Literature DB >> 21582000

3-(1,3-Dioxolan-2-yl)-2-hydrazino-7-methyl-quinoline.

R Subashini, Venkatesha R Hathwar, P Nithya, K Prabakaran, F Nawaz Khan.   

Abstract

In the title mol-ecule, C(13)H(15)N(3)O(2), the dihedral angle between the mean plane of the 1,3-dioxolane group and the 2-hydrazino-7-methyl-isoquinoline unit is 85.21 (5)°. The conformation of the mol-ecule is influenced by bifurcated N-H⋯(O,O) and N-H⋯N intra-molecular hydrogen bonds. In the crystal structure, mol-ecules are linked via inter-molecular N-H⋯O hydrogen bonds, forming extended chains along [001].

Entities:  

Year:  2009        PMID: 21582000      PMCID: PMC2968224          DOI: 10.1107/S1600536809003031

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to hydrazine compounds, see: Broadhurst et al. (2001 ▶); Behrens (1999 ▶); Broadhurst (1991 ▶); Chao et al. (1999 ▶); Kametani (1968 ▶). For related crystal structures, see: Yang et al. (2008 ▶); Choudhury & Guru Row (2006 ▶); Choudhury et al. (2002 ▶); Hathwar et al. (2008 ▶); Cho et al. (2002 ▶); Manivel et al. (2009 ▶), and references therein. For bond-length data, see: Allen et al., 1987 ▶)

