Literature DB >> 21202032

Poly[diaqua-di-μ(4)-citrato-trizinc(II)].

Jian Wu1.   

Abstract

The title compound, [Zn(3)(C(6)H(5)O(7))(2)(H(2)O)(2)](n), is a polymer in which the repeating unit contains three zinc atoms, two hepta-dentate Hcit ligands (Hcit = citric acid trianion) and two coordinated water mol-ecules, only half of which are independent due to one of the metal atoms lying on a centre of symmetry. The two independent cations both exhibit an octa-hedral geometry, but the way in which they are coordinate are different; while the Zn atom in a general position is bound to three Hcit ligands and one water mol-ecule, the one at the centre of symmetry is coordinated by six O atoms from two symmetry-related Hcit ligands through the (protonated) hydroxyl and carboxyl-ate groups. The three carboxyl-ate groups coordinate to the Zn centres in three different ways, viz. chelating, bridging and a mixture of both, in an unusual coordination mode for citrate. The result is a two-dimensional structure parallel to (010), built up by a square-grid motif. Intermolecular O-H⋯O hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2008        PMID: 21202032      PMCID: PMC2960923          DOI: 10.1107/S1600536808007642

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Albrecht et al. (2000 ▶); Dybtsev et al. (2004 ▶); Lightfoot & Sueddden (1999 ▶); Ma et al. (2000 ▶); Xie et al. (2004 ▶, 2005 ▶); Yaghi & Li (1996 ▶); Yaghi & Rowsell (2006 ▶); Zhao et al. (2006 ▶); Zou et al. (2006 ▶).

Experimental

Crystal data

[Zn3(C6H5O7)2(H2O)2] M = 610.34 Monoclinic, a = 6.1073 (5) Å b = 15.3132 (12) Å c = 9.7858 (8) Å β = 102.79 (10)° V = 892.48 (12) Å3 Z = 2 Mo Kα radiation μ = 4.09 mm−1 T = 298 (2) K 0.20 × 0.18 × 0.18 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.46, T max = 0.48 4693 measured reflections 1749 independent reflections 1694 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.233 S = 1.36 1648 reflections 143 parameters 1 restraint H-atom parameters constrained Δρmax = 1.18 e Å−3 Δρmin = −1.06 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2004 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007642/bg2172sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007642/bg2172Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn3(C6H5O7)2(H2O)2]F000 = 608
Mr = 610.34Dx = 2.271 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1749 reflections
a = 6.1073 (5) Åθ = 2.5–26.0º
b = 15.3132 (12) ŵ = 4.09 mm1
c = 9.7858 (8) ÅT = 298 (2) K
β = 102.7910 (10)ºBlock, colourless
V = 892.48 (12) Å30.20 × 0.18 × 0.18 mm
Z = 2
Bruker APEXII area-detector diffractometer1749 independent reflections
Radiation source: fine-focus sealed tube1694 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
T = 298(2) Kθmax = 26.0º
φ and ω scanθmin = 2.5º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004)h = −4→7
Tmin = 0.46, Tmax = 0.48k = −18→18
4693 measured reflectionsl = −12→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.233  w = 1/[σ2(Fo2) + (0.160P)2 + 1.0412P] where P = (Fo2 + 2Fc2)/3
S = 1.36(Δ/σ)max < 0.001
1648 reflectionsΔρmax = 1.18 e Å3
143 parametersΔρmin = −1.06 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.021 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Some reflections data are omiited may attributted to their bad reflections.
xyzUiso*/Ueq
Zn10.50000.00001.00000.0150 (5)
Zn20.11561 (9)0.09674 (4)0.31681 (6)0.0129 (5)
O1W−0.1974 (13)0.0915 (4)0.4010 (8)0.0543 (17)
H1WA−0.29080.05420.36860.081*
H1WB−0.17480.08410.48600.081*
O10.3216 (12)0.0872 (4)0.5521 (7)0.0506 (17)
O20.3258 (10)0.2105 (4)0.4410 (7)0.0473 (14)
O30.4296 (10)0.1275 (4)0.8697 (6)0.0427 (13)
H30.38660.17640.88590.064*
O40.8310 (11)0.0722 (5)1.0802 (7)0.0504 (16)
O51.0418 (12)0.1871 (5)1.1333 (7)0.0566 (19)
O60.8360 (11)0.0532 (4)0.6858 (6)0.0471 (15)
O70.6177 (11)−0.0177 (4)0.7974 (7)0.0464 (15)
C10.3868 (13)0.1633 (5)0.5492 (8)0.0383 (17)
C20.5471 (15)0.2027 (5)0.6762 (9)0.0408 (19)
H2A0.47760.25460.70460.049*
H2B0.68250.22100.64780.049*
C30.6146 (12)0.1423 (6)0.8041 (8)0.0349 (17)
C40.8172 (15)0.1853 (6)0.9036 (9)0.0419 (19)
H4A0.94230.18540.85740.050*
H4B0.77930.24580.91680.050*
C50.8961 (12)0.1437 (5)1.0478 (8)0.0356 (16)
C60.6918 (13)0.0533 (5)0.7569 (8)0.0360 (17)
U11U22U33U12U13U23
Zn10.0192 (7)0.0147 (7)0.0113 (7)−0.0059 (3)0.0041 (4)0.0027 (3)
Zn20.0151 (6)0.0123 (6)0.0095 (6)0.0008 (2)−0.0014 (4)0.0000 (2)
O1W0.066 (4)0.056 (4)0.044 (4)−0.001 (3)0.018 (3)−0.004 (3)
O10.061 (4)0.038 (3)0.044 (4)−0.009 (3)−0.008 (3)0.005 (3)
O20.054 (4)0.047 (3)0.036 (3)−0.007 (3)0.000 (3)0.002 (2)
O30.049 (3)0.037 (3)0.042 (3)0.007 (3)0.009 (3)−0.003 (3)
O40.053 (4)0.051 (4)0.043 (4)−0.015 (3)−0.001 (3)0.011 (3)
O50.060 (4)0.055 (4)0.046 (4)−0.012 (3)−0.007 (3)0.008 (3)
O60.048 (3)0.048 (4)0.047 (3)0.001 (3)0.016 (3)−0.002 (3)
O70.059 (4)0.039 (3)0.042 (3)−0.005 (3)0.012 (3)0.003 (3)
C10.039 (4)0.040 (4)0.036 (4)0.006 (3)0.008 (3)0.006 (3)
C20.047 (5)0.033 (4)0.040 (5)−0.003 (3)0.005 (4)−0.001 (3)
C30.035 (4)0.037 (4)0.031 (4)0.002 (3)0.003 (3)0.001 (3)
C40.045 (5)0.041 (4)0.038 (5)−0.006 (3)0.006 (4)−0.003 (3)
C50.035 (4)0.034 (4)0.035 (4)−0.002 (3)0.002 (3)−0.004 (3)
C60.036 (4)0.041 (4)0.029 (4)−0.001 (3)0.003 (3)0.001 (3)
Zn1—O72.270 (6)O3—H30.82
Zn1—O7i2.270 (6)O4—C51.231 (10)
Zn1—O4i2.285 (6)O5—C51.266 (10)
Zn1—O42.285 (6)O5—Zn2iv2.232 (7)
Zn1—O3i2.319 (6)O6—C61.237 (9)
Zn1—O32.319 (6)O6—Zn2iii2.316 (6)
Zn2—O5ii2.232 (7)O7—C61.273 (10)
Zn2—O1W2.244 (7)O7—Zn2iii2.485 (6)
Zn2—O6iii2.316 (6)C1—C21.526 (11)
Zn2—O22.338 (6)C2—C31.538 (11)
Zn2—O12.371 (7)C2—H2A0.9700
Zn2—O7iii2.485 (6)C2—H2B0.9700
O1W—H1WA0.8200C3—C41.543 (11)
O1W—H1WB0.8200C3—C61.546 (11)
O1—C11.233 (10)C4—C51.526 (11)
O2—C11.268 (10)C4—H4A0.9700
O3—C31.435 (9)C4—H4B0.9700
O7—Zn1—O7i180.000 (1)C3—O3—H3105.1
O7—Zn1—O4i94.0 (2)Zn1—O3—H3133.7
O7i—Zn1—O4i86.0 (2)C5—O4—Zn1130.9 (5)
O7—Zn1—O486.0 (2)C5—O5—Zn2iv101.2 (5)
O7i—Zn1—O494.0 (2)C6—O6—Zn2iii96.6 (5)
O4i—Zn1—O4180.0C6—O7—Zn1111.9 (5)
O7—Zn1—O3i108.9 (2)C6—O7—Zn2iii87.8 (5)
O7i—Zn1—O3i71.1 (2)Zn1—O7—Zn2iii144.8 (3)
O4i—Zn1—O3i79.9 (2)O1—C1—O2121.4 (8)
O4—Zn1—O3i100.1 (2)O1—C1—C2120.5 (7)
O7—Zn1—O371.1 (2)O2—C1—C2118.1 (7)
O7i—Zn1—O3108.9 (2)C1—C2—C3115.6 (7)
O4i—Zn1—O3100.1 (2)C1—C2—H2A108.4
O4—Zn1—O379.9 (2)C3—C2—H2A108.4
O3i—Zn1—O3180.000 (1)C1—C2—H2B108.4
O5ii—Zn2—O1W106.3 (3)C3—C2—H2B108.4
O5ii—Zn2—O6iii127.5 (3)H2A—C2—H2B107.4
O1W—Zn2—O6iii95.1 (2)O3—C3—C2111.3 (6)
O5ii—Zn2—O286.9 (2)O3—C3—C4112.7 (6)
O1W—Zn2—O2104.5 (2)C2—C3—C4106.8 (7)
O6iii—Zn2—O2133.4 (2)O3—C3—C6108.5 (6)
O5ii—Zn2—O1142.1 (2)C2—C3—C6109.4 (6)
O1W—Zn2—O187.3 (3)C4—C3—C6108.1 (6)
O6iii—Zn2—O184.7 (2)C5—C4—C3116.7 (7)
O2—Zn2—O155.2 (2)C5—C4—H4A108.1
O5ii—Zn2—O7iii88.6 (3)C3—C4—H4A108.1
O1W—Zn2—O7iii147.6 (2)C5—C4—H4B108.1
O6iii—Zn2—O7iii54.1 (2)C3—C4—H4B108.1
O2—Zn2—O7iii104.9 (2)H4A—C4—H4B107.3
O1—Zn2—O7iii98.5 (2)O4—C5—O5121.1 (7)
Zn2—O1W—H1WA117.3O4—C5—C4123.8 (7)
Zn2—O1W—H1WB114.3O5—C5—C4115.1 (7)
H1WA—O1W—H1WB104.0O6—C6—O7121.4 (8)
C1—O1—Zn291.4 (5)O6—C6—C3118.1 (7)
C1—O2—Zn292.0 (5)O7—C6—C3120.4 (7)
C3—O3—Zn1108.1 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2v0.821.882.691 (8)172
O1W—H1WA···O7vi0.822.353.071 (10)148
O1W—H1WB···O6vii0.822.002.811 (10)171
Table 1

Selected bond lengths (Å)

Zn1—O72.270 (6)
Zn1—O42.285 (6)
Zn1—O32.319 (6)
Zn2—O5i2.232 (7)
Zn2—O1W2.244 (7)
Zn2—O6ii2.316 (6)
Zn2—O22.338 (6)
Zn2—O12.371 (7)
Zn2—O7ii2.485 (6)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2iii0.821.882.691 (8)172
O1W—H1WA⋯O7iv0.822.353.071 (10)148
O1W—H1WB⋯O6v0.822.002.811 (10)171

Symmetry codes: (iii) ; (iv) ; (v) .

  6 in total

1.  From Cubane to Supercubane: The Design, Synthesis, and Structure of a Three-Dimensional Open Framework Based on a Ln(4)O(4) Cluster This work was supported by the National Natural Science Foundation of China (No. 29771001, 29831010), National Key Project for Fundamental Research (G1998061306), and the Excellent Young Teachers Fund of MOE, P.R. China.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-10-16       Impact factor: 15.336

2.  Organoplatinum crystals for gas-triggered switches

Authors: 
Journal:  Nature       Date:  2000-08-31       Impact factor: 49.962

3.  Effects of functionalization, catenation, and variation of the metal oxide and organic linking units on the low-pressure hydrogen adsorption properties of metal-organic frameworks.

Authors:  Jesse L C Rowsell; Omar M Yaghi
Journal:  J Am Chem Soc       Date:  2006-02-01       Impact factor: 15.419

4.  Preparation, adsorption properties, and catalytic activity of 3D porous metal-organic frameworks composed of cubic building blocks and alkali-metal ions.

Authors:  Ru-Qiang Zou; Hiroaki Sakurai; Qiang Xu
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-10       Impact factor: 15.336

5.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

6.  Microporous manganese formate: a simple metal-organic porous material with high framework stability and highly selective gas sorption properties.

Authors:  Danil N Dybtsev; Hyungphil Chun; Sun Hong Yoon; Dongwoo Kim; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

  6 in total
  2 in total

1.  A second modification of poly[diaquadi-μ-citrato(3-)-trizinc(II)].

Authors:  Xiang-He Li; Wei-Lin Chen; En-Bo Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14

2.  Evaluation of Insulin-Like Activity of Novel Zinc Metal-Organics toward Adipogenesis Signaling.

Authors:  Catherine Gabriel; Olga Tsave; Maria P Yavropoulou; Theodore Architektonidis; Catherine P Raptopoulou; Vassilis Psycharis; Athanasios Salifoglou
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.