Literature DB >> 21581895

tert-Butyl 3-carbamoyl-4-methoxy-imino-3-methyl-piperidine-1-carboxyl-ate.

Yun Chai1, Zhi-Long Wan, Hui-Yuan Guo, Ming-Liang Liu.   

Abstract

In the title compound, C(13)H(23)N(3)O(4), the piperidine ring adopts a chair conformation. An intra-molecular N-H⋯O hydrogen bond is observed between the carbamoyl and carboxyl-ate groups. In the crystal structure, mol-ecules form inversion dimers linked by pairs of N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21581895      PMCID: PMC2968237          DOI: 10.1107/S1600536809000634

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and properties of quinolone derivatives, see: Anderson & Osheroff (2001 ▶); Ball et al. (1998 ▶); Choi et al. (2004 ▶); Ray et al. (2005 ▶); Wang, Guo & Wang (2008 ▶); Wang, Liu & Cao (2008 ▶).

Experimental

Crystal data

C13H23N3O4 M = 285.34 Triclinic, a = 7.3750 (14) Å b = 10.0132 (16) Å c = 11.3383 (18) Å α = 79.5710 (10)° β = 73.0340 (10)° γ = 84.973 (2)° V = 787.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.50 × 0.45 × 0.44 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.946, T max = 0.963 4100 measured reflections 2727 independent reflections 1535 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.176 S = 1.04 2727 reflections 187 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000634/is2378sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000634/is2378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H23N3O4Z = 2
Mr = 285.34F(000) = 308
Triclinic, P1Dx = 1.204 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3750 (14) ÅCell parameters from 1147 reflections
b = 10.0132 (16) Åθ = 2.6–23.6°
c = 11.3383 (18) ŵ = 0.09 mm1
α = 79.571 (1)°T = 298 K
β = 73.034 (1)°Block, colorless
γ = 84.973 (2)°0.50 × 0.45 × 0.44 mm
V = 787.1 (2) Å3
Bruker SMART APEX CCD diffractometer2727 independent reflections
Radiation source: fine-focus sealed tube1535 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→8
Tmin = 0.946, Tmax = 0.963k = −11→10
4100 measured reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.176w = 1/[σ2(Fo2) + (0.0793P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2727 reflectionsΔρmax = 0.22 e Å3
187 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.052 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3951 (3)0.3430 (2)0.4995 (2)0.0486 (6)
N20.0625 (3)0.1810 (2)0.4744 (2)0.0647 (8)
H2A0.03020.12510.43550.078*
H2B0.09180.26230.43740.078*
N30.1916 (3)0.1524 (2)0.8514 (2)0.0485 (6)
O10.6155 (3)0.3495 (2)0.31633 (18)0.0636 (6)
O20.3110 (3)0.4119 (2)0.32090 (19)0.0649 (6)
O30.0266 (4)0.0264 (2)0.6479 (2)0.0825 (8)
O40.3333 (3)0.0907 (2)0.90663 (17)0.0580 (6)
C10.4323 (4)0.3706 (3)0.3737 (3)0.0504 (7)
C20.2080 (4)0.3727 (3)0.5782 (3)0.0502 (7)
H2C0.12900.41490.52570.060*
H2D0.21800.43730.63010.060*
C30.1121 (4)0.2457 (3)0.6625 (2)0.0453 (7)
C40.2516 (4)0.1757 (3)0.7326 (2)0.0426 (7)
C50.4480 (4)0.1488 (3)0.6534 (3)0.0533 (8)
H5A0.44540.08020.60360.064*
H5B0.52890.11420.70670.064*
C60.5292 (4)0.2785 (3)0.5672 (3)0.0549 (8)
H6A0.55450.34090.61630.066*
H6B0.64800.25670.50820.066*
C70.0673 (4)0.1420 (3)0.5911 (3)0.0523 (7)
C8−0.0772 (4)0.2898 (3)0.7492 (3)0.0632 (9)
H8A−0.13960.21110.80170.095*
H8B−0.15650.33660.69990.095*
H8C−0.05380.34940.80030.095*
C90.2502 (5)0.0608 (4)1.0379 (3)0.0750 (10)
H9A0.22370.14381.07190.112*
H9B0.33640.00361.07560.112*
H9C0.13420.01481.05480.112*
C100.6835 (5)0.3554 (3)0.1795 (3)0.0698 (10)
C110.5789 (7)0.2537 (4)0.1411 (4)0.1179 (17)
H11A0.59460.16480.18650.177*
H11B0.62970.25250.05300.177*
H11C0.44640.27960.15940.177*
C120.6609 (5)0.4976 (3)0.1139 (3)0.0817 (11)
H12A0.52860.52350.13070.123*
H12B0.71580.50150.02550.123*
H12C0.72410.55880.14360.123*
C130.8911 (6)0.3152 (5)0.1616 (4)0.1190 (17)
H13A0.95030.38010.18980.179*
H13B0.95210.31320.07460.179*
H13C0.90250.22670.20900.179*
U11U22U33U12U13U23
N10.0479 (14)0.0503 (14)0.0474 (14)−0.0055 (11)−0.0176 (11)0.0010 (11)
N20.088 (2)0.0558 (15)0.0618 (17)−0.0246 (13)−0.0409 (15)0.0035 (12)
N30.0467 (14)0.0515 (14)0.0507 (15)0.0004 (10)−0.0223 (12)−0.0041 (11)
O10.0670 (15)0.0675 (14)0.0497 (13)−0.0009 (11)−0.0118 (11)−0.0012 (10)
O20.0748 (15)0.0634 (13)0.0592 (13)−0.0091 (11)−0.0332 (12)0.0098 (10)
O30.130 (2)0.0610 (15)0.0685 (15)−0.0418 (14)−0.0493 (15)0.0113 (11)
O40.0497 (12)0.0750 (14)0.0472 (12)0.0076 (10)−0.0202 (9)0.0013 (10)
C10.060 (2)0.0407 (16)0.0516 (18)−0.0073 (14)−0.0207 (16)0.0003 (13)
C20.0539 (18)0.0430 (16)0.0570 (18)0.0003 (13)−0.0233 (15)−0.0048 (13)
C30.0460 (16)0.0454 (15)0.0483 (16)−0.0040 (12)−0.0214 (13)−0.0028 (12)
C40.0469 (16)0.0385 (14)0.0454 (17)−0.0041 (12)−0.0180 (13)−0.0050 (12)
C50.0521 (17)0.0562 (18)0.0506 (17)0.0067 (14)−0.0195 (14)−0.0023 (14)
C60.0487 (17)0.0651 (19)0.0513 (18)−0.0047 (14)−0.0197 (14)−0.0001 (14)
C70.0566 (18)0.0502 (18)0.0550 (19)−0.0094 (14)−0.0271 (15)0.0013 (14)
C80.0476 (18)0.072 (2)0.066 (2)0.0032 (15)−0.0190 (15)−0.0008 (16)
C90.067 (2)0.106 (3)0.0469 (19)0.0100 (19)−0.0218 (17)0.0019 (18)
C100.091 (3)0.061 (2)0.0489 (19)−0.0032 (18)−0.0078 (18)−0.0056 (15)
C110.183 (5)0.084 (3)0.081 (3)−0.036 (3)−0.008 (3)−0.031 (2)
C120.109 (3)0.071 (2)0.059 (2)−0.018 (2)−0.020 (2)0.0060 (17)
C130.123 (4)0.124 (4)0.072 (3)0.029 (3)0.012 (3)0.001 (2)
N1—C11.352 (3)C5—H5B0.9700
N1—C21.447 (3)C6—H6A0.9700
N1—C61.461 (3)C6—H6B0.9700
N2—C71.320 (3)C8—H8A0.9600
N2—H2A0.8600C8—H8B0.9600
N2—H2B0.8600C8—H8C0.9600
N3—C41.274 (3)C9—H9A0.9600
N3—O41.412 (3)C9—H9B0.9600
O1—C11.334 (3)C9—H9C0.9600
O1—C101.477 (4)C10—C121.502 (4)
O2—C11.220 (3)C10—C131.512 (5)
O3—C71.234 (3)C10—C111.522 (5)
O4—C91.421 (3)C11—H11A0.9600
C2—C31.534 (3)C11—H11B0.9600
C2—H2C0.9700C11—H11C0.9600
C2—H2D0.9700C12—H12A0.9600
C3—C41.526 (3)C12—H12B0.9600
C3—C81.536 (4)C12—H12C0.9600
C3—C71.537 (4)C13—H13A0.9600
C4—C51.496 (4)C13—H13B0.9600
C5—C61.528 (4)C13—H13C0.9600
C5—H5A0.9700
C1—N1—C2120.1 (2)O3—C7—N2122.2 (3)
C1—N1—C6125.2 (2)O3—C7—C3118.3 (2)
C2—N1—C6114.7 (2)N2—C7—C3119.4 (2)
C7—N2—H2A120.0C3—C8—H8A109.5
C7—N2—H2B120.0C3—C8—H8B109.5
H2A—N2—H2B120.0H8A—C8—H8B109.5
C4—N3—O4112.3 (2)C3—C8—H8C109.5
C1—O1—C10121.1 (2)H8A—C8—H8C109.5
N3—O4—C9108.1 (2)H8B—C8—H8C109.5
O2—C1—O1125.0 (3)O4—C9—H9A109.5
O2—C1—N1123.0 (3)O4—C9—H9B109.5
O1—C1—N1112.0 (3)H9A—C9—H9B109.5
N1—C2—C3112.9 (2)O4—C9—H9C109.5
N1—C2—H2C109.0H9A—C9—H9C109.5
C3—C2—H2C109.0H9B—C9—H9C109.5
N1—C2—H2D109.0O1—C10—C12110.4 (3)
C3—C2—H2D109.0O1—C10—C13101.3 (3)
H2C—C2—H2D107.8C12—C10—C13110.6 (3)
C4—C3—C2106.7 (2)O1—C10—C11109.4 (3)
C4—C3—C8113.3 (2)C12—C10—C11112.3 (3)
C2—C3—C8108.6 (2)C13—C10—C11112.2 (3)
C4—C3—C7107.2 (2)C10—C11—H11A109.5
C2—C3—C7114.1 (2)C10—C11—H11B109.5
C8—C3—C7107.1 (2)H11A—C11—H11B109.5
N3—C4—C5127.1 (2)C10—C11—H11C109.5
N3—C4—C3117.0 (2)H11A—C11—H11C109.5
C5—C4—C3115.8 (2)H11B—C11—H11C109.5
C4—C5—C6110.8 (2)C10—C12—H12A109.5
C4—C5—H5A109.5C10—C12—H12B109.5
C6—C5—H5A109.5H12A—C12—H12B109.5
C4—C5—H5B109.5C10—C12—H12C109.5
C6—C5—H5B109.5H12A—C12—H12C109.5
H5A—C5—H5B108.1H12B—C12—H12C109.5
N1—C6—C5110.2 (2)C10—C13—H13A109.5
N1—C6—H6A109.6C10—C13—H13B109.5
C5—C6—H6A109.6H13A—C13—H13B109.5
N1—C6—H6B109.6C10—C13—H13C109.5
C5—C6—H6B109.6H13A—C13—H13C109.5
H6A—C6—H6B108.1H13B—C13—H13C109.5
C4—N3—O4—C9−176.3 (2)C2—C3—C4—C5−51.9 (3)
C10—O1—C1—O2−9.5 (4)C8—C3—C4—C5−171.3 (2)
C10—O1—C1—N1171.7 (2)C7—C3—C4—C570.7 (3)
C2—N1—C1—O2−5.1 (4)N3—C4—C5—C6−124.0 (3)
C6—N1—C1—O2172.4 (3)C3—C4—C5—C652.5 (3)
C2—N1—C1—O1173.8 (2)C1—N1—C6—C5−122.0 (3)
C6—N1—C1—O1−8.8 (4)C2—N1—C6—C555.6 (3)
C1—N1—C2—C3119.1 (3)C4—C5—C6—N1−50.8 (3)
C6—N1—C2—C3−58.6 (3)C4—C3—C7—O347.7 (3)
N1—C2—C3—C452.9 (3)C2—C3—C7—O3165.5 (3)
N1—C2—C3—C8175.4 (2)C8—C3—C7—O3−74.2 (3)
N1—C2—C3—C7−65.3 (3)C4—C3—C7—N2−136.3 (3)
O4—N3—C4—C5−2.0 (4)C2—C3—C7—N2−18.5 (4)
O4—N3—C4—C3−178.5 (2)C8—C3—C7—N2101.7 (3)
C2—C3—C4—N3124.9 (2)C1—O1—C10—C1266.9 (3)
C8—C3—C4—N35.5 (3)C1—O1—C10—C13−175.9 (3)
C7—C3—C4—N3−112.4 (3)C1—O1—C10—C11−57.2 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O20.862.253.026 (3)150
N2—H2A···O3i0.862.062.913 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O20.862.253.026 (3)150
N2—H2A⋯O3i0.862.062.913 (3)173

