Literature DB >> 21582003

(3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-roli-din-3-yl]thio-uronium bromide.

Jiří Hanusek, Miloš Sedlák, Pavel Drabina, Aleš Ružička.   

Abstract

In the title molecular salt, C(11)H(13)ClN(3)OS(+)·Br(-), the C-N bond lengths in the -S-C(NH(2))(2) fragment indicate partial double-bond character of these bonds. The constituent ions are connected by N-H⋯Br bridges into Z-shaped chains. The supra-molecular architecture of the structure can be described by being composed of these chains inter-locked by additional C-H⋯Br short contacts. An intra-molecular N-H⋯O=C bridge, as well as weak C-H⋯O hydrogen bonds, are also present in the structure.

Entities:  

Year:  2009        PMID: 21582003      PMCID: PMC2968325          DOI: 10.1107/S1600536809001603

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and reactivity of isothiuronium salts, see: Hanusek et al. (2004 ▶); Sedlák et al. (2002 ▶, 2003 ▶). For related structures, see: Bel’skii et al. (1985 ▶); Cotton et al. (2006 ▶); Hanusek et al. (2009 ▶); Ishii et al. (2000 ▶); L’abbe et al. (1980 ▶); Luger et al. (1996 ▶); Rovnyak et al. (1995 ▶); Vijayan & Mani (1977 ▶).

Experimental

Crystal data

C11H13ClN3OSBr M = 350.66 Monoclinic, a = 15.7379 (9) Å b = 6.4250 (5) Å c = 15.0531 (7) Å β = 117.329 (5)° V = 1352.22 (16) Å3 Z = 4 Mo Kα radiation μ = 3.38 mm−1 T = 150 (2) K 0.29 × 0.12 × 0.03 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: gaussian (Coppens, 1970 ▶) T min = 0.542, T max = 0.873 15769 measured reflections 3095 independent reflections 2214 reflections with I > 2σ(I) R int = 0.097

