Literature DB >> 21581910

2-(2-Thien-yl)-4,5-dihydro-1H-imidazole.

Reza Kia, Hoong-Kun Fun, Hadi Kargar.   

Abstract

In title compound, C(7)H(8)N(2)S, the five-membered rings are twisted by a dihedral angle of 5.17 (10)°. Two inter-molecular N-H⋯N and C-H⋯N hydrogen bonds to the same acceptor N atom form seven-membered rings, producing R(2) (1)(7) ring motifs. These inter-actions link neighbouring mol-ecules into one-dimensional chains extended along the c axis. The crystal structure is further stabilized by weak inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21581910      PMCID: PMC2968200          DOI: 10.1107/S1600536809001068

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For reference geometrical data, see: Allen et al. (1987 ▶). For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For a related structure and the synthesis, see, Kia et al. (2008 ▶); Stibrany et al. (2004 ▶). For the applications of imidazoline derivatives, see, for example: Blancafort (1978 ▶); Chan (1993 ▶); Vizi (1986 ▶); Li et al. (1996 ▶); Ueno et al. (1995 ▶); Corey & Grogan (1999 ▶).

Experimental

Crystal data

C7H8N2S M = 152.21 Monoclinic, a = 6.1321 (2) Å b = 11.5663 (3) Å c = 10.0098 (3) Å β = 90.154 (1)° V = 709.95 (4) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 100.0 (1) K 0.54 × 0.28 × 0.22 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.825, T max = 0.922 27675 measured reflections 3100 independent reflections 3040 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.128 S = 1.24 3100 reflections 91 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001068/at2706sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001068/at2706Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8N2SF(000) = 320
Mr = 152.21Dx = 1.424 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9869 reflections
a = 6.1321 (2) Åθ = 2.5–34.3°
b = 11.5663 (3) ŵ = 0.37 mm1
c = 10.0098 (3) ÅT = 100 K
β = 90.154 (1)°Block, colourless
V = 709.95 (4) Å30.54 × 0.28 × 0.22 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3100 independent reflections
Radiation source: fine-focus sealed tube3040 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 35.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.825, Tmax = 0.922k = −18→17
27675 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.24w = 1/[σ2(Fo2) + 1.7551P] where P = (Fo2 + 2Fc2)/3
3100 reflections(Δ/σ)max < 0.001
91 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.46967 (8)0.14161 (4)0.59514 (4)0.01548 (10)
N20.0669 (2)0.29635 (14)0.61122 (15)0.0137 (2)
N10.0460 (2)0.30376 (14)0.83746 (14)0.0133 (2)
H1N10.05840.27240.90260.016*
C10.6387 (3)0.05389 (17)0.6858 (2)0.0180 (3)
H1A0.75420.01000.64820.022*
C20.5888 (3)0.05418 (16)0.81838 (19)0.0169 (3)
H2A0.66550.01030.88350.020*
C30.4092 (3)0.12742 (15)0.84860 (17)0.0136 (3)
H3A0.35300.13850.93600.016*
C40.3260 (3)0.18060 (14)0.73589 (16)0.0117 (3)
C50.1427 (3)0.26052 (14)0.72556 (16)0.0109 (3)
C6−0.1543 (3)0.36276 (17)0.79447 (17)0.0154 (3)
H6A−0.17240.43800.84030.018*
H6B−0.28490.31440.81010.018*
C7−0.1097 (3)0.37874 (16)0.64419 (17)0.0151 (3)
H7A−0.24230.36150.59120.018*
H7B−0.06340.45910.62520.018*
U11U22U33U12U13U23
S10.01727 (19)0.01847 (19)0.01071 (17)0.00446 (15)0.00185 (13)−0.00026 (14)
N20.0153 (6)0.0161 (6)0.0098 (6)0.0027 (5)0.0003 (4)0.0009 (5)
N10.0148 (6)0.0170 (6)0.0080 (5)0.0029 (5)0.0016 (4)0.0004 (5)
C10.0166 (7)0.0181 (8)0.0192 (8)0.0057 (6)−0.0001 (6)−0.0015 (6)
C20.0186 (7)0.0155 (7)0.0167 (7)0.0029 (6)−0.0034 (6)0.0009 (6)
C30.0164 (7)0.0129 (7)0.0113 (6)−0.0001 (5)−0.0002 (5)0.0004 (5)
C40.0131 (6)0.0120 (6)0.0100 (6)0.0005 (5)−0.0003 (5)−0.0005 (5)
C50.0120 (6)0.0113 (6)0.0094 (6)−0.0011 (5)0.0005 (5)−0.0004 (5)
C60.0143 (7)0.0186 (7)0.0132 (7)0.0030 (6)0.0019 (5)0.0007 (6)
C70.0152 (7)0.0181 (7)0.0120 (7)0.0035 (6)0.0000 (5)0.0018 (5)
S1—C11.7099 (19)C2—H2A0.9500
S1—C41.7239 (17)C3—C41.381 (2)
N2—C51.302 (2)C3—H3A0.9500
N2—C71.480 (2)C4—C51.459 (2)
N1—C51.364 (2)C6—C71.541 (2)
N1—C61.468 (2)C6—H6A0.9900
N1—H1N10.7501C6—H6B0.9900
C1—C21.362 (3)C7—H7A0.9900
C1—H1A0.9500C7—H7B0.9900
C2—C31.423 (3)
C1—S1—C491.82 (9)C5—C4—S1120.22 (12)
C5—N2—C7105.57 (14)N2—C5—N1116.78 (15)
C5—N1—C6107.14 (14)N2—C5—C4122.49 (15)
C5—N1—H1N1119.6N1—C5—C4120.71 (14)
C6—N1—H1N1124.2N1—C6—C7101.03 (13)
C2—C1—S1112.21 (14)N1—C6—H6A111.6
C2—C1—H1A123.9C7—C6—H6A111.6
S1—C1—H1A123.9N1—C6—H6B111.6
C1—C2—C3112.63 (16)C7—C6—H6B111.6
C1—C2—H2A123.7H6A—C6—H6B109.4
C3—C2—H2A123.7N2—C7—C6105.80 (14)
C4—C3—C2112.08 (15)N2—C7—H7A110.6
C4—C3—H3A124.0C6—C7—H7A110.6
C2—C3—H3A124.0N2—C7—H7B110.6
C3—C4—C5128.52 (15)C6—C7—H7B110.6
C3—C4—S1111.26 (13)H7A—C7—H7B108.7
C4—S1—C1—C2−0.16 (16)C6—N1—C5—N211.9 (2)
S1—C1—C2—C3−0.2 (2)C6—N1—C5—C4−169.73 (15)
C1—C2—C3—C40.5 (2)C3—C4—C5—N2−173.27 (18)
C2—C3—C4—C5179.52 (17)S1—C4—C5—N26.9 (2)
C2—C3—C4—S1−0.60 (19)C3—C4—C5—N18.5 (3)
C1—S1—C4—C30.44 (14)S1—C4—C5—N1−171.36 (13)
C1—S1—C4—C5−179.67 (15)C5—N1—C6—C7−17.79 (18)
C7—N2—C5—N10.6 (2)C5—N2—C7—C6−12.26 (19)
C7—N2—C5—C4−177.67 (15)N1—C6—C7—N218.12 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···N2i0.752.232.977 (2)171
C3—H3A···N2i0.952.603.482 (2)155
C6—H6A···Cg1ii0.992.893.539 (2)124
C6—H6B···Cg1iii0.992.833.691 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯N2i0.752.232.977 (2)171
C3—H3A⋯N2i0.952.603.482 (2)155
C6—H6ACg1ii0.992.893.539 (2)124
C6—H6BCg1iii0.992.833.691 (2)146

