| Literature DB >> 21581888 |
Monika Wujec, Liliana Mazur, Zofia Rzączyńska.
Abstract
The title compound, C(9)H(11)N(3)S(2), exists in the thione form in the crystal structure. The central triazole ring is almost perpendicular to the thio-phene ring which is disordered over two orientations [dihedral angles of 88.5 (7) and 85.7 (8)° for the two orientations]. The crystal structure is stabilized by strong inter-molecular N-H⋯S hydrogen bonds, forming centrosymmetric dimers, and by some weak C-H⋯S inter-actions.Entities:
Year: 2009 PMID: 21581888 PMCID: PMC2968376 DOI: 10.1107/S1600536809000440
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N3S2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 69 reflections |
| θ = 6–14° | |
| µ = 0.44 mm−1 | |
| β = 100.88 (1)° | Prism, colourless |
| 0.47 × 0.30 × 0.16 mm | |
| Oxford Diffraction Xcalibur diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 27.6°, θmin = 3.9° |
| graphite | |
| ω–2θ scans | |
| 2735 measured reflections | |
| 2592 independent reflections | 3 standard reflections every 100 reflections |
| 1130 reflections with | intensity decay: 0.1% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2592 reflections | (Δ/σ)max = 0.002 |
| 147 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| N1 | 0.2725 (3) | 0.49647 (12) | 0.6098 (2) | 0.0563 (6) | |
| H1 | 0.1684 | 0.4675 | 0.5868 | 0.068* | |
| N2 | 0.4538 (3) | 0.46832 (13) | 0.6760 (2) | 0.0598 (6) | |
| C3 | 0.5669 (4) | 0.52970 (16) | 0.6930 (3) | 0.0547 (7) | |
| N4 | 0.4644 (3) | 0.59498 (12) | 0.6394 (2) | 0.0504 (5) | |
| C5 | 0.2730 (3) | 0.57271 (16) | 0.5846 (2) | 0.0501 (6) | |
| S1 | 0.08621 (10) | 0.62899 (4) | 0.50362 (7) | 0.0654 (3) | |
| C6 | 0.7818 (4) | 0.52769 (17) | 0.7589 (3) | 0.0703 (8) | |
| H6A | 0.8601 | 0.5469 | 0.6933 | 0.084* | |
| H6B | 0.8205 | 0.4739 | 0.7799 | 0.084* | |
| S2 | 0.7156 (9) | 0.5621 (3) | 1.0253 (6) | 0.0683 (11) | 0.538 (6) |
| C8 | 0.982 (3) | 0.6272 (12) | 0.921 (2) | 0.123 (10) | 0.538 (6) |
| H8 | 1.0760 | 0.6381 | 0.8662 | 0.148* | 0.538 (6) |
| C8' | 0.757 (3) | 0.5727 (13) | 1.003 (2) | 0.079 (9) | 0.462 (6) |
| H8' | 0.6549 | 0.5383 | 1.0138 | 0.094* | 0.462 (6) |
| S2' | 1.0016 (7) | 0.6482 (5) | 0.9087 (7) | 0.0949 (14) | 0.462 (6) |
| C7 | 0.8316 (5) | 0.57473 (19) | 0.8885 (3) | 0.0588 (8) | |
| C9 | 0.9766 (6) | 0.6655 (2) | 1.0589 (5) | 0.1017 (13) | |
| H9 | 1.0536 | 0.7077 | 1.0974 | 0.122* | |
| C10 | 0.8435 (6) | 0.6283 (2) | 1.1134 (3) | 0.0885 (10) | |
| H10 | 0.8241 | 0.6403 | 1.2020 | 0.106* | |
| C11 | 0.5372 (4) | 0.67518 (16) | 0.6362 (3) | 0.0670 (8) | |
| H11A | 0.4782 | 0.6990 | 0.5485 | 0.080* | |
| H11B | 0.6810 | 0.6744 | 0.6425 | 0.080* | |
| C12 | 0.4875 (5) | 0.72417 (17) | 0.7527 (3) | 0.0815 (9) | |
| H12A | 0.5369 | 0.7763 | 0.7462 | 0.098* | |
| H12B | 0.5488 | 0.7017 | 0.8397 | 0.098* | |
| H12C | 0.3452 | 0.7257 | 0.7463 | 0.098* |
| N1 | 0.0502 (12) | 0.0529 (14) | 0.0614 (14) | −0.0035 (10) | −0.0008 (10) | −0.0031 (11) |
| N2 | 0.0522 (13) | 0.0619 (14) | 0.0620 (15) | 0.0057 (11) | 0.0022 (11) | −0.0059 (12) |
| C3 | 0.0486 (15) | 0.0655 (17) | 0.0495 (16) | 0.0044 (14) | 0.0081 (12) | −0.0053 (15) |
| N4 | 0.0448 (12) | 0.0561 (13) | 0.0489 (12) | −0.0051 (11) | 0.0056 (9) | −0.0040 (10) |
| C5 | 0.0512 (15) | 0.0537 (16) | 0.0441 (14) | −0.0029 (12) | 0.0056 (12) | −0.0055 (13) |
| S1 | 0.0578 (4) | 0.0571 (4) | 0.0739 (5) | −0.0009 (3) | −0.0067 (3) | 0.0003 (4) |
| C6 | 0.0456 (16) | 0.088 (2) | 0.075 (2) | 0.0055 (15) | 0.0052 (14) | −0.0120 (17) |
| S2 | 0.070 (2) | 0.0744 (16) | 0.0589 (15) | −0.0131 (15) | 0.0081 (15) | −0.0015 (13) |
| C8 | 0.159 (19) | 0.120 (15) | 0.102 (10) | 0.015 (11) | 0.056 (10) | 0.031 (9) |
| C8' | 0.057 (9) | 0.096 (10) | 0.084 (15) | −0.022 (6) | 0.015 (6) | 0.018 (7) |
| S2' | 0.0717 (17) | 0.110 (3) | 0.097 (3) | −0.0346 (17) | −0.0010 (15) | 0.010 (2) |
| C7 | 0.0398 (15) | 0.0610 (19) | 0.071 (2) | −0.0056 (14) | −0.0015 (15) | 0.0057 (17) |
| C9 | 0.104 (3) | 0.072 (2) | 0.109 (3) | −0.029 (2) | −0.033 (2) | 0.008 (2) |
| C10 | 0.116 (3) | 0.081 (2) | 0.061 (2) | 0.006 (2) | −0.002 (2) | −0.002 (2) |
| C11 | 0.0566 (17) | 0.0687 (19) | 0.0731 (19) | −0.0165 (14) | 0.0055 (14) | 0.0078 (17) |
| C12 | 0.079 (2) | 0.0605 (18) | 0.098 (2) | −0.0082 (15) | −0.0005 (17) | −0.0105 (18) |
| N1—C5 | 1.329 (3) | C8—H8 | 0.9300 |
| N1—N2 | 1.370 (3) | C8'—C7 | 1.32 (2) |
| N1—H1 | 0.8600 | C8'—C10 | 1.48 (2) |
| N2—C3 | 1.295 (3) | C8'—H8' | 0.9300 |
| C3—N4 | 1.370 (3) | S2'—C9 | 1.549 (10) |
| C3—C6 | 1.485 (3) | S2'—C7 | 1.695 (6) |
| N4—C5 | 1.368 (3) | C9—C10 | 1.304 (5) |
| N4—C11 | 1.462 (3) | C9—H9 | 0.9300 |
| C5—S1 | 1.673 (2) | C10—H10 | 0.9300 |
| C6—C7 | 1.493 (4) | C11—C12 | 1.510 (4) |
| C6—H6A | 0.9700 | C11—H11A | 0.9700 |
| C6—H6B | 0.9700 | C11—H11B | 0.9700 |
| S2—C10 | 1.584 (7) | C12—H12A | 0.9600 |
| S2—C7 | 1.699 (6) | C12—H12B | 0.9600 |
| C8—C7 | 1.355 (17) | C12—H12C | 0.9600 |
| C8—C9 | 1.51 (2) | ||
| C5—N1—N2 | 113.6 (2) | C8—C7—C6 | 126.8 (11) |
| C5—N1—H1 | 123.2 | C8'—C7—S2' | 106.5 (10) |
| N2—N1—H1 | 123.2 | C6—C7—S2' | 122.7 (4) |
| C3—N2—N1 | 103.7 (2) | C8—C7—S2 | 110.0 (11) |
| N2—C3—N4 | 111.4 (2) | C6—C7—S2 | 123.0 (3) |
| N2—C3—C6 | 123.4 (2) | S2'—C7—S2 | 114.3 (4) |
| N4—C3—C6 | 125.2 (3) | C10—C9—C8 | 107.1 (7) |
| C5—N4—C3 | 107.7 (2) | C10—C9—S2' | 120.6 (4) |
| C5—N4—C11 | 123.7 (2) | C10—C9—H9 | 126.5 |
| C3—N4—C11 | 128.6 (2) | C8—C9—H9 | 126.5 |
| N1—C5—N4 | 103.6 (2) | S2'—C9—H9 | 112.5 |
| N1—C5—S1 | 128.8 (2) | C9—C10—C8' | 103.1 (8) |
| N4—C5—S1 | 127.6 (2) | C9—C10—S2 | 118.6 (4) |
| C3—C6—C7 | 114.1 (2) | C9—C10—H10 | 120.7 |
| C3—C6—H6A | 108.7 | C8'—C10—H10 | 136.2 |
| C7—C6—H6A | 108.7 | S2—C10—H10 | 120.7 |
| C3—C6—H6B | 108.7 | N4—C11—C12 | 112.3 (2) |
| C7—C6—H6B | 108.7 | N4—C11—H11A | 109.1 |
| H6A—C6—H6B | 107.6 | C12—C11—H11A | 109.1 |
| C10—S2—C7 | 93.0 (4) | N4—C11—H11B | 109.1 |
| C7—C8—C9 | 110.7 (14) | C12—C11—H11B | 109.1 |
| C7—C8—H8 | 124.7 | H11A—C11—H11B | 107.9 |
| C9—C8—H8 | 124.7 | C11—C12—H12A | 109.5 |
| C7—C8'—C10 | 116.3 (13) | C11—C12—H12B | 109.5 |
| C7—C8'—H8' | 121.9 | H12A—C12—H12B | 109.5 |
| C10—C8'—H8' | 121.9 | C11—C12—H12C | 109.5 |
| C9—S2'—C7 | 93.4 (4) | H12A—C12—H12C | 109.5 |
| C8'—C7—C8 | 102.3 (15) | H12B—C12—H12C | 109.5 |
| C8'—C7—C6 | 130.7 (10) | ||
| C5—N1—N2—C3 | 0.8 (3) | C3—C6—C7—S2' | −122.1 (4) |
| N1—N2—C3—N4 | −0.4 (3) | C3—C6—C7—S2 | 54.9 (4) |
| N1—N2—C3—C6 | −178.8 (2) | C9—S2'—C7—C8' | 3.9 (11) |
| N2—C3—N4—C5 | −0.1 (3) | C9—S2'—C7—C8 | −58 (9) |
| C6—C3—N4—C5 | 178.2 (2) | C9—S2'—C7—C6 | −178.6 (3) |
| N2—C3—N4—C11 | −179.4 (2) | C9—S2'—C7—S2 | 4.1 (5) |
| C6—C3—N4—C11 | −1.0 (4) | C10—S2—C7—C8' | −2(9) |
| N2—N1—C5—N4 | −0.9 (3) | C10—S2—C7—C8 | 5.2 (10) |
| N2—N1—C5—S1 | 178.5 (2) | C10—S2—C7—C6 | 179.8 (2) |
| C3—N4—C5—N1 | 0.6 (3) | C10—S2—C7—S2' | −2.9 (4) |
| C11—N4—C5—N1 | 179.9 (2) | C7—C8—C9—C10 | 8.5 (15) |
| C3—N4—C5—S1 | −178.8 (2) | C7—C8—C9—S2' | −145 (4) |
| C11—N4—C5—S1 | 0.5 (3) | C7—S2'—C9—C10 | −4.2 (5) |
| N2—C3—C6—C7 | −117.9 (3) | C7—S2'—C9—C8 | 25 (3) |
| N4—C3—C6—C7 | 63.9 (4) | C8—C9—C10—C8' | −5.0 (13) |
| C10—C8'—C7—C8 | 5(2) | S2'—C9—C10—C8' | 2.8 (11) |
| C10—C8'—C7—C6 | 179.6 (7) | C8—C9—C10—S2 | −4.9 (9) |
| C10—C8'—C7—S2' | −3.2 (19) | S2'—C9—C10—S2 | 2.9 (6) |
| C10—C8'—C7—S2 | 178 (11) | C7—C8'—C10—C9 | 0.6 (19) |
| C9—C8—C7—C8' | −7.5 (18) | C7—C8'—C10—S2 | −179 (6) |
| C9—C8—C7—C6 | 177.2 (6) | C7—S2—C10—C9 | 0.2 (4) |
| C9—C8—C7—S2' | 113 (9) | C7—S2—C10—C8' | 1(4) |
| C9—C8—C7—S2 | −8.4 (15) | C5—N4—C11—C12 | 83.3 (3) |
| C3—C6—C7—C8' | 54.7 (14) | C3—N4—C11—C12 | −97.5 (3) |
| C3—C6—C7—C8 | −131.4 (11) |
| H··· | ||||
| N1—H1···S1i | 0.86 | 2.44 | 3.287 (3) | 169 |
| C6—H6a···S1ii | 0.97 | 2.99 | 3.949 (4) | 172 |
| C9—H9···S1iii | 0.93 | 2.97 | 3.659 (4) | 132 |
| C8'—H8'···S2iv | 0.93 | 3.02 | 3.928 (7) | 166 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯S1i | 0.86 | 2.44 | 3.287 (3) | 169 |
| C6—H6a⋯S1ii | 0.97 | 2.99 | 3.949 (4) | 172 |
| C9—H9⋯S1iii | 0.93 | 2.97 | 3.659 (4) | 132 |
| C8′—H8′⋯S2iv | 0.93 | 3.02 | 3.928 (7) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .