Literature DB >> 21581755

Bis{benzyl N'-[(1H-indol-3-yl)methyl-ene]dithio-carbazato-κN',S}copper(II) N,N-dimethyl-formamide disolvate.

Hamid Khaledi1, Hapipah Mohd Ali, Seik Weng Ng.   

Abstract

In the structure of [Cu(C(17)H(14)N(3)S(2))(2)]·2C(3)H(7)NO, the Cu atom (site symmetry ) is N,S-chelated by the two deprotonated Schiff-base anions that define a distorted square-planar geometry. An N-H⋯O hydrogen bond links the mononuclear complex to the DMF solvent mol-ecules.

Entities:  

Year:  2009        PMID: 21581755      PMCID: PMC2968278          DOI: 10.1107/S1600536808043808

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the Schiff base ligand, see: Khaledi et al. (2008b ▶). For the isostructural nickel analog, see: Khaledi et al. (2008a ▶).

Experimental

Crystal data

[Cu(C17H14N3S2)2]·2C3H7NO M = 858.60 Monoclinic, a = 10.4461 (2) Å b = 20.0882 (3) Å c = 10.8333 (2) Å β = 118.366 (1)° V = 2000.34 (6) Å3 Z = 2 Mo Kα radiation μ = 0.80 mm−1 T = 100 (2) K 0.25 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.825, T max = 0.961 18600 measured reflections 4594 independent reflections 3837 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.081 S = 1.04 4594 reflections 256 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808043808/tk2349sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043808/tk2349Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C17H14N3S2)2]·2C3H7NOZ = 2
Mr = 858.60F(000) = 894
Monoclinic, P21/cDx = 1.425 Mg m3
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.4461 (2) ŵ = 0.80 mm1
b = 20.0882 (3) ÅT = 100 K
c = 10.8333 (2) ÅIrregular block, brown
β = 118.366 (1)°0.25 × 0.15 × 0.05 mm
V = 2000.34 (6) Å3
Bruker SMART APEX diffractometer4594 independent reflections
Radiation source: fine-focus sealed tube3837 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.825, Tmax = 0.961k = −25→26
18600 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0382P)2 + 0.7321P] where P = (Fo2 + 2Fc2)/3
4594 reflections(Δ/σ)max = 0.001
256 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.36 e Å3
xyzUiso*/Ueq
Cu10.50000.50000.50000.01678 (8)
O10.8350 (2)0.56467 (8)−0.10421 (17)0.0526 (5)
S10.51561 (5)0.61250 (2)0.51610 (5)0.02414 (11)
S20.61468 (5)0.70543 (2)0.37409 (5)0.02345 (11)
N10.60380 (15)0.57545 (7)0.32793 (14)0.0191 (3)
N20.56823 (15)0.51211 (7)0.35752 (15)0.0193 (3)
N30.72111 (17)0.49444 (7)0.03797 (16)0.0234 (3)
H3N0.756 (3)0.5192 (11)−0.006 (2)0.040 (6)*
N40.91692 (17)0.57480 (8)−0.26314 (16)0.0267 (3)
C10.81749 (19)0.68443 (8)0.27140 (19)0.0223 (4)
