| Literature DB >> 21581910 |
Reza Kia, Hoong-Kun Fun, Hadi Kargar.
Abstract
In title compound, C(7)H(8)N(2)S, the five-membered rings are twisted by a dihedral angle of 5.17 (10)°. Two inter-molecular N-H⋯N and C-H⋯N hydrogen bonds to the same acceptor N atom form seven-membered rings, producing R(2) (1)(7) ring motifs. These inter-actions link neighbouring mol-ecules into one-dimensional chains extended along the c axis. The crystal structure is further stabilized by weak inter-molecular C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21581910 PMCID: PMC2968200 DOI: 10.1107/S1600536809001068
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H8N2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9869 reflections |
| θ = 2.5–34.3° | |
| µ = 0.37 mm−1 | |
| β = 90.154 (1)° | Block, colourless |
| 0.54 × 0.28 × 0.22 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3100 independent reflections |
| Radiation source: fine-focus sealed tube | 3040 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 27675 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3100 reflections | (Δ/σ)max < 0.001 |
| 91 parameters | Δρmax = 0.62 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.46967 (8) | 0.14161 (4) | 0.59514 (4) | 0.01548 (10) | |
| N2 | 0.0669 (2) | 0.29635 (14) | 0.61122 (15) | 0.0137 (2) | |
| N1 | 0.0460 (2) | 0.30376 (14) | 0.83746 (14) | 0.0133 (2) | |
| H1N1 | 0.0584 | 0.2724 | 0.9026 | 0.016* | |
| C1 | 0.6387 (3) | 0.05389 (17) | 0.6858 (2) | 0.0180 (3) | |
| H1A | 0.7542 | 0.0100 | 0.6482 | 0.022* | |
| C2 | 0.5888 (3) | 0.05418 (16) | 0.81838 (19) | 0.0169 (3) | |
| H2A | 0.6655 | 0.0103 | 0.8835 | 0.020* | |
| C3 | 0.4092 (3) | 0.12742 (15) | 0.84860 (17) | 0.0136 (3) | |
| H3A | 0.3530 | 0.1385 | 0.9360 | 0.016* | |
| C4 | 0.3260 (3) | 0.18060 (14) | 0.73589 (16) | 0.0117 (3) | |
| C5 | 0.1427 (3) | 0.26052 (14) | 0.72556 (16) | 0.0109 (3) | |
| C6 | −0.1543 (3) | 0.36276 (17) | 0.79447 (17) | 0.0154 (3) | |
| H6A | −0.1724 | 0.4380 | 0.8403 | 0.018* | |
| H6B | −0.2849 | 0.3144 | 0.8101 | 0.018* | |
| C7 | −0.1097 (3) | 0.37874 (16) | 0.64419 (17) | 0.0151 (3) | |
| H7A | −0.2423 | 0.3615 | 0.5912 | 0.018* | |
| H7B | −0.0634 | 0.4591 | 0.6252 | 0.018* |
| S1 | 0.01727 (19) | 0.01847 (19) | 0.01071 (17) | 0.00446 (15) | 0.00185 (13) | −0.00026 (14) |
| N2 | 0.0153 (6) | 0.0161 (6) | 0.0098 (6) | 0.0027 (5) | 0.0003 (4) | 0.0009 (5) |
| N1 | 0.0148 (6) | 0.0170 (6) | 0.0080 (5) | 0.0029 (5) | 0.0016 (4) | 0.0004 (5) |
| C1 | 0.0166 (7) | 0.0181 (8) | 0.0192 (8) | 0.0057 (6) | −0.0001 (6) | −0.0015 (6) |
