)0.0261 (9)
H100.56520.51020.32930.031*
C130.1428 (3)−0.0649 (6)0.3822 (3)0.0338 (11)
H13A0.2066−0.03580.40800.051*
H13B0.1362−0.19120.37630.051*
H13C0.1044−0.02110.42670.051*
C90.6624 (3)0.3230 (6)0.3608 (3)0.0278 (9)
H90.71180.39450.35130.033*
C40.2588 (3)0.4101 (6)0.3153 (3)0.0244 (9)
H40.23800.44590.24560.029*
C20.4027 (3)0.5482 (5)0.3675 (3)0.0253 (9)
H2A0.41680.61660.31190.030*
H2B0.44210.58830.42860.030*
C50.5029 (3)0.2873 (5)0.3613 (3)0.0214 (8)
C120.0567 (3)0.1404 (6)0.0946 (3)0.0341 (11)
H12A0.10480.06260.08140.051*
H12B0.03720.21630.03810.051*
H12C0.00480.07160.10670.051*
C30.3028 (3)0.5640 (6)0.3739 (4)0.0333 (10)
H3A0.27700.67480.34510.040*
H3B0.29430.55750.44270.040*
C80.6784 (3)0.1510 (6)0.3878 (3)0.0269 (9)
H80.73820.10400.39830.032*
U11U22U33U12U13U23
Br10.0262 (2)0.0177 (2)0.0348 (2)0.00117 (17)0.00640 (16)0.00120 (18)
S10.0265 (5)0.0298 (6)0.0225 (5)0.0025 (4)0.0072 (4)−0.0046 (4)
Cl10.0406 (6)0.0266 (6)0.0408 (6)0.0100 (5)0.0110 (5)0.0056 (5)
N30.0272 (18)0.0174 (17)0.0243 (17)0.0039 (14)0.0076 (14)0.0040 (14)
O10.0263 (16)0.0280 (17)0.0495 (19)−0.0037 (12)0.0118 (14)−0.0165 (15)
C10.020 (2)0.024 (2)0.0221 (19)0.0002 (16)0.0055 (15)−0.0043 (17)
N10.0251 (17)0.0195 (18)0.0217 (16)−0.0013 (14)0.0049 (13)−0.0019 (14)
N20.0302 (19)0.0190 (18)0.0231 (17)−0.0002 (15)0.0030 (14)0.0019 (16)
C110.0189 (18)0.023 (2)0.0203 (18)0.0039 (16)0.0055 (14)−0.0034 (17)
C60.025 (2)0.0185 (19)0.0207 (19)−0.0008 (15)0.0072 (15)−0.0007 (16)
C70.032 (2)0.022 (2)0.0211 (19)0.0008 (17)0.0084 (17)−0.0003 (17)
C100.028 (2)0.025 (2)0.025 (2)−0.0053 (17)0.0041 (16)0.0003 (18)
C130.040 (3)0.031 (3)0.031 (2)0.013 (2)0.011 (2)0.014 (2)
C90.027 (2)0.032 (2)0.024 (2)−0.0101 (19)0.0045 (16)−0.0005 (19)
C40.024 (2)0.026 (2)0.023 (2)−0.0019 (17)0.0037 (16)−0.0023 (18)
C20.030 (2)0.018 (2)0.025 (2)0.0010 (16)−0.0010 (17)0.0004 (17)
C50.023 (2)0.024 (2)0.0176 (18)−0.0012 (15)0.0054 (15)−0.0028 (16)
C120.048 (3)0.028 (3)0.023 (2)−0.003 (2)−0.0016 (19)−0.0004 (19)
C30.031 (2)0.027 (2)0.041 (3)0.0028 (18)0.0038 (19)−0.012 (2)
C80.024 (2)0.038 (3)0.0196 (19)0.0029 (18)0.0055 (15)−0.0030 (19)
S1—C111.770 (4)C10—C51.391 (6)
S1—C41.819 (4)C10—H100.9500
Cl1—C71.749 (4)C13—H13A0.9800
N3—C111.307 (5)C13—H13B0.9800
N3—C131.459 (5)C13—H13C0.9800
N3—H30.80 (5)C9—C81.385 (6)
O1—C11.210 (5)C9—H90.9500
C1—N11.367 (5)C4—C31.518 (6)
C1—C41.518 (6)C4—H41.0000
N1—C51.421 (5)C2—C31.516 (6)
N1—C21.464 (5)C2—H2A0.9900
N2—C111.309 (5)C2—H2B0.9900
N2—C121.456 (5)C12—H12A0.9800
N2—H20.81 (5)C12—H12B0.9800
C6—C71.377 (6)C12—H12C0.9800
C6—C51.394 (6)C3—H3A0.9900
C6—H60.9500C3—H3B0.9900
C7—C81.375 (6)C8—H80.9500
C10—C91.385 (6)
C11—S1—C498.74 (18)C10—C9—H9119.6
C11—N3—C13125.0 (4)C8—C9—H9119.6
C11—N3—H3122 (4)C3—C4—C1104.8 (3)
C13—N3—H3113 (4)C3—C4—S1111.9 (3)
O1—C1—N1126.8 (4)C1—C4—S1112.1 (3)
O1—C1—C4126.1 (4)C3—C4—H4109.3
N1—C1—C4107.0 (3)C1—C4—H4109.3
C1—N1—C5125.1 (3)S1—C4—H4109.3
C1—N1—C2113.0 (3)N1—C2—C3103.7 (3)
C5—N1—C2121.5 (3)N1—C2—H2A111.0
C11—N2—C12123.3 (4)C3—C2—H2A111.0
C11—N2—H2114 (4)N1—C2—H2B111.0
C12—N2—H2122 (4)C3—C2—H2B111.0
N3—C11—N2122.6 (4)H2A—C2—H2B109.0
N3—C11—S1119.9 (3)C10—C5—C6120.4 (4)
N2—C11—S1117.4 (3)C10—C5—N1118.9 (4)
C7—C6—C5117.7 (4)C6—C5—N1120.6 (4)
C7—C6—H6121.1N2—C12—H12A109.5
C5—C6—H6121.1N2—C12—H12B109.5
C8—C7—C6123.4 (4)H12A—C12—H12B109.5
C8—C7—Cl1118.1 (3)N2—C12—H12C109.5
C6—C7—Cl1118.5 (3)H12A—C12—H12C109.5
C9—C10—C5119.6 (4)H12B—C12—H12C109.5
C9—C10—H10120.2C2—C3—C4103.8 (3)
C5—C10—H10120.2C2—C3—H3A111.0
N3—C13—H13A109.5C4—C3—H3A111.0
N3—C13—H13B109.5C2—C3—H3B111.0
H13A—C13—H13B109.5C4—C3—H3B111.0
N3—C13—H13C109.5H3A—C3—H3B109.0
H13A—C13—H13C109.5C7—C8—C9117.9 (4)
H13B—C13—H13C109.5C7—C8—H8121.1
C10—C9—C8120.9 (4)C9—C8—H8121.1
D—H···AD—HH···AD···AD—H···A
N3—H3···Br1i0.80 (5)2.56 (5)3.314 (4)159 (5)
N2—H2···Br10.81 (5)2.51 (5)3.303 (4)170 (5)
C6—H6···O10.952.382.899 (5)114
C8—H8···Br1ii0.952.873.662 (5)142
C2—H2A···Cg1iii0.992.693.628 (4)159
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯Br1i0.80 (5)2.56 (5)3.314 (4)159 (5)
N2—H2⋯Br10.81 (5)2.51 (5)3.303 (4)170 (5)
C6—H6⋯O10.952.382.899 (5)114
C8—H8⋯Br1ii0.952.873.662 (5)142
C2—H2ACg1iii0.992.693.628 (4)159

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-roli-din-3-yl]thio-uronium bromide.

Authors:  Jiří Hanusek; Miloš Sedlák; Pavel Drabina; Aleš Ružička
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28

3.  Influence of substitution on kinetics and mechanism of ring transformation of substituted S-[1-phenylpyrrolidin-2-on-3-yl]isothiuronium salts.

Authors:  Jirí Hanusek; Ludmila Hejtmánková; Vojeslav Sterba; Milos Sedlák
Journal:  Org Biomol Chem       Date:  2004-05-13       Impact factor: 3.876

4.  Kinetics and mechanism of ring transformation of S-[1-(4-methoxyphenyl)pyrrolidin-2-on-3-yl]isothiuronium bromide to 2-methylimino-5-[2-(4-methoxyphenylamino)ethyl]thiazolidin-4-one.

Authors:  Milos Sedlák; Jirí Hanusek; Ludmila Hejtmánková; Pavla Kasparová
Journal:  Org Biomol Chem       Date:  2003-04-07       Impact factor: 3.876

  4 in total
  1 in total

1.  (3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-roli-din-3-yl]thio-uronium bromide.

Authors:  Jiří Hanusek; Miloš Sedlák; Pavel Drabina; Aleš Ružička
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28
  1 in total

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