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Therapeutic advances of new fluoroquinolones.

Authors:  P Ball; A Fernald; G Tillotson
Journal:  Expert Opin Investig Drugs       Date:  1998-05       Impact factor: 6.206

Review 3.  Type II topoisomerases as targets for quinolone antibacterials: turning Dr. Jekyll into Mr. Hyde.

Authors:  V E Anderson; N Osheroff
Journal:  Curr Pharm Des       Date:  2001-03       Impact factor: 3.116

4.  [Synthesis and antibacterial activity of 7-(3-amino-4-alkoxyimino-1 -piperidyl) -quinolones].

Authors:  Xiu-Yun Wang; Qiang Guo; Yu-Cheng Wang; Bing-Quan Liu; Ming-Liang Liu; Lan-Ying Sun; Hui-Yuan Guo
Journal:  Yao Xue Xue Bao       Date:  2008-08

5.  Syntheses and biological evaluation of new fluoroquinolone antibacterials containing chiral oxiimino pyrrolidine.

Authors:  Dong Rack Choi; Jung Han Shin; Jin Yang; Sue Hye Yoon; Yong Ho Jung
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

6.  tert-Butyl 4-carbamoyl-3-methoxy-imino-4-methyl-piperidine-1-carboxyl-ate.

Authors:  Juxian Wang; Mingliang Liu; Jue Cao; Yucheng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  6 in total
  1 in total

1.  N-(4-Hydroxy-pheneth-yl)acetamide.

Authors:  Bo Wang; Yun Chai; Peizhen Tao; Mingliang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-08
  1 in total

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