| Literature DB >> 21582003 |
Jiří Hanusek, Miloš Sedlák, Pavel Drabina, Aleš Ružička.
Abstract
In the title molecular salt, C(11)H(13)ClN(3)OS(+)·Br(-), the C-N bond lengths in the -S-C(NH(2))(2) fragment indicate partial double-bond character of these bonds. The constituent ions are connected by N-H⋯Br bridges into Z-shaped chains. The supra-molecular architecture of the structure can be described by being composed of these chains inter-locked by additional C-H⋯Br short contacts. An intra-molecular N-H⋯O=C bridge, as well as weak C-H⋯O hydrogen bonds, are also present in the structure.Entities:
Year: 2009 PMID: 21582003 PMCID: PMC2968325 DOI: 10.1107/S1600536809001603
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13ClN3OS+·Br− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 15779 reflections |
| θ = 1–27.5° | |
| µ = 3.38 mm−1 | |
| β = 117.329 (5)° | Plate, colourless |
| 0.29 × 0.12 × 0.03 mm | |
| Bruker–Nonius KappaCCD diffractometer | 3095 independent reflections |
| Radiation source: fine-focus sealed tube | 2214 reflections with |
| graphite | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
| φ and ω scans | |
| Absorption correction: gaussian (Coppens, 1970) | |
| 15769 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3095 reflections | Δρmax = 0.48 e Å−3 |
| 164 parameters | Δρmin = −0.47 e Å−3 |
| 0 restraints | Extinction correction: |
| 52 constraints | Extinction coefficient: 0.0036 (5) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.48049 (3) | 0.45589 (6) | 0.65892 (3) | 0.04086 (16) | |
| S1 | 0.34553 (7) | 0.14593 (15) | 0.41198 (8) | 0.0339 (2) | |
| Cl1 | −0.19436 (7) | 0.30572 (19) | −0.02926 (9) | 0.0532 (3) | |
| O1 | 0.21265 (19) | −0.2562 (4) | 0.2711 (2) | 0.0450 (7) | |
| C5 | 0.0464 (3) | 0.0076 (6) | 0.1482 (3) | 0.0295 (8) | |
| C6 | −0.0184 (3) | 0.1577 (6) | 0.0890 (3) | 0.0330 (9) | |
| H6 | 0.0040 | 0.2871 | 0.0774 | 0.040* | |
| C4 | 0.3119 (3) | 0.0455 (6) | 0.2870 (3) | 0.0346 (9) | |
| H4 | 0.3640 | −0.0404 | 0.2852 | 0.042* | |
| C11 | 0.3880 (2) | −0.0716 (6) | 0.4901 (3) | 0.0291 (8) | |
| C2 | 0.1792 (3) | 0.2598 (6) | 0.1780 (3) | 0.0372 (10) | |
| H2A | 0.1660 | 0.3657 | 0.2179 | 0.045* | |
| H2B | 0.1480 | 0.3027 | 0.1069 | 0.045* | |
| C1 | 0.2191 (3) | −0.0747 (6) | 0.2493 (3) | 0.0329 (9) | |
| C10 | 0.0120 (3) | −0.1790 (7) | 0.1662 (3) | 0.0398 (10) | |
| H10 | 0.0552 | −0.2828 | 0.2072 | 0.048* | |
| C8 | −0.1500 (3) | −0.0645 (7) | 0.0639 (3) | 0.0422 (10) | |
| H8 | −0.2169 | −0.0891 | 0.0349 | 0.051* | |
| C7 | −0.1148 (3) | 0.1186 (7) | 0.0473 (3) | 0.0375 (9) | |
| C9 | −0.0854 (3) | −0.2119 (7) | 0.1239 (3) | 0.0459 (11) | |
| H9 | −0.1085 | −0.3394 | 0.1364 | 0.055* | |
| C3 | 0.2862 (3) | 0.2309 (7) | 0.2163 (3) | 0.0410 (10) | |
| H3A | 0.3216 | 0.3568 | 0.2522 | 0.049* | |
| H3B | 0.3012 | 0.2018 | 0.1605 | 0.049* | |
| N2A | 0.4287 (2) | −0.0308 (5) | 0.5862 (2) | 0.0359 (8) | |
| H2AA | 0.4517 | −0.1329 | 0.6299 | 0.043* | |
| H2AB | 0.4331 | 0.0986 | 0.6070 | 0.043* | |
| N1 | 0.1455 (2) | 0.0527 (5) | 0.1902 (2) | 0.0301 (7) | |
| N3A | 0.3800 (2) | −0.2598 (5) | 0.4563 (3) | 0.0387 (8) | |
| H3AA | 0.4023 | −0.3650 | 0.4982 | 0.046* | |
| H3AB | 0.3523 | −0.2825 | 0.3914 | 0.046* |
| Br1 | 0.0583 (3) | 0.0267 (2) | 0.0360 (2) | −0.00529 (19) | 0.0203 (2) | −0.00053 (19) |
| S1 | 0.0371 (5) | 0.0258 (5) | 0.0328 (5) | 0.0008 (4) | 0.0109 (4) | −0.0016 (4) |
| Cl1 | 0.0390 (6) | 0.0562 (7) | 0.0584 (7) | 0.0075 (5) | 0.0172 (5) | 0.0116 (6) |
| O1 | 0.0468 (17) | 0.0269 (16) | 0.0439 (18) | −0.0033 (13) | 0.0059 (13) | 0.0010 (13) |
| C5 | 0.032 (2) | 0.030 (2) | 0.027 (2) | −0.0057 (15) | 0.0133 (16) | −0.0075 (16) |
| C6 | 0.036 (2) | 0.030 (2) | 0.034 (2) | −0.0026 (17) | 0.0161 (17) | 0.0017 (17) |
| C4 | 0.034 (2) | 0.037 (2) | 0.032 (2) | −0.0007 (18) | 0.0144 (17) | 0.0001 (19) |
| C11 | 0.0234 (18) | 0.025 (2) | 0.039 (2) | −0.0001 (15) | 0.0141 (16) | −0.0007 (17) |
| C2 | 0.037 (2) | 0.030 (2) | 0.040 (2) | −0.0071 (17) | 0.0141 (18) | 0.0067 (18) |
| C1 | 0.038 (2) | 0.030 (2) | 0.027 (2) | 0.0000 (17) | 0.0123 (17) | −0.0043 (17) |
| C10 | 0.040 (2) | 0.036 (2) | 0.038 (2) | −0.0058 (18) | 0.0143 (19) | 0.0043 (19) |
| C8 | 0.035 (2) | 0.056 (3) | 0.034 (2) | −0.014 (2) | 0.0140 (18) | −0.002 (2) |
| C7 | 0.038 (2) | 0.043 (2) | 0.033 (2) | 0.0007 (19) | 0.0176 (18) | −0.0003 (19) |
| C9 | 0.048 (2) | 0.041 (3) | 0.047 (3) | −0.015 (2) | 0.020 (2) | 0.004 (2) |
| C3 | 0.038 (2) | 0.048 (3) | 0.038 (2) | −0.0066 (19) | 0.0177 (19) | 0.007 (2) |
| N2A | 0.0434 (19) | 0.0261 (16) | 0.0307 (19) | −0.0003 (15) | 0.0104 (15) | −0.0017 (15) |
| N1 | 0.0291 (16) | 0.0265 (16) | 0.0319 (18) | −0.0045 (14) | 0.0116 (14) | −0.0010 (14) |
| N3A | 0.049 (2) | 0.0262 (18) | 0.0327 (19) | 0.0049 (15) | 0.0117 (16) | −0.0026 (15) |
| S1—C11 | 1.749 (4) | C2—H2A | 0.9900 |
| S1—C4 | 1.822 (4) | C2—H2B | 0.9900 |
| Cl1—C7 | 1.737 (4) | C1—N1 | 1.363 (5) |
| O1—C1 | 1.228 (4) | C10—C9 | 1.379 (6) |
| C5—C6 | 1.389 (5) | C10—H10 | 0.9500 |