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the S1/C1–C4 (thiophen) ring.

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Enantioselective synthesis of alpha-amino nitriles from N-benzhydryl imines and HCN with a chiral bicyclic guanidine as catalyst.

Authors:  E J Corey; M J Grogan
Journal:  Org Lett       Date:  1999-07-15       Impact factor: 6.005

Review 3.  Compounds acting on alpha 1- and alpha 2- adrenoceptors: agonists and antagonists.

Authors:  E S Vizi
Journal:  Med Res Rev       Date:  1986 Oct-Dec       Impact factor: 12.944

Review 4.  Role of alpha 2-adrenoceptors and imidazoline-binding sites in the control of insulin secretion.

Authors:  S L Chan
Journal:  Clin Sci (Lond)       Date:  1993-12       Impact factor: 6.124

5.  2-[4-(4,5-Dihydro-1H-pyrrol-2-yl)phen-yl]-4,5-dihydro-1H-imidazole.

Authors:  Reza Kia; Hoong-Kun Fun; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-22

6.  Effect of a novel anti-rheumatic drug, TA-383, on type II collagen-induced arthritis.

Authors:  M Ueno; K Imaizumi; T Sugita; I Takata; M Takeshita
Journal:  Int J Immunopharmacol       Date:  1995-07
  6 in total
  1 in total

1.  Erratum: 2-(2-Thien-yl)-4,5-dihydro-1H-imidazole. Corrigendum.

Authors:  Reza Kia; Hoong-Kun Fun; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.