Literature DB >> 21581787

A second modification of poly[diaquadi-μ-citrato(3-)-trizinc(II)].

Xiang-He Li1, Wei-Lin Chen, En-Bo Wang.   

Abstract

A second modification of the zinc(II) coordination polymer with citric acid, [Zn(3)(C(6)H(5)O(7))(2)(H(2)O)(2)](n) or [Zn(citrate)(2)(H(2)O)(2)], has been synthesized under hydro-thermal conditions by reacting zinc acetate with citric acid. The structure contains two unique Zn atoms, one with a distorted octa-hedral coordination and located on an inversion centre, and one with a distorted tetra-hedral coordination. The ZnO(6) and ZnO(4) units are linked into layers extending parallel to (010).

Entities:  

Year:  2009        PMID: 21581787      PMCID: PMC2968354          DOI: 10.1107/S1600536808028456

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the first polymorph, see: Wu (2008 ▶). For general background, see Bourne et al. (2001 ▶); Yaghi et al. (1996 ▶). Biologically relevant transition-metal citrate compounds have bee reported by Liu et al. (2005 ▶) and Xie et al. (2005 ▶).

Experimental

Crystal data

[Zn3(C6H5O7)2(H2O)2] M = 610.34 Triclinic, a = 6.4649 (13) Å b = 7.2666 (15) Å c = 9.6951 (19) Å α = 85.27 (3)° β = 77.31 (3)° γ = 80.99 (3)° V = 438.29 (15) Å3 Z = 1 Mo Kα radiation μ = 4.16 mm−1 T = 298 (2) K 0.28 × 0.26 × 0.22 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan ABSCOR (Higashi, 1995 ▶) T min = 0.389, T max = 0.461 (expected range = 0.337–0.400) 4339 measured reflections 2004 independent reflections 1763 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.066 S = 1.04 2004 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.87 e Å−3 Δρmin = −0.60 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028456/rk2084sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028456/rk2084Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn3(C6H5O7)2(H2O)2]Z = 1
Mr = 610.34F(000) = 304
Triclinic, P1Dx = 2.312 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4649 (13) ÅCell parameters from 2026 reflections
b = 7.2666 (15) Åθ = 3.3–27.5°
c = 9.6951 (19) ŵ = 4.16 mm1
α = 85.27 (3)°T = 298 K
β = 77.31 (3)°Block, yellow
γ = 80.99 (3)°0.28 × 0.26 × 0.22 mm
V = 438.29 (15) Å3
Rigaku R-AXIS RAPID IP diffractometer2004 independent reflections
Radiation source: fine-focus sealed tube1763 reflections with I > 2σ(I)
graphiteRint = 0.029
ω–scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan ABSCOR (Higashi, 1995)h = −8→8
Tmin = 0.389, Tmax = 0.461k = −9→9
4339 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.066H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0291P)2 + 0.3186P] where P = (Fo2 + 2Fc2)/3
2004 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.The highest residual peak, 0.871 e A3, is close to O (1) (with the distance of ca 0.967 A), to C(1) with the distance of ca 1.296 A, but featureless. The deepest hole is -0.604 e A3.
xyzUiso*/Ueq
Zn10.00000.00000.00000.02280 (11)
Zn20.43151 (4)−0.21372 (4)0.32805 (3)0.02389 (10)
C1−0.1926 (4)0.3065 (4)0.4125 (2)0.0263 (5)
C2−0.0112 (4)0.3838 (3)0.3087 (2)0.0220 (5)
H2A0.10330.39240.35690.026*
H2B−0.06240.50870.27560.026*
C30.0768 (3)0.2625 (3)0.1818 (2)0.0179 (4)
C40.2481 (4)0.3533 (3)0.0755 (2)0.0224 (5)
H4A0.19080.48270.05820.027*
H4B0.36980.35270.11890.027*
C50.3282 (4)0.2647 (3)−0.0660 (2)0.0213 (5)
C60.1701 (4)0.0658 (3)0.2287 (2)0.0198 (4)
O1−0.2934 (4)0.1977 (5)0.3701 (2)0.0669 (9)
O2−0.2314 (3)0.3509 (3)0.53876 (18)0.0344 (5)
O30.2747 (3)0.1149 (3)−0.09162 (18)0.0300 (4)
O40.4538 (3)0.3523 (3)−0.15702 (18)0.0300 (4)
O50.2952 (3)0.0518 (3)0.31332 (18)0.0260 (4)
O60.1257 (3)−0.0737 (2)0.17968 (19)0.0324 (4)
O7−0.0943 (3)0.2466 (2)0.11071 (17)0.0210 (3)
O80.6828 (3)−0.1961 (3)0.41525 (19)0.0334 (4)
H20.7285−0.09270.38850.050*
H10.6486−0.20040.50510.050*
H1A−0.191 (6)0.237 (5)0.173 (4)0.049 (11)*
U11U22U33U12U13U23
Zn10.0297 (2)0.0247 (2)0.01762 (18)−0.01201 (16)−0.00723 (15)−0.00034 (15)
Zn20.02577 (16)0.02446 (16)0.01887 (15)−0.00433 (11)0.00168 (10)−0.00202 (11)
C10.0259 (12)0.0329 (13)0.0189 (10)−0.0080 (10)0.0010 (9)−0.0016 (10)
C20.0240 (11)0.0246 (12)0.0160 (10)−0.0050 (9)0.0003 (8)−0.0023 (9)
C30.0198 (10)0.0219 (11)0.0130 (9)−0.0066 (9)−0.0025 (8)−0.0018 (8)
C40.0256 (12)0.0246 (12)0.0168 (10)−0.0103 (9)0.0010 (9)−0.0011 (9)
C50.0185 (11)0.0260 (12)0.0182 (10)−0.0029 (9)−0.0011 (8)−0.0014 (9)
C60.0210 (11)0.0242 (11)0.0140 (9)−0.0064 (9)−0.0011 (8)−0.0010 (9)
O10.0598 (15)0.119 (2)0.0318 (11)−0.0641 (17)0.0145 (10)−0.0292 (14)
O20.0445 (11)0.0434 (11)0.0162 (8)−0.0231 (9)0.0056 (7)−0.0072 (8)
O30.0324 (10)0.0317 (10)0.0256 (9)−0.0144 (8)0.0045 (7)−0.0106 (8)
O40.0338 (10)0.0315 (10)0.0215 (8)−0.0144 (8)0.0094 (7)−0.0056 (7)
O50.0269 (9)0.0278 (9)0.0254 (8)−0.0009 (7)−0.0118 (7)−0.0031 (7)
O60.0510 (12)0.0192 (9)0.0351 (10)−0.0106 (8)−0.0243 (9)0.0041 (7)
O70.0204 (8)0.0277 (9)0.0157 (7)−0.0045 (7)−0.0047 (6)−0.0013 (6)
O80.0377 (11)0.0377 (11)0.0253 (9)−0.0043 (8)−0.0086 (8)−0.0020 (8)
Zn1—O32.0707 (18)C3—O71.449 (3)
Zn1—O3i2.0707 (18)C3—C41.529 (3)
Zn1—O6i2.0768 (18)C3—C61.535 (3)
Zn1—O62.0768 (18)C4—C51.515 (3)
Zn1—O7i2.1029 (18)C4—H4A0.9700
Zn1—O72.1029 (18)C4—H4B0.9700
Zn2—O2ii1.9475 (19)C5—O31.252 (3)
Zn2—O4iii1.9528 (18)C5—O41.264 (3)
Zn2—O51.9992 (19)C6—O61.252 (3)
Zn2—O82.0141 (19)C6—O51.261 (3)
C1—O11.245 (3)O2—Zn2ii1.9475 (19)
C1—O21.254 (3)O4—Zn2iii1.9528 (18)
C1—C21.516 (3)O7—H1A0.78 (4)
C2—C31.526 (3)O8—H20.8500
C2—H2A0.9700O8—H10.8500
C2—H2B0.9700
O3—Zn1—O3i180.00 (9)O7—C3—C2109.47 (18)
O3—Zn1—O6i91.13 (8)O7—C3—C4107.60 (17)
O3i—Zn1—O6i88.87 (8)C2—C3—C4110.10 (18)
O3—Zn1—O688.87 (8)O7—C3—C6108.42 (17)
O3i—Zn1—O691.13 (8)C2—C3—C6110.98 (18)
O6i—Zn1—O6180.00 (11)C4—C3—C6110.19 (19)
O3—Zn1—O7i94.73 (7)C5—C4—C3116.49 (18)
O3i—Zn1—O7i85.27 (7)C5—C4—H4A108.2
O6i—Zn1—O7i78.62 (7)C3—C4—H4A108.2
O6—Zn1—O7i101.38 (7)C5—C4—H4B108.2
O3—Zn1—O785.27 (7)C3—C4—H4B108.2
O3i—Zn1—O794.73 (7)H4A—C4—H4B107.3
O6i—Zn1—O7101.38 (7)O3—C5—O4122.0 (2)
O6—Zn1—O778.62 (7)O3—C5—C4122.6 (2)
O7i—Zn1—O7180.00 (8)O4—C5—C4115.4 (2)
O2ii—Zn2—O4iii109.95 (8)O6—C6—O5122.3 (2)
O2ii—Zn2—O5108.17 (9)O6—C6—C3119.8 (2)
O4iii—Zn2—O5119.97 (8)O5—C6—C3117.8 (2)
O2ii—Zn2—O8108.62 (8)C1—O2—Zn2ii116.04 (16)
O4iii—Zn2—O8106.38 (8)C5—O3—Zn1128.61 (16)
O5—Zn2—O8103.11 (8)C5—O4—Zn2iii111.81 (15)
O1—C1—O2122.6 (2)C6—O5—Zn2108.96 (16)
O1—C1—C2118.9 (2)C6—O6—Zn1111.25 (16)
O2—C1—C2118.5 (2)C3—O7—Zn1106.24 (13)
C1—C2—C3112.11 (19)C3—O7—H1A103 (3)
C1—C2—H2A109.2Zn1—O7—H1A111 (3)
C3—C2—H2A109.2Zn2—O8—H2109.3
C1—C2—H2B109.2Zn2—O8—H1111.9
C3—C2—H2B109.2H2—O8—H1107.6
H2A—C2—H2B107.9
Table 1

Selected bond lengths (Å)

Zn1—O32.0707 (18)
Zn1—O62.0768 (18)
Zn1—O72.1029 (18)
Zn2—O2i1.9475 (19)
Zn2—O4ii1.9528 (18)
Zn2—O51.9992 (19)
Zn2—O82.0141 (19)

Symmetry codes: (i) ; (ii) .

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