| Literature DB >> 21581895 |
Yun Chai1, Zhi-Long Wan, Hui-Yuan Guo, Ming-Liang Liu.
Abstract
In the title compound, C(13)H(23)N(3)O(4), the piperidine ring adopts a chair conformation. An intra-molecular N-H⋯O hydrogen bond is observed between the carbamoyl and carboxyl-ate groups. In the crystal structure, mol-ecules form inversion dimers linked by pairs of N-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21581895 PMCID: PMC2968237 DOI: 10.1107/S1600536809000634
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H23N3O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1147 reflections | |
| θ = 2.6–23.6° | |
| µ = 0.09 mm−1 | |
| α = 79.571 (1)° | |
| β = 73.034 (1)° | Block, colorless |
| γ = 84.973 (2)° | 0.50 × 0.45 × 0.44 mm |
| Bruker SMART APEX CCD diffractometer | 2727 independent reflections |
| Radiation source: fine-focus sealed tube | 1535 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 4100 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2727 reflections | Δρmax = 0.22 e Å−3 |
| 187 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.052 (9) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.3951 (3) | 0.3430 (2) | 0.4995 (2) | 0.0486 (6) | |
| N2 | 0.0625 (3) | 0.1810 (2) | 0.4744 (2) | 0.0647 (8) | |
| H2A | 0.0302 | 0.1251 | 0.4355 | 0.078* | |
| H2B | 0.0918 | 0.2623 | 0.4374 | 0.078* | |
| N3 | 0.1916 (3) | 0.1524 (2) | 0.8514 (2) | 0.0485 (6) | |
| O1 | 0.6155 (3) | 0.3495 (2) | 0.31633 (18) | 0.0636 (6) | |
| O2 | 0.3110 (3) | 0.4119 (2) | 0.32090 (19) | 0.0649 (6) | |
| O3 | 0.0266 (4) | 0.0264 (2) | 0.6479 (2) | 0.0825 (8) | |
| O4 | 0.3333 (3) | 0.0907 (2) | 0.90663 (17) | 0.0580 (6) | |
| C1 | 0.4323 (4) | 0.3706 (3) | 0.3737 (3) | 0.0504 (7) | |
| C2 | 0.2080 (4) | 0.3727 (3) | 0.5782 (3) | 0.0502 (7) | |
| H2C | 0.1290 | 0.4149 | 0.5257 | 0.060* | |
| H2D | 0.2180 | 0.4373 | 0.6301 | 0.060* | |
| C3 | 0.1121 (4) | 0.2457 (3) | 0.6625 (2) | 0.0453 (7) | |
| C4 | 0.2516 (4) | 0.1757 (3) | 0.7326 (2) | 0.0426 (7) | |
| C5 | 0.4480 (4) | 0.1488 (3) | 0.6534 (3) | 0.0533 (8) | |
| H5A | 0.4454 | 0.0802 | 0.6036 | 0.064* | |
| H5B | 0.5289 | 0.1142 | 0.7067 | 0.064* | |
| C6 | 0.5292 (4) | 0.2785 (3) | 0.5672 (3) | 0.0549 (8) | |
| H6A | 0.5545 | 0.3409 | 0.6163 | 0.066* | |
| H6B | 0.6480 | 0.2567 | 0.5082 | 0.066* | |
| C7 | 0.0673 (4) | 0.1420 (3) | 0.5911 (3) | 0.0523 (7) | |
| C8 | −0.0772 (4) | 0.2898 (3) | 0.7492 (3) | 0.0632 (9) | |
| H8A | −0.1396 | 0.2111 | 0.8017 | 0.095* | |
| H8B | −0.1565 | 0.3366 | 0.6999 | 0.095* | |
| H8C | −0.0538 | 0.3494 | 0.8003 | 0.095* | |
| C9 | 0.2502 (5) | 0.0608 (4) | 1.0379 (3) | 0.0750 (10) | |
| H9A | 0.2237 | 0.1438 | 1.0719 | 0.112* | |
| H9B | 0.3364 | 0.0036 | 1.0756 | 0.112* | |
| H9C | 0.1342 | 0.0148 | 1.0548 | 0.112* | |
| C10 | 0.6835 (5) | 0.3554 (3) | 0.1795 (3) | 0.0698 (10) | |
| C11 | 0.5789 (7) | 0.2537 (4) | 0.1411 (4) | 0.1179 (17) | |
| H11A | 0.5946 | 0.1648 | 0.1865 | 0.177* | |
| H11B | 0.6297 | 0.2525 | 0.0530 | 0.177* | |
| H11C | 0.4464 | 0.2796 | 0.1594 | 0.177* | |
| C12 | 0.6609 (5) | 0.4976 (3) | 0.1139 (3) | 0.0817 (11) | |
| H12A | 0.5286 | 0.5235 | 0.1307 | 0.123* | |
| H12B | 0.7158 | 0.5015 | 0.0255 | 0.123* | |
| H12C | 0.7241 | 0.5588 | 0.1436 | 0.123* | |
| C13 | 0.8911 (6) | 0.3152 (5) | 0.1616 (4) | 0.1190 (17) | |
| H13A | 0.9503 | 0.3801 | 0.1898 | 0.179* | |
| H13B | 0.9521 | 0.3132 | 0.0746 | 0.179* | |
| H13C | 0.9025 | 0.2267 | 0.2090 | 0.179* |
| N1 | 0.0479 (14) | 0.0503 (14) | 0.0474 (14) | −0.0055 (11) | −0.0176 (11) | 0.0010 (11) |
| N2 | 0.088 (2) | 0.0558 (15) | 0.0618 (17) | −0.0246 (13) | −0.0409 (15) | 0.0035 (12) |
| N3 | 0.0467 (14) | 0.0515 (14) | 0.0507 (15) | 0.0004 (10) | −0.0223 (12) | −0.0041 (11) |
| O1 | 0.0670 (15) | 0.0675 (14) | 0.0497 (13) | −0.0009 (11) | −0.0118 (11) | −0.0012 (10) |
| O2 | 0.0748 (15) | 0.0634 (13) | 0.0592 (13) | −0.0091 (11) | −0.0332 (12) | 0.0098 (10) |
| O3 | 0.130 (2) | 0.0610 (15) | 0.0685 (15) | −0.0418 (14) | −0.0493 (15) | 0.0113 (11) |
| O4 | 0.0497 (12) | 0.0750 (14) | 0.0472 (12) | 0.0076 (10) | −0.0202 (9) | 0.0013 (10) |
| C1 | 0.060 (2) | 0.0407 (16) | 0.0516 (18) | −0.0073 (14) | −0.0207 (16) | 0.0003 (13) |
| C2 | 0.0539 (18) | 0.0430 (16) | 0.0570 (18) | 0.0003 (13) | −0.0233 (15) | −0.0048 (13) |
| C3 | 0.0460 (16) | 0.0454 (15) | 0.0483 (16) | −0.0040 (12) | −0.0214 (13) | −0.0028 (12) |
| C4 | 0.0469 (16) | 0.0385 (14) | 0.0454 (17) | −0.0041 (12) | −0.0180 (13) | −0.0050 (12) |
| C5 | 0.0521 (17) | 0.0562 (18) | 0.0506 (17) | 0.0067 (14) | −0.0195 (14) | −0.0023 (14) |