| C2 | 0.0186 (7) | 0.0155 (7) | 0.0167 (7) | 0.0029 (6) | −0.0034 (6) | 0.0009 (6) |
| C3 | 0.0164 (7) | 0.0129 (7) | 0.0113 (6) | −0.0001 (5) | −0.0002 (5) | 0.0004 (5) |
| C4 | 0.0131 (6) | 0.0120 (6) | 0.0100 (6) | 0.0005 (5) | −0.0003 (5) | −0.0005 (5) |
| C5 | 0.0120 (6) | 0.0113 (6) | 0.0094 (6) | −0.0011 (5) | 0.0005 (5) | −0.0004 (5) |
| C6 | 0.0143 (7) | 0.0186 (7) | 0.0132 (7) | 0.0030 (6) | 0.0019 (5) | 0.0007 (6) |
| C7 | 0.0152 (7) | 0.0181 (7) | 0.0120 (7) | 0.0035 (6) | 0.0000 (5) | 0.0018 (5) |
| S1—C1 | 1.7099 (19) | C2—H2A | 0.9500 |
| S1—C4 | 1.7239 (17) | C3—C4 | 1.381 (2) |
| N2—C5 | 1.302 (2) | C3—H3A | 0.9500 |
| N2—C7 | 1.480 (2) | C4—C5 | 1.459 (2) |
| N1—C5 | 1.364 (2) | C6—C7 | 1.541 (2) |
| N1—C6 | 1.468 (2) | C6—H6A | 0.9900 |
| N1—H1N1 | 0.7501 | C6—H6B | 0.9900 |
| C1—C2 | 1.362 (3) | C7—H7A | 0.9900 |
| C1—H1A | 0.9500 | C7—H7B | 0.9900 |
| C2—C3 | 1.423 (3) | ||
| C1—S1—C4 | 91.82 (9) | C5—C4—S1 | 120.22 (12) |
| C5—N2—C7 | 105.57 (14) | N2—C5—N1 | 116.78 (15) |
| C5—N1—C6 | 107.14 (14) | N2—C5—C4 | 122.49 (15) |
| C5—N1—H1N1 | 119.6 | N1—C5—C4 | 120.71 (14) |
| C6—N1—H1N1 | 124.2 | N1—C6—C7 | 101.03 (13) |
| C2—C1—S1 | 112.21 (14) | N1—C6—H6A | 111.6 |
| C2—C1—H1A | 123.9 | C7—C6—H6A | 111.6 |
| S1—C1—H1A | 123.9 | N1—C6—H6B | 111.6 |
| C1—C2—C3 | 112.63 (16) | C7—C6—H6B | 111.6 |
| C1—C2—H2A | 123.7 | H6A—C6—H6B | 109.4 |
| C3—C2—H2A | 123.7 | N2—C7—C6 | 105.80 (14) |
| C4—C3—C2 | 112.08 (15) | N2—C7—H7A | 110.6 |
| C4—C3—H3A | 124.0 | C6—C7—H7A | 110.6 |
| C2—C3—H3A | 124.0 | N2—C7—H7B | 110.6 |
| C3—C4—C5 | 128.52 (15) | C6—C7—H7B | 110.6 |
| C3—C4—S1 | 111.26 (13) | H7A—C7—H7B | 108.7 |
| C4—S1—C1—C2 | −0.16 (16) | C6—N1—C5—N2 | 11.9 (2) |
| S1—C1—C2—C3 | −0.2 (2) | C6—N1—C5—C4 | −169.73 (15) |
| C1—C2—C3—C4 | 0.5 (2) | C3—C4—C5—N2 | −173.27 (18) |
| C2—C3—C4—C5 | 179.52 (17) | S1—C4—C5—N2 | 6.9 (2) |
| C2—C3—C4—S1 | −0.60 (19) | C3—C4—C5—N1 | 8.5 (3) |
| C1—S1—C4—C3 | 0.44 (14) | S1—C4—C5—N1 | −171.36 (13) |
| C1—S1—C4—C5 | −179.67 (15) | C5—N1—C6—C7 | −17.79 (18) |
| C7—N2—C5—N1 | 0.6 (2) | C5—N2—C7—C6 | −12.26 (19) |
| C7—N2—C5—C4 | −177.67 (15) | N1—C6—C7—N2 | 18.12 (18) |
| H··· | ||||
| N1—H1N1···N2i | 0.75 | 2.23 | 2.977 (2) | 171 |
| C3—H3A···N2i | 0.95 | 2.60 | 3.482 (2) | 155 |
| C6—H6A···Cg1ii | 0.99 | 2.89 | 3.539 (2) | 124 |
| C6—H6B···Cg1iii | 0.99 | 2.83 | 3.691 (2) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.75 | 2.23 | 2.977 (2) | 171 |
| C3—H3 | 0.95 | 2.60 | 3.482 (2) | 155 |
| C6—H6 | 0.99 | 2.89 | 3.539 (2) | 124 |
| C6—H6 | 0.99 | 2.83 | 3.691 (2) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the S1/C1–C4 (thiophen) ring.