Experimental

Crystal data

C13H15N3O2 M = 245.28 Monoclinic, a = 13.1909 (17) Å b = 10.1165 (13) Å c = 9.7805 (13) Å β = 109.956 (2)° V = 1226.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 290 (2) K 0.30 × 0.21 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.942, T max = 0.987 8929 measured reflections 2279 independent reflections 1699 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.129 S = 1.06 2279 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003031/lh2748sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003031/lh2748Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15N3O2F(000) = 520
Mr = 245.28Dx = 1.328 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 948 reflections
a = 13.1909 (17) Åθ = 1.8–24.6°
b = 10.1165 (13) ŵ = 0.09 mm1
c = 9.7805 (13) ÅT = 290 K
β = 109.956 (2)°Block, brown
V = 1226.8 (3) Å30.30 × 0.21 × 0.14 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2279 independent reflections
Radiation source: fine-focus sealed tube1699 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 25.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.942, Tmax = 0.987k = −10→12
8929 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.072P)2 + 0.1104P] where P = (Fo2 + 2Fc2)/3
2279 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.10652 (9)0.42297 (12)−0.28334 (11)0.0621 (4)
O20.09919 (10)0.22186 (13)−0.18872 (12)0.0701 (4)
N10.32415 (10)0.45872 (13)0.15262 (13)0.0524 (4)
N20.14264 (11)0.45599 (16)0.02767 (15)0.0597 (4)
N30.12501 (13)0.53613 (19)0.13548 (18)0.0664 (4)
C10.24495 (12)0.42351 (15)0.03448 (15)0.0464 (4)
C20.26133 (12)0.35152 (15)−0.08326 (15)0.0480 (4)
C30.36404 (13)0.31857 (15)−0.06896 (17)0.0550 (4)
H3A0.37720.2726−0.14350.066*
C40.56033 (15)0.32091 (18)0.0793 (2)0.0688 (5)
H4A0.57780.27500.00800.083*
C50.64009 (14)0.35734 (19)0.2051 (2)0.0732 (6)
H5A0.71110.33440.21860.088*
C60.61719 (14)0.4286 (2)0.3145 (2)0.0662 (5)
C70.51244 (13)0.46184 (19)0.29207 (17)0.0615 (5)
H7A0.49660.51070.36280.074*
C80.42773 (12)0.42464 (15)0.16556 (16)0.0496 (4)
C90.45173 (12)0.35270 (15)0.05728 (17)0.0533 (4)
C100.70689 (16)0.4661 (3)0.4525 (2)0.0949 (8)
H10A0.67670.49360.52440.142*
H10B0.74810.53720.43290.142*
H10C0.75300.39110.48820.142*
C110.17109 (13)0.31376 (16)−0.21833 (17)0.0540 (4)
H11A0.20100.2745−0.28790.065*
C12−0.00343 (14)0.2421 (2)−0.2979 (2)0.0782 (6)
H12A−0.05880.2540−0.25440.094*
H12B−0.02280.1675−0.36400.094*
C130.00918 (15)0.3653 (2)−0.37670 (19)0.0764 (6)
H13A0.01460.3440−0.47060.092*
H13B−0.05130.4247−0.39100.092*
H2N0.0904 (15)0.4447 (17)−0.050 (2)0.064 (5)*
H3NB0.1453 (18)0.484 (2)0.218 (2)0.095 (7)*
H3NA0.1821 (17)0.597 (2)0.158 (2)0.078 (6)*
U11U22U33U12U13U23
O10.0577 (7)0.0724 (8)0.0494 (6)0.0026 (6)0.0095 (5)0.0034 (5)
O20.0667 (8)0.0722 (8)0.0642 (7)−0.0201 (6)0.0130 (6)−0.0040 (6)
N10.0475 (8)0.0647 (9)0.0438 (7)−0.0047 (6)0.0141 (6)−0.0015 (6)
N20.0476 (8)0.0838 (11)0.0443 (7)0.0051 (7)0.0114 (6)−0.0113 (7)
N30.0626 (10)0.0782 (11)0.0586 (9)0.0087 (9)0.0211 (7)−0.0131 (9)
C10.0467 (8)0.0495 (9)0.0426 (8)0.0001 (7)0.0145 (7)0.0037 (6)
C20.0497 (9)0.0465 (8)0.0470 (8)0.0006 (7)0.0153 (7)0.0012 (6)
C30.0580 (10)0.0492 (9)0.0589 (9)0.0019 (7)0.0214 (8)−0.0077 (7)
C40.0566 (10)0.0607 (11)0.0890 (13)0.0055 (8)0.0245 (9)−0.0053 (10)
C50.0424 (9)0.0707 (12)0.0974 (14)0.0022 (8)0.0122 (9)0.0105 (11)
C60.0518 (10)0.0774 (13)0.0628 (11)−0.0136 (9)0.0108 (8)0.0122 (9)
C70.0526 (10)0.0785 (12)0.0512 (9)−0.0134 (8)0.0148 (8)0.0024 (8)
C80.0480 (9)0.0526 (9)0.0470 (8)−0.0057 (7)0.0147 (7)0.0065 (7)
C90.0474 (9)0.0470 (9)0.0629 (10)0.0001 (7)0.0156 (7)0.0035 (7)
C100.0550 (11)0.138 (2)0.0771 (13)−0.0265 (12)0.0040 (10)0.0078 (13)
C110.0531 (9)0.0597 (10)0.0492 (9)−0.0007 (7)0.0175 (7)−0.0083 (7)
C120.0554 (11)0.0901 (15)0.0852 (13)−0.0112 (10)0.0188 (10)−0.0274 (12)
C130.0565 (11)0.1135 (17)0.0500 (9)0.0012 (11)0.0065 (8)−0.0119 (11)
O1—C111.4074 (19)C4—H4A0.9300
O1—C131.422 (2)C5—C61.406 (3)
O2—C121.424 (2)C5—H5A0.9300
O2—C111.427 (2)C6—C71.365 (3)
N1—C11.3151 (18)C6—C101.509 (2)
N1—C81.372 (2)C7—C81.406 (2)
N2—C11.3683 (19)C7—H7A0.9300
N2—N31.411 (2)C8—C91.407 (2)
N2—H2N0.843 (19)C10—H10A0.9600
N3—H3NB0.92 (2)C10—H10B0.9600
N3—H3NA0.94 (2)C10—H10C0.9600
C1—C21.440 (2)C11—H11A0.9800
C2—C31.355 (2)C12—C131.504 (3)
C2—C111.495 (2)C12—H12A0.9700
C3—C91.417 (2)C12—H12B0.9700
C3—H3A0.9300C13—H13A0.9700
C4—C51.368 (3)C13—H13B0.9700
C4—C91.411 (2)
C11—O1—C13104.05 (14)N1—C8—C7118.75 (15)
C12—O2—C11106.35 (14)N1—C8—C9122.22 (14)
C1—N1—C8118.70 (13)C7—C8—C9119.03 (15)
C1—N2—N3120.87 (13)C8—C9—C4118.70 (15)
C1—N2—H2N120.1 (12)C8—C9—C3117.09 (14)
N3—N2—H2N117.4 (12)C4—C9—C3124.20 (16)
N2—N3—H3NB104.8 (14)C6—C10—H10A109.5
N2—N3—H3NA102.9 (12)C6—C10—H10B109.5
H3NB—N3—H3NA101.6 (18)H10A—C10—H10B109.5
N1—C1—N2116.89 (14)C6—C10—H10C109.5
N1—C1—C2123.28 (14)H10A—C10—H10C109.5
N2—C1—C2119.82 (13)H10B—C10—H10C109.5
C3—C2—C1117.35 (13)O1—C11—O2105.16 (13)
C3—C2—C11119.66 (14)O1—C11—C2112.04 (13)
C1—C2—C11122.99 (13)O2—C11—C2111.79 (13)
C2—C3—C9121.34 (15)O1—C11—H11A109.2
C2—C3—H3A119.3O2—C11—H11A109.2
C9—C3—H3A119.3C2—C11—H11A109.2
C5—C4—C9120.33 (18)O2—C12—C13105.10 (14)
C5—C4—H4A119.8O2—C12—H12A110.7
C9—C4—H4A119.8C13—C12—H12A110.7
C4—C5—C6121.55 (17)O2—C12—H12B110.7
C4—C5—H5A119.2C13—C12—H12B110.7
C6—C5—H5A119.2H12A—C12—H12B108.8
C7—C6—C5118.21 (16)O1—C13—C12104.14 (14)
C7—C6—C10121.57 (19)O1—C13—H13A110.9
C5—C6—C10120.22 (17)C12—C13—H13A110.9
C6—C7—C8122.15 (17)O1—C13—H13B110.9
C6—C7—H7A118.9C12—C13—H13B110.9
C8—C7—H7A118.9H13A—C13—H13B108.9
D—H···AD—HH···AD···AD—H···A
N2—H2N···O10.843 (19)2.372 (18)2.9329 (17)124.5 (15)
N2—H2N···O20.843 (19)2.653 (18)3.0968 (19)114.3 (14)
N3—H3NA···N10.94 (2)2.35 (2)2.691 (2)100.9 (15)
N3—H3NB···O2i0.92 (2)2.44 (2)3.207 (2)141.2 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O10.843 (19)2.372 (18)2.9329 (17)124.5 (15)
N2—H2N⋯O20.843 (19)2.653 (18)3.0968 (19)114.3 (14)
N3—H3NA⋯N10.94 (2)2.35 (2)2.691 (2)100.9 (15)
N3—H3NB⋯O2i0.92 (2)2.44 (2)3.207 (2)141.2 (19)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Substituted isoquinolines and quinazolines as potential antiinflammatory agents. Synthesis and biological evaluation of inhibitors of tumor necrosis factor alpha.

Authors:  Q Chao; L Deng; H Shih; L M Leoni; D Genini; D A Carson; H B Cottam
Journal:  J Med Chem       Date:  1999-09-23       Impact factor: 7.446

3.  3-Phenyl-1-[2-(3-phenyl-isoquinolin-1-yl)-diselan-yl]isoquinoline.

Authors:  Venkatesha R Hathwar; K Prabakaran; R Subashini; P Manivel; F Nawaz Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

4.  Molecular modeling of 3-arylisoquinoline antitumor agents active against A-549. A comparative molecular field analysis study.

Authors:  Won-Jea Cho; Eui-Ki Kim; Il Yeong Park; Eun Young Jeong; Tae Sung Kim; Thanh Nguyen Le; Dae-Duk Kim; Eung-Seok Lee
Journal:  Bioorg Med Chem       Date:  2002-09       Impact factor: 3.641

5.  1-(3-Phenyl-isoquinolin-1-yl)hydrazine.

Authors:  P Manivel; Venkatesha R Hathwar; P Nithya; K Prabakaran; F Nawaz Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17
  5 in total

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