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.096 S = 1.15 3095 reflections 164 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.47 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶) and DENZO (Otwin­owski & Minor, 1997 ▶); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809001603/fb2122sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001603/fb2122Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13ClN3OS+·BrF(000) = 704
Mr = 350.66Dx = 1.722 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15779 reflections
a = 15.7379 (9) Åθ = 1–27.5°
b = 6.4250 (5) ŵ = 3.38 mm1
c = 15.0531 (7) ÅT = 150 K
β = 117.329 (5)°Plate, colourless
V = 1352.22 (16) Å30.29 × 0.12 × 0.03 mm
Z = 4
Bruker–Nonius KappaCCD diffractometer3095 independent reflections
Radiation source: fine-focus sealed tube2214 reflections with I > 2σ(I)
graphiteRint = 0.097
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 2.9°
φ and ω scansh = −20→20
Absorption correction: gaussian (Coppens, 1970)k = −7→8
Tmin = 0.542, Tmax = 0.873l = −19→19
15769 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0236P)2 + 1.6718P] where P = (Fo2 + 2Fc2)/3
S = 1.15(Δ/σ)max < 0.001
3095 reflectionsΔρmax = 0.48 e Å3
164 parametersΔρmin = −0.47 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
52 constraintsExtinction coefficient: 0.0036 (5)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.48049 (3)0.45589 (6)0.65892 (3)0.04086 (16)
S10.34553 (7)0.14593 (15)0.41198 (8)0.0339 (2)
Cl1−0.19436 (7)0.30572 (19)−0.02926 (9)0.0532 (3)
O10.21265 (19)−0.2562 (4)0.2711 (2)0.0450 (7)
C50.0464 (3)0.0076 (6)0.1482 (3)0.0295 (8)
C6−0.0184 (3)0.1577 (6)0.0890 (3)0.0330 (9)
H60.00400.28710.07740.040*
C40.3119 (3)0.0455 (6)0.2870 (3)0.0346 (9)
H40.3640−0.04040.28520.042*
C110.3880 (2)−0.0716 (6)0.4901 (3)0.0291 (8)
C20.1792 (3)0.2598 (6)0.1780 (3)0.0372 (10)
H2A0.16600.36570.21790.045*
H2B0.14800.30270.10690.045*
C10.2191 (3)−0.0747 (6)0.2493 (3)0.0329 (9)
C100.0120 (3)−0.1790 (7)0.1662 (3)0.0398 (10)
H100.0552−0.28280.20720.048*
C8−0.1500 (3)−0.0645 (7)0.0639 (3)0.0422 (10)
H8−0.2169−0.08910.03490.051*
C7−0.1148 (3)0.1186 (7)0.0473 (3)0.0375 (9)
C9−0.0854 (3)−0.2119 (7)0.1239 (3)0.0459 (11)
H9−0.1085−0.33940.13640.055*
C30.2862 (3)0.2309 (7)0.2163 (3)0.0410 (10)
H3A0.32160.35680.25220.049*
H3B0.30120.20180.16050.049*
N2A0.4287 (2)−0.0308 (5)0.5862 (2)0.0359 (8)
H2AA0.4517−0.13290.62990.043*
H2AB0.43310.09860.60700.043*
N10.1455 (2)0.0527 (5)0.1902 (2)0.0301 (7)
N3A0.3800 (2)−0.2598 (5)0.4563 (3)0.0387 (8)
H3AA0.4023−0.36500.49820.046*
H3AB0.3523−0.28250.39140.046*
U11U22U33U12U13U23
Br10.0583 (3)0.0267 (2)0.0360 (2)−0.00529 (19)0.0203 (2)−0.00053 (19)
S10.0371 (5)0.0258 (5)0.0328 (5)0.0008 (4)0.0109 (4)−0.0016 (4)
Cl10.0390 (6)0.0562 (7)0.0584 (7)0.0075 (5)0.0172 (5)0.0116 (6)
O10.0468 (17)0.0269 (16)0.0439 (18)−0.0033 (13)0.0059 (13)0.0010 (13)
C50.032 (2)0.030 (2)0.027 (2)−0.0057 (15)0.0133 (16)−0.0075 (16)
C60.036 (2)0.030 (2)0.034 (2)−0.0026 (17)0.0161 (17)0.0017 (17)
C40.034 (2)0.037 (2)0.032 (2)−0.0007 (18)0.0144 (17)0.0001 (19)
C110.0234 (18)0.025 (2)0.039 (2)−0.0001 (15)0.0141 (16)−0.0007 (17)
C20.037 (2)0.030 (2)0.040 (2)−0.0071 (17)0.0141 (18)0.0067 (18)
C10.038 (2)0.030 (2)0.027 (2)0.0000 (17)0.0123 (17)−0.0043 (17)
C100.040 (2)0.036 (2)0.038 (2)−0.0058 (18)0.0143 (19)0.0043 (19)
C80.035 (2)0.056 (3)0.034 (2)−0.014 (2)0.0140 (18)−0.002 (2)