C20.9316 (2)0.68264 (9)0.4074 (2)0.0282 (4)
H20.91490.69370.48380.034*
C31.0699 (2)0.66472 (10)0.4321 (2)0.0338 (4)
H31.14690.66280.52580.041*
C41.0974 (2)0.64964 (10)0.3226 (2)0.0340 (5)
H41.19260.63760.34060.041*
C50.9852 (2)0.65223 (10)0.1870 (2)0.0315 (4)
H51.00300.64230.11080.038*
C60.8463 (2)0.66931 (9)0.1618 (2)0.0261 (4)
H60.76950.67070.06800.031*
C70.6635 (2)0.70369 (9)0.23471 (19)0.0245 (4)
H7A0.59680.67240.16200.029*
H7B0.64460.74850.19150.029*
C80.58034 (17)0.62208 (8)0.39595 (17)0.0188 (3)
C90.58804 (18)0.46384 (8)0.28764 (18)0.0204 (3)
H90.56410.42090.30710.024*
C100.63940 (18)0.46470 (8)0.18750 (17)0.0201 (3)
C110.68033 (19)0.51762 (9)0.13067 (19)0.0229 (4)
H110.67960.56320.15380.027*
C120.65845 (18)0.40510 (8)0.12243 (17)0.0196 (3)
C130.63965 (19)0.33709 (9)0.13551 (18)0.0234 (4)
H130.60620.32160.19800.028*
C140.6707 (2)0.29284 (9)0.0556 (2)0.0276 (4)
H140.65950.24640.06450.033*
C150.7185 (2)0.31520 (9)−0.0383 (2)0.0285 (4)
H150.73800.2837−0.09260.034*
C160.73753 (19)0.38186 (9)−0.05314 (18)0.0250 (4)
H160.76900.3972−0.11730.030*
C170.70879 (18)0.42596 (9)0.02967 (18)0.0211 (3)
C180.8710 (3)0.54041 (11)−0.1878 (2)0.0395 (5)
H180.86520.4934−0.19890.047*
C190.9269 (2)0.64686 (9)−0.2527 (2)0.0294 (4)
H19A0.92230.6613−0.16850.044*
H19B0.84600.6666−0.33580.044*
H19C1.01930.6613−0.24670.044*
C200.9516 (2)0.54244 (10)−0.3636 (2)0.0314 (4)
H20A0.94410.4941−0.35730.047*
H20B1.05100.5541−0.34270.047*
H20C0.88320.5573−0.45870.047*
U11U22U33U12U13U23
Cu10.01726 (15)0.01781 (15)0.01939 (15)0.00000 (11)0.01205 (12)0.00001 (11)
O10.0872 (13)0.0476 (10)0.0468 (9)−0.0192 (9)0.0511 (10)−0.0044 (7)
S10.0345 (3)0.0189 (2)0.0316 (2)−0.00003 (17)0.0260 (2)−0.00067 (17)
S20.0308 (2)0.0175 (2)0.0305 (2)0.00151 (17)0.0214 (2)0.00143 (17)
N10.0217 (7)0.0178 (7)0.0208 (7)−0.0002 (5)0.0126 (6)0.0020 (6)
N20.0222 (7)0.0179 (7)0.0214 (7)−0.0007 (5)0.0134 (6)0.0007 (5)
N30.0284 (8)0.0236 (8)0.0266 (8)0.0016 (6)0.0198 (7)0.0027 (6)
N40.0282 (8)0.0283 (8)0.0251 (8)−0.0006 (6)0.0138 (7)0.0045 (6)
C10.0268 (9)0.0148 (8)0.0302 (9)−0.0002 (7)0.0175 (8)0.0050 (7)
C20.0309 (10)0.0290 (10)0.0281 (9)−0.0024 (8)0.0168 (8)0.0022 (8)
C30.0247 (10)0.0349 (11)0.0346 (11)−0.0042 (8)0.0082 (9)0.0018 (9)
C40.0256 (10)0.0290 (10)0.0506 (13)−0.0022 (8)0.0207 (10)−0.0036 (9)
C50.0329 (11)0.0303 (10)0.0405 (11)−0.0016 (8)0.0249 (10)−0.0031 (8)
C60.0285 (9)0.0252 (9)0.0290 (9)−0.0006 (7)0.0172 (8)0.0027 (7)
C70.0291 (9)0.0236 (9)0.0274 (9)0.0054 (7)0.0187 (8)0.0081 (7)
C80.0158 (8)0.0215 (8)0.0196 (8)0.0016 (6)0.0090 (7)0.0025 (6)