| C5—C10 | 1.392 (5) | C8—C7 | 1.371 (6) |
| C5—N1 | 1.418 (4) | C8—C9 | 1.380 (6) |
| C6—C7 | 1.374 (5) | C8—H8 | 0.9500 |
| C6—H6 | 0.9500 | C9—H9 | 0.9500 |
| C4—C1 | 1.514 (5) | C3—H3A | 0.9900 |
| C4—C3 | 1.523 (5) | C3—H3B | 0.9900 |
| C4—H4 | 1.0000 | N2A—H2AA | 0.8800 |
| C11—N3A | 1.296 (5) | N2A—H2AB | 0.8800 |
| C11—N2A | 1.312 (5) | N3A—H3AA | 0.8800 |
| C2—N1 | 1.475 (5) | N3A—H3AB | 0.8800 |
| C2—C3 | 1.520 (5) | ||
| C11—S1—C4 | 104.56 (18) | C9—C10—H10 | 120.3 |
| C6—C5—C10 | 119.1 (3) | C5—C10—H10 | 120.3 |
| C6—C5—N1 | 118.5 (3) | C7—C8—C9 | 118.0 (4) |
| C10—C5—N1 | 122.4 (3) | C7—C8—H8 | 121.0 |
| C7—C6—C5 | 119.9 (4) | C9—C8—H8 | 121.0 |
| C7—C6—H6 | 120.1 | C8—C7—C6 | 121.9 (4) |
| C5—C6—H6 | 120.1 | C8—C7—Cl1 | 119.1 (3) |
| C1—C4—C3 | 103.7 (3) | C6—C7—Cl1 | 119.0 (3) |
| C1—C4—S1 | 109.9 (3) | C10—C9—C8 | 121.8 (4) |
| C3—C4—S1 | 107.6 (3) | C10—C9—H9 | 119.1 |
| C1—C4—H4 | 111.8 | C8—C9—H9 | 119.1 |
| C3—C4—H4 | 111.8 | C2—C3—C4 | 104.7 (3) |
| S1—C4—H4 | 111.8 | C2—C3—H3A | 110.8 |
| N3A—C11—N2A | 122.0 (4) | C4—C3—H3A | 110.8 |
| N3A—C11—S1 | 122.9 (3) | C2—C3—H3B | 110.8 |
| N2A—C11—S1 | 115.1 (3) | C4—C3—H3B | 110.8 |
| N1—C2—C3 | 104.0 (3) | H3A—C3—H3B | 108.9 |
| N1—C2—H2A | 111.0 | C11—N2A—H2AA | 120.0 |
| C3—C2—H2A | 111.0 | C11—N2A—H2AB | 120.0 |
| N1—C2—H2B | 111.0 | H2AA—N2A—H2AB | 120.0 |
| C3—C2—H2B | 111.0 | C1—N1—C5 | 126.8 (3) |
| H2A—C2—H2B | 109.0 | C1—N1—C2 | 112.1 (3) |
| O1—C1—N1 | 126.5 (4) | C5—N1—C2 | 120.9 (3) |
| O1—C1—C4 | 124.6 (4) | C11—N3A—H3AA | 120.0 |
| N1—C1—C4 | 108.8 (3) | C11—N3A—H3AB | 120.0 |
| C9—C10—C5 | 119.4 (4) | H3AA—N3A—H3AB | 120.0 |
| H··· | ||||
| N2A—H2AB···Br1 | 0.88 | 2.43 | 3.290 (3) | 166 |
| N2A—H2AA···Br1i | 0.88 | 2.68 | 3.452 (3) | 147 |
| N2A—H2AA···Br1ii | 0.88 | 2.91 | 3.426 (3) | 119 |
| N3A—H3AA···Br1i | 0.88 | 2.44 | 3.273 (3) | 158 |
| N3A—H3AB···O1 | 0.88 | 2.12 | 2.823 (4) | 137 |
| C2—H2A···O1iii | 0.99 | 2.57 | 3.352 (5) | 137 |
| C3—H3B···Br1iv | 0.99 | 3.01 | 3.737 (4) | 131 |
| C10—H10···O1 | 0.95 | 2.22 | 2.852 (5) | 124 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2 | 0.88 | 2.43 | 3.290 (3) | 166 |
| N2 | 0.88 | 2.68 | 3.452 (3) | 147 |
| N2 | 0.88 | 2.91 | 3.426 (3) | 119 |
| N3 | 0.88 | 2.44 | 3.273 (3) | 158 |
| N3 | 0.88 | 2.12 | 2.823 (4) | 137 |
| C2—H2 | 0.99 | 2.57 | 3.352 (5) | 137 |
| C3—H3 | 0.99 | 3.01 | 3.737 (4) | 131 |
| C10—H10⋯O1 | 0.95 | 2.22 | 2.852 (5) | 124 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .