Literature DB >> 21581991

rac-(4R,17S,18R,26R)-Ethyl 4'-methoxy-carbonyl-5''-(4-methoxy-phen-yl)-1'-methyl-2,3''-dioxo-2'',3''-dihydro-indoline-3-spiro-2'-pyrrolidine-3'-spiro-2''-thia-zolo[3,2-a]pyrimidine-6''-carboxyl-ate.

Zhao-Hui Hou, Ning-Bo Zhou, Bin-Hong He, Xiao-Fang Li.   

Abstract

In the title compound, C(30)H(30)N(4)O(7)S, the two spiro junctions link a planar 2-oxindole ring [with a mean deviation from the plane of 0.0319 (3) Å, a pyrrolidine ring in an envelope conformation and a thia-zolo[3,2-a]pyrimidine system. Two mol-ecules are connected into a dimer by two N-H⋯O hydrogen bonds, forming an R(2) (2)(8) graph-set motif. The title compound has four stereogenic centers and appears as a racemic mixture of one single diastereoisomer (RSRR/SRSS).

Entities:  

Year:  2009        PMID: 21581991      PMCID: PMC2968168          DOI: 10.1107/S160053680900261X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on spiro compounds, see: Caramella & Grunanger (1984 ▶); James et al. (1991 ▶); Kobayashi et al. (1991 ▶). For structural discussion, see: Cremer & Pople (1975 ▶); Etter (1990 ▶); Bernstein et al. (1994 ▶).

Experimental

Crystal data

C30H30N4O7S M = 590.64 Triclinic, a = 9.944 (2) Å b = 11.389 (2) Å c = 13.417 (3) Å α = 98.06 (3)° β = 107.36 (3)° γ = 101.00 (3)° V = 1391.8 (6) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 113 (2) K 0.20 × 0.18 × 0.08 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2001 ▶) T min = 0.956, T max = 0.977 10220 measured reflections 4881 independent reflections 3700 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.06 4881 reflections 384 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680900261X/dn2427sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900261X/dn2427Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C30H30N4O7SZ = 2
Mr = 590.64F(000) = 620
Triclinic, P1Dx = 1.409 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.944 (2) ÅCell parameters from 4258 reflections
b = 11.389 (2) Åθ = 1.8–27.9°
c = 13.417 (3) ŵ = 0.17 mm1
α = 98.06 (3)°T = 113 K
β = 107.36 (3)°Block, colourless
γ = 101.00 (3)°0.20 × 0.18 × 0.08 mm
V = 1391.8 (6) Å3
Rigaku Saturn diffractometer4881 independent reflections
Radiation source: rotating anode3700 reflections with I > 2σ(I)
confocalRint = 0.029
ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2001)h = −11→11
Tmin = 0.956, Tmax = 0.977k = −13→10
10220 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0589P)2] where P = (Fo2 + 2Fc2)/3
4881 reflections(Δ/σ)max < 0.001
384 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.04156 (5)0.35302 (4)0.42322 (3)0.02231 (13)
O10.32486 (14)−0.13252 (12)0.32935 (11)0.0354 (3)
O20.26663 (13)−0.05624 (11)0.18117 (10)0.0281 (3)
O3−0.42217 (12)−0.30677 (11)0.05644 (10)0.0316 (3)
O4−0.02319 (12)0.24227 (10)0.12268 (9)0.0236 (3)
O5−0.11369 (12)0.48453 (10)0.08582 (8)0.0218 (3)
O6−0.27264 (14)0.17208 (12)0.27772 (13)0.0429 (4)
O7−0.39268 (13)0.31585 (11)0.30007 (10)0.0328 (3)
N10.16597 (15)0.16869 (13)0.46129 (11)0.0241 (3)
N20.07144 (14)0.18849 (12)0.28126 (10)0.0174 (3)
N30.13510 (14)0.52812 (12)0.12989 (11)0.0208 (3)
H30.14060.53090.06740.025*
N4−0.02410 (14)0.56993 (12)0.32782 (10)0.0182 (3)
C10.3131 (2)0.02959 (19)0.51724 (15)0.0344 (5)
H1A0.3593−0.02880.49130.052*
H1B0.2512−0.00830.55260.052*
H1C0.38580.09780.56670.052*
C20.22450 (18)0.07314 (16)0.42587 (14)0.0229 (4)
C30.20286 (17)0.03199 (15)0.32123 (14)0.0213 (4)
C40.09652 (17)0.07312 (14)0.23379 (13)0.0189 (4)
H40.14030.08860.17900.023*
C50.10029 (17)0.22161 (15)0.39038 (13)0.0199 (4)
C60.27164 (17)−0.06142 (16)0.28186 (15)0.0239 (4)
C70.3202 (2)−0.14574 (17)0.12533 (16)0.0364 (5)
H7A0.2439−0.22010.09130.044*
H7B0.4011−0.16600.17520.044*
C80.3682 (2)−0.09030 (19)0.04354 (17)0.0391 (5)
H8A0.2880−0.0685−0.00410.059*
H8B0.4014−0.14830.00370.059*
H8C0.4459−0.01840.07830.059*
C9−0.04382 (17)−0.02596 (14)0.18261 (13)0.0181 (4)
C10−0.07297 (18)−0.10076 (15)0.08378 (13)0.0212 (4)
H10−0.0079−0.08670.04680.025*
C11−0.19697 (18)−0.19597 (15)0.03911 (14)0.0250 (4)
H11−0.2141−0.2460−0.02670.030*
C12−0.29533 (17)−0.21597 (15)0.09342 (14)0.0232 (4)
C13−0.26702 (18)−0.14307 (16)0.19270 (14)0.0248 (4)
H13−0.3321−0.15740.22970.030*
C14−0.14238 (17)−0.04920 (15)0.23686 (13)0.0216 (4)
H14−0.1240−0.00090.30370.026*
C15−0.4605 (2)−0.3746 (2)−0.04918 (17)0.0525 (6)
H15A−0.4643−0.3196−0.09750.079*
H15B−0.5540−0.4305−0.06850.079*
H15C−0.3891−0.4195−0.05310.079*
C160.00520 (17)0.26045 (14)0.21851 (13)0.0182 (4)
C17−0.02451 (17)0.36688 (15)0.28420 (12)0.0179 (4)
C180.04721 (17)0.49640 (14)0.27189 (12)0.0177 (4)
C190.21177 (17)0.53663 (14)0.31052 (13)0.0190 (4)
C200.31437 (18)0.56616 (16)0.41158 (14)0.0244 (4)
H200.28640.55860.47110.029*
C210.46058 (18)0.60752 (16)0.42303 (15)0.0275 (4)
H210.53040.62640.49070.033*
C220.50340 (18)0.62089 (16)0.33501 (15)0.0262 (4)
H220.60160.64800.34430.031*
C230.40141 (17)0.59426 (15)0.23323 (14)0.0227 (4)
H230.42910.60390.17390.027*
C240.25706 (17)0.55281 (14)0.22340 (13)0.0194 (4)
C250.00866 (18)0.49965 (14)0.14971 (13)0.0187 (4)
C26−0.18551 (17)0.37201 (15)0.25039 (13)0.0197 (4)
H26−0.22050.35850.17230.024*
C27−0.17881 (17)0.50704 (15)0.29251 (13)0.0208 (4)
H27A−0.23520.54090.23640.025*
H27B−0.21610.51450.35160.025*
C280.00420 (19)0.69933 (15)0.32462 (14)0.0244 (4)
H28A0.10710.73490.35240.037*
H28B−0.04240.74010.36720.037*
H28C−0.03340.70830.25220.037*
C29−0.28448 (18)0.27477 (16)0.27959 (14)0.0257 (4)
C30−0.5040 (2)0.22464 (19)0.31518 (18)0.0452 (6)
H30A−0.54140.15750.25450.068*
H30B−0.58130.26040.32250.068*
H30C−0.46280.19560.37850.068*
U11U22U33U12U13U23
S10.0323 (3)0.0206 (2)0.0145 (2)0.00589 (18)0.00909 (19)0.00318 (18)
O10.0359 (8)0.0347 (8)0.0425 (8)0.0188 (6)0.0128 (7)0.0170 (7)
O20.0311 (7)0.0284 (7)0.0330 (7)0.0159 (6)0.0164 (6)0.0083 (6)
O30.0246 (7)0.0246 (7)0.0345 (7)−0.0027 (5)0.0041 (6)−0.0046 (6)
O40.0335 (7)0.0232 (6)0.0143 (6)0.0093 (5)0.0074 (5)0.0024 (5)
O50.0213 (6)0.0286 (7)0.0150 (6)0.0065 (5)0.0048 (5)0.0057 (5)
O60.0429 (8)0.0239 (7)0.0705 (11)0.0051 (6)0.0322 (8)0.0122 (7)
O70.0267 (7)0.0302 (7)0.0435 (8)−0.0003 (6)0.0213 (7)0.0026 (6)
N10.0255 (8)0.0268 (8)0.0190 (7)0.0050 (6)0.0058 (7)0.0065 (7)
N20.0198 (7)0.0160 (7)0.0159 (7)0.0036 (6)0.0062 (6)0.0025 (6)
N30.0227 (8)0.0270 (8)0.0153 (7)0.0064 (6)0.0090 (6)0.0064 (6)
N40.0219 (7)0.0164 (7)0.0177 (7)0.0047 (6)0.0094 (6)0.0019 (6)
C10.0336 (11)0.0395 (11)0.0282 (10)0.0130 (9)0.0036 (9)0.0103 (9)
C20.0182 (9)0.0241 (9)0.0269 (9)0.0038 (7)0.0070 (8)0.0108 (8)
C30.0148 (8)0.0214 (9)0.0276 (9)0.0025 (7)0.0066 (8)0.0091 (8)
C40.0197 (9)0.0181 (8)0.0197 (8)0.0055 (7)0.0083 (7)0.0019 (7)
C50.0212 (9)0.0204 (9)0.0164 (8)0.0005 (7)0.0066 (7)0.0043 (7)
C60.0141 (9)0.0219 (9)0.0326 (10)−0.0006 (7)0.0061 (8)0.0065 (8)
C70.0389 (12)0.0299 (10)0.0495 (13)0.0199 (9)0.0216 (11)0.0070 (10)
C80.0419 (12)0.0425 (12)0.0411 (12)0.0189 (10)0.0223 (11)0.0054 (10)
C90.0190 (9)0.0166 (8)0.0194 (8)0.0070 (7)0.0053 (7)0.0045 (7)
C100.0240 (9)0.0220 (9)0.0203 (8)0.0079 (7)0.0092 (8)0.0053 (7)
C110.0307 (10)0.0217 (9)0.0188 (9)0.0069 (8)0.0049 (8)−0.0011 (8)
C120.0183 (9)0.0182 (9)0.0275 (9)0.0042 (7)0.0014 (8)0.0012 (8)
C130.0218 (9)0.0248 (9)0.0295 (10)0.0056 (7)0.0130 (8)0.0012 (8)
C140.0224 (9)0.0192 (9)0.0208 (9)0.0042 (7)0.0072 (8)−0.0020 (7)
C150.0482 (14)0.0483 (14)0.0340 (12)−0.0169 (11)0.0018 (11)−0.0114 (11)
C160.0169 (8)0.0167 (8)0.0190 (9)0.0003 (7)0.0063 (7)0.0020 (7)
C170.0217 (9)0.0179 (8)0.0125 (8)0.0025 (7)0.0057 (7)0.0016 (7)
C180.0218 (9)0.0172 (8)0.0138 (8)0.0043 (7)0.0063 (7)0.0025 (7)
C190.0215 (9)0.0155 (8)0.0205 (9)0.0056 (7)0.0074 (8)0.0034 (7)
C200.0283 (10)0.0243 (9)0.0200 (9)0.0068 (8)0.0069 (8)0.0053 (8)
C210.0210 (9)0.0296 (10)0.0254 (9)0.0060 (8)−0.0005 (8)0.0031 (8)
C220.0181 (9)0.0233 (9)0.0364 (10)0.0067 (7)0.0083 (8)0.0037 (8)
C230.0231 (9)0.0210 (9)0.0261 (9)0.0065 (7)0.0117 (8)0.0025 (8)
C240.0232 (9)0.0163 (8)0.0189 (8)0.0063 (7)0.0069 (7)0.0027 (7)
C250.0258 (10)0.0146 (8)0.0165 (8)0.0046 (7)0.0088 (8)0.0025 (7)
C260.0198 (9)0.0202 (9)0.0185 (8)0.0029 (7)0.0075 (7)0.0019 (7)
C270.0230 (9)0.0222 (9)0.0186 (8)0.0062 (7)0.0091 (8)0.0032 (7)
C280.0300 (10)0.0185 (9)0.0255 (9)0.0059 (7)0.0106 (8)0.0048 (8)
C290.0270 (10)0.0255 (10)0.0241 (9)0.0035 (8)0.0114 (8)0.0012 (8)
C300.0389 (12)0.0398 (12)0.0564 (14)−0.0091 (10)0.0317 (12)−0.0001 (11)
S1—C51.7542 (17)C9—C141.393 (2)
S1—C171.8239 (17)C10—C111.386 (2)
O1—C61.204 (2)C10—H100.9300
O2—C61.347 (2)C11—C121.388 (2)
O2—C71.4547 (19)C11—H110.9300
O3—C121.375 (2)C12—C131.386 (2)
O3—C151.417 (2)C13—C141.382 (2)
O4—C161.2092 (19)C13—H130.9300
O5—C251.225 (2)C14—H140.9300
O6—C291.195 (2)C15—H15A0.9600
O7—C291.336 (2)C15—H15B0.9600
O7—C301.449 (2)C15—H15C0.9600
N1—C51.279 (2)C16—C171.525 (2)
N1—C21.418 (2)C17—C261.543 (2)
N2—C161.372 (2)C17—C181.565 (2)
N2—C51.386 (2)C18—C191.516 (2)
N2—C41.4763 (19)C18—C251.576 (2)
N3—C251.351 (2)C19—C201.381 (2)
N3—C241.410 (2)C19—C241.395 (2)
N3—H30.8600C20—C211.394 (2)
N4—C281.456 (2)C20—H200.9300
N4—C181.4613 (19)C21—C221.387 (2)
N4—C271.468 (2)C21—H210.9300
C1—C21.489 (3)C22—C231.387 (2)
C1—H1A0.9600C22—H220.9300
C1—H1B0.9600C23—C241.383 (2)
C1—H1C0.9600C23—H230.9300
C2—C31.354 (2)C26—C291.511 (2)
C3—C61.488 (2)C26—C271.544 (2)
C3—C41.522 (2)C26—H260.9800
C4—C91.517 (2)C27—H27A0.9700
C4—H40.9800C27—H27B0.9700
C7—C81.490 (3)C28—H28A0.9600
C7—H7A0.9700C28—H28B0.9600
C7—H7B0.9700C28—H28C0.9600
C8—H8A0.9600C30—H30A0.9600
C8—H8B0.9600C30—H30B0.9600
C8—H8C0.9600C30—H30C0.9600
C9—C101.388 (2)
C5—S1—C1792.62 (8)O3—C15—H15B109.5
C6—O2—C7118.23 (14)H15A—C15—H15B109.5
C12—O3—C15116.59 (14)O3—C15—H15C109.5
C29—O7—C30115.34 (15)H15A—C15—H15C109.5
C5—N1—C2116.85 (14)H15B—C15—H15C109.5
C16—N2—C5117.35 (13)O4—C16—N2123.53 (14)
C16—N2—C4121.33 (13)O4—C16—C17124.42 (15)
C5—N2—C4120.99 (14)N2—C16—C17112.04 (13)
C25—N3—C24112.18 (13)C16—C17—C26114.29 (13)
C25—N3—H3123.9C16—C17—C18114.60 (12)
C24—N3—H3123.9C26—C17—C18100.14 (13)
C28—N4—C18116.07 (12)C16—C17—S1106.54 (11)
C28—N4—C27114.43 (13)C26—C17—S1110.98 (11)
C18—N4—C27107.91 (12)C18—C17—S1110.29 (11)
C2—C1—H1A109.5N4—C18—C19115.48 (13)
C2—C1—H1B109.5N4—C18—C1799.08 (11)
H1A—C1—H1B109.5C19—C18—C17117.85 (14)
C2—C1—H1C109.5N4—C18—C25113.92 (13)
H1A—C1—H1C109.5C19—C18—C25101.49 (12)
H1B—C1—H1C109.5C17—C18—C25109.54 (13)
C3—C2—N1122.34 (16)C20—C19—C24119.01 (15)
C3—C2—C1126.15 (16)C20—C19—C18131.99 (14)
N1—C2—C1111.49 (15)C24—C19—C18108.80 (14)
C2—C3—C6123.73 (17)C19—C20—C21118.98 (16)
C2—C3—C4121.49 (15)C19—C20—H20120.5
C6—C3—C4114.66 (14)C21—C20—H20120.5
N2—C4—C9111.87 (12)C22—C21—C20121.00 (17)
N2—C4—C3108.35 (13)C22—C21—H21119.5
C9—C4—C3110.37 (13)C20—C21—H21119.5
N2—C4—H4108.7C23—C22—C21120.73 (15)
C9—C4—H4108.7C23—C22—H22119.6
C3—C4—H4108.7C21—C22—H22119.6
N1—C5—N2126.15 (15)C24—C23—C22117.44 (15)
N1—C5—S1122.36 (13)C24—C23—H23121.3
N2—C5—S1111.45 (13)C22—C23—H23121.3
O1—C6—O2123.06 (16)C23—C24—C19122.81 (16)
O1—C6—C3127.42 (17)C23—C24—N3127.24 (15)
O2—C6—C3109.52 (15)C19—C24—N3109.84 (14)
O2—C7—C8107.49 (15)O5—C25—N3126.46 (15)
O2—C7—H7A110.2O5—C25—C18125.94 (13)
C8—C7—H7A110.2N3—C25—C18107.53 (14)
O2—C7—H7B110.2C29—C26—C17115.01 (14)
C8—C7—H7B110.2C29—C26—C27117.66 (13)
H7A—C7—H7B108.5C17—C26—C27103.79 (13)
C7—C8—H8A109.5C29—C26—H26106.5
C7—C8—H8B109.5C17—C26—H26106.5
H8A—C8—H8B109.5C27—C26—H26106.5
C7—C8—H8C109.5N4—C27—C26104.93 (13)
H8A—C8—H8C109.5N4—C27—H27A110.8
H8B—C8—H8C109.5C26—C27—H27A110.8
C10—C9—C14118.29 (14)N4—C27—H27B110.8
C10—C9—C4120.96 (13)C26—C27—H27B110.8
C14—C9—C4120.62 (14)H27A—C27—H27B108.8
C11—C10—C9121.39 (15)N4—C28—H28A109.5
C11—C10—H10119.3N4—C28—H28B109.5
C9—C10—H10119.3H28A—C28—H28B109.5
C10—C11—C12119.42 (15)N4—C28—H28C109.5
C10—C11—H11120.3H28A—C28—H28C109.5
C12—C11—H11120.3H28B—C28—H28C109.5
O3—C12—C13115.67 (15)O6—C29—O7124.42 (16)
O3—C12—C11124.42 (15)O6—C29—C26124.14 (15)
C13—C12—C11119.90 (15)O7—C29—C26111.27 (15)
C14—C13—C12120.14 (15)O7—C30—H30A109.5
C14—C13—H13119.9O7—C30—H30B109.5
C12—C13—H13119.9H30A—C30—H30B109.5
C13—C14—C9120.84 (15)O7—C30—H30C109.5
C13—C14—H14119.6H30A—C30—H30C109.5
C9—C14—H14119.6H30B—C30—H30C109.5
O3—C15—H15A109.5
D—H···AD—HH···AD···AD—H···A
N3—H3···O5i0.861.972.8189 (18)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O5i0.861.972.8189 (18)169

Symmetry code: (i) .

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Journal:  J Nat Prod       Date:  1991 Jul-Aug       Impact factor: 4.050

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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