| C6 | 0.0487 (17) | 0.0651 (19) | 0.0513 (18) | −0.0047 (14) | −0.0197 (14) | −0.0001 (14) |
| C7 | 0.0566 (18) | 0.0502 (18) | 0.0550 (19) | −0.0094 (14) | −0.0271 (15) | 0.0013 (14) |
| C8 | 0.0476 (18) | 0.072 (2) | 0.066 (2) | 0.0032 (15) | −0.0190 (15) | −0.0008 (16) |
| C9 | 0.067 (2) | 0.106 (3) | 0.0469 (19) | 0.0100 (19) | −0.0218 (17) | 0.0019 (18) |
| C10 | 0.091 (3) | 0.061 (2) | 0.0489 (19) | −0.0032 (18) | −0.0078 (18) | −0.0056 (15) |
| C11 | 0.183 (5) | 0.084 (3) | 0.081 (3) | −0.036 (3) | −0.008 (3) | −0.031 (2) |
| C12 | 0.109 (3) | 0.071 (2) | 0.059 (2) | −0.018 (2) | −0.020 (2) | 0.0060 (17) |
| C13 | 0.123 (4) | 0.124 (4) | 0.072 (3) | 0.029 (3) | 0.012 (3) | 0.001 (2) |
| N1—C1 | 1.352 (3) | C5—H5B | 0.9700 |
| N1—C2 | 1.447 (3) | C6—H6A | 0.9700 |
| N1—C6 | 1.461 (3) | C6—H6B | 0.9700 |
| N2—C7 | 1.320 (3) | C8—H8A | 0.9600 |
| N2—H2A | 0.8600 | C8—H8B | 0.9600 |
| N2—H2B | 0.8600 | C8—H8C | 0.9600 |
| N3—C4 | 1.274 (3) | C9—H9A | 0.9600 |
| N3—O4 | 1.412 (3) | C9—H9B | 0.9600 |
| O1—C1 | 1.334 (3) | C9—H9C | 0.9600 |
| O1—C10 | 1.477 (4) | C10—C12 | 1.502 (4) |
| O2—C1 | 1.220 (3) | C10—C13 | 1.512 (5) |
| O3—C7 | 1.234 (3) | C10—C11 | 1.522 (5) |
| O4—C9 | 1.421 (3) | C11—H11A | 0.9600 |
| C2—C3 | 1.534 (3) | C11—H11B | 0.9600 |
| C2—H2C | 0.9700 | C11—H11C | 0.9600 |
| C2—H2D | 0.9700 | C12—H12A | 0.9600 |
| C3—C4 | 1.526 (3) | C12—H12B | 0.9600 |
| C3—C8 | 1.536 (4) | C12—H12C | 0.9600 |
| C3—C7 | 1.537 (4) | C13—H13A | 0.9600 |
| C4—C5 | 1.496 (4) | C13—H13B | 0.9600 |
| C5—C6 | 1.528 (4) | C13—H13C | 0.9600 |
| C5—H5A | 0.9700 | ||
| C1—N1—C2 | 120.1 (2) | O3—C7—N2 | 122.2 (3) |
| C1—N1—C6 | 125.2 (2) | O3—C7—C3 | 118.3 (2) |
| C2—N1—C6 | 114.7 (2) | N2—C7—C3 | 119.4 (2) |
| C7—N2—H2A | 120.0 | C3—C8—H8A | 109.5 |
| C7—N2—H2B | 120.0 | C3—C8—H8B | 109.5 |
| H2A—N2—H2B | 120.0 | H8A—C8—H8B | 109.5 |
| C4—N3—O4 | 112.3 (2) | C3—C8—H8C | 109.5 |
| C1—O1—C10 | 121.1 (2) | H8A—C8—H8C | 109.5 |
| N3—O4—C9 | 108.1 (2) | H8B—C8—H8C | 109.5 |
| O2—C1—O1 | 125.0 (3) | O4—C9—H9A | 109.5 |
| O2—C1—N1 | 123.0 (3) | O4—C9—H9B | 109.5 |
| O1—C1—N1 | 112.0 (3) | H9A—C9—H9B | 109.5 |
| N1—C2—C3 | 112.9 (2) | O4—C9—H9C | 109.5 |
| N1—C2—H2C | 109.0 | H9A—C9—H9C | 109.5 |
| C3—C2—H2C | 109.0 | H9B—C9—H9C | 109.5 |