C70.038 (2)0.043 (2)0.033 (2)0.0007 (19)0.0176 (18)−0.0003 (19)
C90.048 (2)0.041 (3)0.047 (3)−0.015 (2)0.020 (2)0.004 (2)
C30.038 (2)0.048 (3)0.038 (2)−0.0066 (19)0.0177 (19)0.007 (2)
N2A0.0434 (19)0.0261 (16)0.0307 (19)−0.0003 (15)0.0104 (15)−0.0017 (15)
N10.0291 (16)0.0265 (16)0.0319 (18)−0.0045 (14)0.0116 (14)−0.0010 (14)
N3A0.049 (2)0.0262 (18)0.0327 (19)0.0049 (15)0.0117 (16)−0.0026 (15)
S1—C111.749 (4)C2—H2A0.9900
S1—C41.822 (4)C2—H2B0.9900
Cl1—C71.737 (4)C1—N11.363 (5)
O1—C11.228 (4)C10—C91.379 (6)
C5—C61.389 (5)C10—H100.9500
C5—C101.392 (5)C8—C71.371 (6)
C5—N11.418 (4)C8—C91.380 (6)
C6—C71.374 (5)C8—H80.9500
C6—H60.9500C9—H90.9500
C4—C11.514 (5)C3—H3A0.9900
C4—C31.523 (5)C3—H3B0.9900
C4—H41.0000N2A—H2AA0.8800
C11—N3A1.296 (5)N2A—H2AB0.8800
C11—N2A1.312 (5)N3A—H3AA0.8800
C2—N11.475 (5)N3A—H3AB0.8800
C2—C31.520 (5)
C11—S1—C4104.56 (18)C9—C10—H10120.3
C6—C5—C10119.1 (3)C5—C10—H10120.3
C6—C5—N1118.5 (3)C7—C8—C9118.0 (4)
C10—C5—N1122.4 (3)C7—C8—H8121.0
C7—C6—C5119.9 (4)C9—C8—H8121.0
C7—C6—H6120.1C8—C7—C6121.9 (4)
C5—C6—H6120.1C8—C7—Cl1119.1 (3)
C1—C4—C3103.7 (3)C6—C7—Cl1119.0 (3)
C1—C4—S1109.9 (3)C10—C9—C8121.8 (4)
C3—C4—S1107.6 (3)C10—C9—H9119.1
C1—C4—H4111.8C8—C9—H9119.1
C3—C4—H4111.8C2—C3—C4104.7 (3)
S1—C4—H4111.8C2—C3—H3A110.8
N3A—C11—N2A122.0 (4)C4—C3—H3A110.8
N3A—C11—S1122.9 (3)C2—C3—H3B110.8
N2A—C11—S1115.1 (3)C4—C3—H3B110.8
N1—C2—C3104.0 (3)H3A—C3—H3B108.9
N1—C2—H2A111.0C11—N2A—H2AA120.0
C3—C2—H2A111.0C11—N2A—H2AB120.0
N1—C2—H2B111.0H2AA—N2A—H2AB120.0
C3—C2—H2B111.0C1—N1—C5126.8 (3)
H2A—C2—H2B109.0C1—N1—C2112.1 (3)
O1—C1—N1126.5 (4)C5—N1—C2120.9 (3)
O1—C1—C4124.6 (4)C11—N3A—H3AA120.0
N1—C1—C4108.8 (3)C11—N3A—H3AB120.0
C9—C10—C5119.4 (4)H3AA—N3A—H3AB120.0
D—H···AD—HH···AD···AD—H···A
N2A—H2AB···Br10.882.433.290 (3)166
N2A—H2AA···Br1i0.882.683.452 (3)147
N2A—H2AA···Br1ii0.882.913.426 (3)119
N3A—H3AA···Br1i0.882.443.273 (3)158
N3A—H3AB···O10.882.122.823 (4)137
C2—H2A···O1iii0.992.573.352 (5)137
C3—H3B···Br1iv0.993.013.737 (4)131
C10—H10···O10.952.222.852 (5)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2A—H2AB⋯Br10.882.433.290 (3)166
N2A—H2AA⋯Br1i0.882.683.452 (3)147
N2A—H2AA⋯Br1ii0.882.913.426 (3)119
N3A—H3AA⋯Br1i0.882.443.273 (3)158
N3A—H3AB⋯O10.882.122.823 (4)137
C2—H2A⋯O1iii0.992.573.352 (5)137
C3—H3B⋯Br1iv0.993.013.737 (4)131
C10—H10⋯O10.952.222.852 (5)124

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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4.  Influence of substitution on kinetics and mechanism of ring transformation of substituted S-[1-phenylpyrrolidin-2-on-3-yl]isothiuronium salts.

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5.  Kinetics and mechanism of ring transformation of S-[1-(4-methoxyphenyl)pyrrolidin-2-on-3-yl]isothiuronium bromide to 2-methylimino-5-[2-(4-methoxyphenylamino)ethyl]thiazolidin-4-one.

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6.  (3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-rolidin-3-yl]-N,N'-dimethyl-thio-uronium bromide.

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  6 in total
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1.  (3RS)-S-[1-(3-Chloro-phen-yl)-2-oxopyr-rolidin-3-yl]-N,N'-dimethyl-thio-uronium bromide.

Authors:  Jiří Hanusek; Miloš Sedlák; Pavel Drabina; Aleš Ružička
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28
  1 in total

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