C90.0223 (9)0.0182 (8)0.0240 (9)−0.0011 (6)0.0137 (7)−0.0003 (7)
C100.0214 (8)0.0197 (8)0.0212 (8)−0.0004 (6)0.0118 (7)−0.0010 (7)
C110.0262 (9)0.0219 (8)0.0272 (9)0.0022 (7)0.0182 (8)0.0003 (7)
C120.0178 (8)0.0226 (8)0.0197 (8)0.0000 (6)0.0100 (7)−0.0026 (7)
C130.0223 (9)0.0239 (9)0.0259 (9)−0.0034 (7)0.0129 (8)−0.0027 (7)
C140.0238 (9)0.0227 (9)0.0355 (10)−0.0022 (7)0.0135 (8)−0.0060 (8)
C150.0254 (9)0.0303 (10)0.0310 (10)0.0022 (8)0.0143 (8)−0.0098 (8)
C160.0223 (9)0.0340 (10)0.0220 (9)0.0023 (7)0.0131 (8)−0.0034 (7)
C170.0192 (8)0.0237 (9)0.0210 (8)0.0025 (7)0.0101 (7)−0.0001 (7)
C180.0543 (14)0.0337 (11)0.0362 (11)−0.0107 (10)0.0262 (11)0.0016 (9)
C190.0338 (11)0.0283 (10)0.0271 (10)−0.0031 (8)0.0154 (9)0.0030 (8)
C200.0308 (10)0.0354 (11)0.0312 (10)0.0037 (8)0.0173 (9)0.0028 (8)
Cu1—N21.9987 (14)C5—H50.9500
Cu1—N2i1.9987 (14)C6—H60.9500
Cu1—S12.2666 (4)C7—H7A0.9900
Cu1—S1i2.2666 (4)C7—H7B0.9900
O1—C181.234 (3)C9—C101.421 (2)
S1—C81.7392 (17)C9—H90.9500
S2—C81.7519 (17)C10—C111.394 (2)
S2—C71.8092 (17)C10—C121.450 (2)
N1—C81.285 (2)C11—H110.9500
N1—N21.4048 (18)C12—C171.401 (2)
N2—C91.306 (2)C12—C131.397 (2)
N3—C111.347 (2)C13—C141.382 (2)
N3—C171.381 (2)C13—H130.9500
N3—H3N0.88 (2)C14—C151.403 (3)
N4—C181.321 (2)C14—H140.9500
N4—C191.452 (2)C15—C161.374 (3)
N4—C201.454 (2)C15—H150.9500
C1—C61.390 (2)C16—C171.391 (2)
C1—C21.387 (3)C16—H160.9500
C1—C71.512 (2)C18—H180.9500
C2—C31.386 (3)C19—H19A0.9800
C2—H20.9500C19—H19B0.9800
C3—C41.380 (3)C19—H19C0.9800
C3—H30.9500C20—H20A0.9800
C4—C51.378 (3)C20—H20B0.9800
C4—H40.9500C20—H20C0.9800
C5—C61.386 (3)
N2—Cu1—N2i180.000 (1)S1—C8—S2112.60 (9)
N2—Cu1—S184.21 (4)N2—C9—C10130.93 (16)
N2i—Cu1—S195.79 (4)N2—C9—H9114.5
N2—Cu1—S1i95.79 (4)C10—C9—H9114.5
N2i—Cu1—S1i84.21 (4)C11—C10—C9130.77 (16)
S1—Cu1—S1i180.0C11—C10—C12105.86 (15)
C8—S1—Cu195.28 (6)C9—C10—C12123.36 (15)
C8—S2—C7104.55 (8)N3—C11—C10109.74 (15)
C8—N1—N2112.72 (13)N3—C11—H11125.1
C9—N2—N1114.11 (14)C10—C11—H11125.1
C9—N2—Cu1124.77 (12)C17—C12—C13118.93 (15)
N1—N2—Cu1121.10 (10)C17—C12—C10106.66 (15)
C11—N3—C17109.91 (15)C13—C12—C10134.40 (16)
C11—N3—H3N124.5 (15)C14—C13—C12118.64 (16)
C17—N3—H3N125.5 (15)C14—C13—H13120.7
C18—N4—C19120.47 (17)C12—C13—H13120.7
C18—N4—C20121.44 (17)C13—C14—C15121.20 (17)
C19—N4—C20118.02 (15)C13—C14—H14119.4
C6—C1—C2118.43 (17)C15—C14—H14119.4
C6—C1—C7117.81 (16)C16—C15—C14121.23 (17)
C2—C1—C7123.75 (16)C16—C15—H15119.4
C3—C2—C1120.16 (18)C14—C15—H15119.4
C3—C2—H2119.9C15—C16—C17117.19 (17)
C1—C2—H2119.9C15—C16—H16121.4
C4—C3—C2120.95 (18)C17—C16—H16121.4
C4—C3—H3119.5N3—C17—C16129.38 (16)
C2—C3—H3119.5N3—C17—C12107.84 (14)
C3—C4—C5119.34 (18)C16—C17—C12122.79 (16)
C3—C4—H4120.3O1—C18—N4125.0 (2)
C5—C4—H4120.3O1—C18—H18117.5
C4—C5—C6119.94 (18)N4—C18—H18117.5
C4—C5—H5120.0N4—C19—H19A109.5
C6—C5—H5120.0N4—C19—H19B109.5
C5—C6—C1121.17 (18)H19A—C19—H19B109.5
C5—C6—H6119.4N4—C19—H19C109.5
C1—C6—H6119.4H19A—C19—H19C109.5
C1—C7—S2118.16 (12)H19B—C19—H19C109.5
C1—C7—H7A107.8N4—C20—H20A109.5
S2—C7—H7A107.8N4—C20—H20B109.5
C1—C7—H7B107.8H20A—C20—H20B109.5
S2—C7—H7B107.8N4—C20—H20C109.5
H7A—C7—H7B107.1H20A—C20—H20C109.5
N1—C8—S1126.61 (13)H20B—C20—H20C109.5
N1—C8—S2120.80 (13)
N2—Cu1—S1—C8−1.75 (7)Cu1—N2—C9—C10−177.95 (14)
N2i—Cu1—S1—C8178.25 (7)N2—C9—C10—C11−2.0 (3)
C8—N1—N2—C9178.63 (15)N2—C9—C10—C12178.22 (17)
C8—N1—N2—Cu1−3.25 (19)C17—N3—C11—C100.1 (2)
S1—Cu1—N2—C9−179.02 (14)C9—C10—C11—N3−179.57 (17)
S1i—Cu1—N2—C90.98 (14)C12—C10—C11—N30.2 (2)
S1—Cu1—N2—N13.07 (11)C11—C10—C12—C17−0.39 (19)
S1i—Cu1—N2—N1−176.93 (11)C9—C10—C12—C17179.40 (15)
C6—C1—C2—C3−1.4 (3)C11—C10—C12—C13178.57 (19)
C7—C1—C2—C3−179.70 (17)C9—C10—C12—C13−1.6 (3)
C1—C2—C3—C41.2 (3)C17—C12—C13—C14−0.4 (2)
C2—C3—C4—C5−0.3 (3)C10—C12—C13—C14−179.23 (18)
C3—C4—C5—C6−0.5 (3)C12—C13—C14—C15−0.8 (3)
C4—C5—C6—C10.4 (3)C13—C14—C15—C160.7 (3)
C2—C1—C6—C50.6 (3)C14—C15—C16—C170.6 (3)
C7—C1—C6—C5179.01 (16)C11—N3—C17—C16179.22 (18)
C6—C1—C7—S2166.51 (13)C11—N3—C17—C12−0.3 (2)
C2—C1—C7—S2−15.1 (2)C15—C16—C17—N3178.73 (17)
C8—S2—C7—C1−80.69 (15)C15—C16—C17—C12−1.8 (3)
N2—N1—C8—S11.3 (2)C13—C12—C17—N3−178.72 (15)
N2—N1—C8—S2−179.21 (11)C10—C12—C17—N30.43 (18)
Cu1—S1—C8—N10.81 (16)C13—C12—C17—C161.7 (3)
Cu1—S1—C8—S2−178.73 (8)C10—C12—C17—C16−179.15 (16)
C7—S2—C8—N15.62 (16)C19—N4—C18—O1−0.7 (3)
C7—S2—C8—S1−174.81 (9)C20—N4—C18—O1−177.5 (2)
N1—N2—C9—C100.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O10.88 (2)1.87 (2)2.742 (2)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O10.88 (2)1.87 (2)2.742 (2)175 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis[benzyl N'-(1H-indol-3-ylmethyl-ene)hydrazinecarbodithio-ato-κN',S]nickel(II) N,N-dimethyl-formamide disolvate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-26

3.  Benzyl N'-(1H-indol-3-ylmethyl-idene)-hydrazinecarbodithio-ate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11
  3 in total
  1 in total

1.  Bis{benzyl 3-[(1H-indol-3-yl)methyl-idene]dithio-carbazato-κN,S}palladium(II) N,N-dimethyl-formamide disolvate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15
  1 in total

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