| N1—C2—H2D | 109.0 | O1—C10—C12 | 110.4 (3) |
| C3—C2—H2D | 109.0 | O1—C10—C13 | 101.3 (3) |
| H2C—C2—H2D | 107.8 | C12—C10—C13 | 110.6 (3) |
| C4—C3—C2 | 106.7 (2) | O1—C10—C11 | 109.4 (3) |
| C4—C3—C8 | 113.3 (2) | C12—C10—C11 | 112.3 (3) |
| C2—C3—C8 | 108.6 (2) | C13—C10—C11 | 112.2 (3) |
| C4—C3—C7 | 107.2 (2) | C10—C11—H11A | 109.5 |
| C2—C3—C7 | 114.1 (2) | C10—C11—H11B | 109.5 |
| C8—C3—C7 | 107.1 (2) | H11A—C11—H11B | 109.5 |
| N3—C4—C5 | 127.1 (2) | C10—C11—H11C | 109.5 |
| N3—C4—C3 | 117.0 (2) | H11A—C11—H11C | 109.5 |
| C5—C4—C3 | 115.8 (2) | H11B—C11—H11C | 109.5 |
| C4—C5—C6 | 110.8 (2) | C10—C12—H12A | 109.5 |
| C4—C5—H5A | 109.5 | C10—C12—H12B | 109.5 |
| C6—C5—H5A | 109.5 | H12A—C12—H12B | 109.5 |
| C4—C5—H5B | 109.5 | C10—C12—H12C | 109.5 |
| C6—C5—H5B | 109.5 | H12A—C12—H12C | 109.5 |
| H5A—C5—H5B | 108.1 | H12B—C12—H12C | 109.5 |
| N1—C6—C5 | 110.2 (2) | C10—C13—H13A | 109.5 |
| N1—C6—H6A | 109.6 | C10—C13—H13B | 109.5 |
| C5—C6—H6A | 109.6 | H13A—C13—H13B | 109.5 |
| N1—C6—H6B | 109.6 | C10—C13—H13C | 109.5 |
| C5—C6—H6B | 109.6 | H13A—C13—H13C | 109.5 |
| H6A—C6—H6B | 108.1 | H13B—C13—H13C | 109.5 |
| C4—N3—O4—C9 | −176.3 (2) | C2—C3—C4—C5 | −51.9 (3) |
| C10—O1—C1—O2 | −9.5 (4) | C8—C3—C4—C5 | −171.3 (2) |
| C10—O1—C1—N1 | 171.7 (2) | C7—C3—C4—C5 | 70.7 (3) |
| C2—N1—C1—O2 | −5.1 (4) | N3—C4—C5—C6 | −124.0 (3) |
| C6—N1—C1—O2 | 172.4 (3) | C3—C4—C5—C6 | 52.5 (3) |
| C2—N1—C1—O1 | 173.8 (2) | C1—N1—C6—C5 | −122.0 (3) |
| C6—N1—C1—O1 | −8.8 (4) | C2—N1—C6—C5 | 55.6 (3) |
| C1—N1—C2—C3 | 119.1 (3) | C4—C5—C6—N1 | −50.8 (3) |
| C6—N1—C2—C3 | −58.6 (3) | C4—C3—C7—O3 | 47.7 (3) |
| N1—C2—C3—C4 | 52.9 (3) | C2—C3—C7—O3 | 165.5 (3) |
| N1—C2—C3—C8 | 175.4 (2) | C8—C3—C7—O3 | −74.2 (3) |
| N1—C2—C3—C7 | −65.3 (3) | C4—C3—C7—N2 | −136.3 (3) |
| O4—N3—C4—C5 | −2.0 (4) | C2—C3—C7—N2 | −18.5 (4) |
| O4—N3—C4—C3 | −178.5 (2) | C8—C3—C7—N2 | 101.7 (3) |
| C2—C3—C4—N3 | 124.9 (2) | C1—O1—C10—C12 | 66.9 (3) |
| C8—C3—C4—N3 | 5.5 (3) | C1—O1—C10—C13 | −175.9 (3) |
| C7—C3—C4—N3 | −112.4 (3) | C1—O1—C10—C11 | −57.2 (4) |
| H··· | ||||
| N2—H2B···O2 | 0.86 | 2.25 | 3.026 (3) | 150 |
| N2—H2A···O3i | 0.86 | 2.06 | 2.913 (3) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.25 | 3.026 (3) | 150 |
| N2—H2 | 0.86 | 2.06 | 2.913 (3) | 173 |
Symmetry code: (i) .