| Literature DB >> 21522600 |
Hamid Khaledi1, Hapipah Mohd Ali.
Abstract
In the title compound, [Pd(C(17)H(14)N(3)S(2))(2)]·2C(3)H(7)NO, the deprotonated Schiff base ligand acts as an N,S-bidentate chelate, forming a five-membered ring with the metal atom. The Pd(II) ion, located on an inversion center, is four-coordinated by two of the Schiff base ligands in a square-planar geometry. In the crystal, the indolic NH groups are bonded to the dimethyl-formamide (DMF) solvent mol-ecules via an N-H⋯O inter-action. In addition, C-H⋯S inter-actions are observed.Entities:
Year: 2010 PMID: 21522600 PMCID: PMC3050367 DOI: 10.1107/S1600536810051780
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Pd(C17H14N3S2)2]·2C3H7NO | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3977 reflections |
| θ = 2.3–29.4° | |
| µ = 0.70 mm−1 | |
| β = 117.577 (5)° | Plate, red |
| 0.30 × 0.15 × 0.03 mm | |
| Bruker APEXII CCD diffractometer | 4486 independent reflections |
| Radiation source: fine-focus sealed tube | 3411 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 11353 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4486 reflections | (Δ/σ)max = 0.001 |
| 255 parameters | Δρmax = 0.27 e Å−3 |
| 1 restraint | Δρmin = −0.31 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.5000 | 0.5000 | 1.0000 | 0.03881 (8) | |
| S1 | 0.50770 (7) | 0.38703 (3) | 1.00654 (7) | 0.05372 (16) | |
| S2 | 0.60819 (8) | 0.29517 (3) | 0.86690 (7) | 0.05937 (18) | |
| N1 | 0.7185 (2) | 0.50542 (10) | 0.5369 (2) | 0.0550 (5) | |
| H1N | 0.753 (3) | 0.4818 (12) | 0.496 (3) | 0.066* | |
| N2 | 0.56951 (19) | 0.48716 (8) | 0.85694 (19) | 0.0422 (4) | |
| N3 | 0.60342 (19) | 0.42432 (8) | 0.82622 (19) | 0.0438 (4) | |
| C1 | 0.6788 (3) | 0.48235 (11) | 0.6292 (3) | 0.0517 (6) | |
| H1 | 0.6771 | 0.4381 | 0.6505 | 0.062* | |
| C2 | 0.6405 (2) | 0.53413 (10) | 0.6881 (2) | 0.0438 (5) | |
| C3 | 0.6598 (2) | 0.59335 (10) | 0.6243 (2) | 0.0434 (5) | |
| C4 | 0.6429 (3) | 0.66054 (11) | 0.6388 (3) | 0.0547 (6) | |
| H4 | 0.6111 | 0.6755 | 0.7005 | 0.066* | |
| C5 | 0.6739 (3) | 0.70436 (13) | 0.5604 (3) | 0.0667 (7) | |
| H5 | 0.6642 | 0.7493 | 0.5703 | 0.080* | |
| C6 | 0.7198 (3) | 0.68253 (13) | 0.4660 (3) | 0.0692 (8) | |
| H6 | 0.7388 | 0.7132 | 0.4134 | 0.083* | |
| C7 | 0.7374 (3) | 0.61730 (13) | 0.4495 (3) | 0.0595 (6) | |
| H7 | 0.7678 | 0.6029 | 0.3865 | 0.071* | |
| C8 | 0.7080 (2) | 0.57292 (11) | 0.5304 (2) | 0.0479 (5) | |
| C9 | 0.5902 (2) | 0.53485 (11) | 0.7881 (2) | 0.0449 (5) | |
| H9 | 0.5681 | 0.5765 | 0.8081 | 0.054* | |
| C10 | 0.5759 (2) | 0.37785 (10) | 0.8902 (2) | 0.0424 (5) | |
| C11 | 0.6598 (3) | 0.29661 (12) | 0.7301 (3) | 0.0587 (6) | |
| H11A | 0.6411 | 0.2533 | 0.6880 | 0.070* | |
| H11B | 0.5969 | 0.3273 | 0.6602 | 0.070* | |
| C12 | 0.8120 (3) | 0.31475 (10) | 0.7668 (3) | 0.0514 (6) | |
| C13 | 0.8432 (3) | 0.32943 (13) | 0.6598 (3) | 0.0641 (7) | |
| H13 | 0.7699 | 0.3284 | 0.5694 | 0.077* | |
| C14 | 0.9801 (3) | 0.34555 (15) | 0.6844 (4) | 0.0792 (9) | |
| H14 | 0.9987 | 0.3548 | 0.6108 | 0.095* | |
| C15 | 1.0875 (3) | 0.34793 (16) | 0.8149 (4) | 0.0858 (10) | |
| H15 | 1.1798 | 0.3595 | 0.8316 | 0.103* | |
| C16 | 1.0600 (3) | 0.33329 (16) | 0.9226 (4) | 0.0884 (10) | |
| H16 | 1.1340 | 0.3348 | 1.0126 | 0.106* | |
| C17 | 0.9222 (3) | 0.31618 (14) | 0.8987 (3) | 0.0706 (7) | |
| H17 | 0.9050 | 0.3057 | 0.9726 | 0.085* | |
| O1 | 0.8241 (4) | 0.43495 (13) | 0.3888 (3) | 0.1248 (10) | |
| N4 | 0.9096 (2) | 0.42640 (11) | 0.2347 (2) | 0.0634 (6) | |
| C18 | 0.8601 (4) | 0.45922 (17) | 0.3077 (4) | 0.0946 (11) | |
| H18 | 0.8520 | 0.5046 | 0.2964 | 0.113* | |
| C19 | 0.9457 (3) | 0.45852 (16) | 0.1364 (3) | 0.0827 (9) | |
| H19A | 0.9369 | 0.5053 | 0.1420 | 0.124* | |
| H19B | 0.8815 | 0.4438 | 0.0448 | 0.124* | |
| H19C | 1.0426 | 0.4477 | 0.1574 | 0.124* | |
| C20 | 0.9206 (3) | 0.35570 (14) | 0.2455 (3) | 0.0785 (8) | |
| H20A | 0.9153 | 0.3418 | 0.3269 | 0.118* | |
| H20B | 1.0106 | 0.3420 | 0.2511 | 0.118* | |
| H20C | 0.8432 | 0.3363 | 0.1656 | 0.118* |
| Pd1 | 0.04047 (13) | 0.04106 (13) | 0.04411 (14) | 0.00056 (10) | 0.02740 (11) | 0.00044 (11) |
| S1 | 0.0737 (4) | 0.0436 (3) | 0.0685 (4) | −0.0004 (3) | 0.0537 (4) | 0.0015 (3) |
| S2 | 0.0807 (4) | 0.0410 (3) | 0.0797 (5) | −0.0021 (3) | 0.0569 (4) | −0.0023 (3) |
| N1 | 0.0705 (13) | 0.0540 (12) | 0.0608 (13) | −0.0030 (10) | 0.0477 (11) | −0.0044 (10) |
| N2 | 0.0469 (10) | 0.0428 (10) | 0.0467 (10) | 0.0017 (7) | 0.0301 (9) | −0.0002 (8) |
| N3 | 0.0503 (10) | 0.0407 (9) | 0.0511 (11) | 0.0002 (8) | 0.0325 (9) | −0.0031 (8) |
| C1 | 0.0656 (15) | 0.0462 (12) | 0.0603 (15) | −0.0024 (11) | 0.0434 (13) | 0.0003 (11) |
| C2 | 0.0495 (12) | 0.0444 (12) | 0.0480 (13) | 0.0014 (10) | 0.0314 (11) | 0.0026 (10) |
| C3 | 0.0426 (11) | 0.0470 (12) | 0.0466 (12) | 0.0015 (10) | 0.0257 (10) | 0.0046 (10) |
| C4 | 0.0573 (14) | 0.0507 (13) | 0.0664 (16) | 0.0053 (11) | 0.0374 (13) | 0.0056 (12) |
| C5 | 0.0681 (17) | 0.0505 (14) | 0.089 (2) | 0.0026 (12) | 0.0431 (16) | 0.0135 (14) |
| C6 | 0.0660 (17) | 0.0691 (17) | 0.082 (2) | −0.0025 (13) | 0.0426 (16) | 0.0267 (15) |
| C7 | 0.0599 (15) | 0.0741 (17) | 0.0586 (16) | −0.0024 (13) | 0.0394 (13) | 0.0115 (13) |
| C8 | 0.0475 (12) | 0.0546 (13) | 0.0490 (13) | −0.0030 (10) | 0.0287 (11) | 0.0032 (11) |
| C9 | 0.0513 (13) | 0.0404 (11) | 0.0528 (14) | 0.0030 (10) | 0.0323 (12) | 0.0018 (10) |
| C10 | 0.0432 (11) | 0.0430 (11) | 0.0487 (13) | −0.0026 (9) | 0.0278 (11) | −0.0040 (10) |
| C11 | 0.0702 (16) | 0.0537 (14) | 0.0667 (16) | −0.0089 (12) | 0.0440 (14) | −0.0186 (12) |
| C12 | 0.0610 (15) | 0.0404 (11) | 0.0645 (16) | 0.0026 (10) | 0.0389 (14) | −0.0099 (11) |
| C13 | 0.0680 (17) | 0.0654 (16) | 0.0694 (17) | 0.0005 (13) | 0.0409 (15) | −0.0041 (14) |
| C14 | 0.076 (2) | 0.082 (2) | 0.101 (3) | 0.0005 (17) | 0.059 (2) | 0.0081 (19) |
| C15 | 0.0625 (19) | 0.082 (2) | 0.122 (3) | 0.0053 (16) | 0.050 (2) | 0.009 (2) |
| C16 | 0.0637 (19) | 0.095 (2) | 0.089 (2) | 0.0093 (17) | 0.0210 (18) | −0.0057 (19) |
| C17 | 0.0734 (19) | 0.0774 (18) | 0.0687 (19) | 0.0053 (15) | 0.0393 (17) | −0.0040 (15) |
| O1 | 0.202 (3) | 0.120 (2) | 0.1058 (19) | 0.0498 (19) | 0.116 (2) | 0.0098 (16) |
| N4 | 0.0643 (13) | 0.0729 (14) | 0.0570 (13) | 0.0028 (11) | 0.0315 (12) | −0.0111 (11) |
| C18 | 0.136 (3) | 0.080 (2) | 0.086 (2) | 0.026 (2) | 0.067 (2) | −0.0029 (19) |
| C19 | 0.079 (2) | 0.095 (2) | 0.083 (2) | −0.0068 (17) | 0.0451 (19) | −0.0070 (18) |
| C20 | 0.090 (2) | 0.0727 (19) | 0.073 (2) | 0.0108 (16) | 0.0386 (18) | −0.0092 (16) |
| Pd1—N2i | 2.0252 (18) | C9—H9 | 0.9300 |
| Pd1—N2 | 2.0252 (18) | C11—C12 | 1.505 (3) |
| Pd1—S1 | 2.2969 (10) | C11—H11A | 0.9700 |
| Pd1—S1i | 2.2969 (10) | C11—H11B | 0.9700 |
| S1—C10 | 1.735 (2) | C12—C17 | 1.369 (4) |
| S2—C10 | 1.755 (2) | C12—C13 | 1.384 (3) |
| S2—C11 | 1.810 (2) | C13—C14 | 1.376 (4) |
| N1—C1 | 1.342 (3) | C13—H13 | 0.9300 |
| N1—C8 | 1.375 (3) | C14—C15 | 1.349 (4) |
| N1—H1N | 0.840 (16) | C14—H14 | 0.9300 |
| N2—C9 | 1.305 (3) | C15—C16 | 1.368 (4) |
| N2—N3 | 1.407 (2) | C15—H15 | 0.9300 |
| N3—C10 | 1.285 (3) | C16—C17 | 1.391 (4) |
| C1—C2 | 1.387 (3) | C16—H16 | 0.9300 |
| C1—H1 | 0.9300 | C17—H17 | 0.9300 |
| C2—C9 | 1.417 (3) | O1—C18 | 1.218 (4) |
| C2—C3 | 1.451 (3) | N4—C18 | 1.317 (4) |
| C3—C4 | 1.395 (3) | N4—C20 | 1.442 (3) |
| C3—C8 | 1.401 (3) | N4—C19 | 1.449 (4) |
| C4—C5 | 1.375 (3) | C18—H18 | 0.9300 |
| C4—H4 | 0.9300 | C19—H19A | 0.9600 |
| C5—C6 | 1.398 (4) | C19—H19B | 0.9600 |
| C5—H5 | 0.9300 | C19—H19C | 0.9600 |
| C6—C7 | 1.362 (4) | C20—H20A | 0.9600 |
| C6—H6 | 0.9300 | C20—H20B | 0.9600 |
| C7—C8 | 1.394 (3) | C20—H20C | 0.9600 |
| C7—H7 | 0.9300 | ||
| N2i—Pd1—N2 | 179.999 (1) | S1—C10—S2 | 112.47 (12) |
| N2i—Pd1—S1 | 97.17 (5) | C12—C11—S2 | 118.18 (19) |
| N2—Pd1—S1 | 82.83 (5) | C12—C11—H11A | 107.8 |
| N2i—Pd1—S1i | 82.83 (5) | S2—C11—H11A | 107.8 |
| N2—Pd1—S1i | 97.17 (5) | C12—C11—H11B | 107.8 |
| S1—Pd1—S1i | 180.0 | S2—C11—H11B | 107.8 |
| C10—S1—Pd1 | 96.04 (7) | H11A—C11—H11B | 107.1 |
| C10—S2—C11 | 104.82 (11) | C17—C12—C13 | 118.0 (2) |
| C1—N1—C8 | 109.95 (19) | C17—C12—C11 | 124.2 (2) |
| C1—N1—H1N | 123.9 (19) | C13—C12—C11 | 117.8 (2) |
| C8—N1—H1N | 125.9 (19) | C14—C13—C12 | 121.4 (3) |
| C9—N2—N3 | 114.08 (17) | C14—C13—H13 | 119.3 |
| C9—N2—Pd1 | 124.40 (15) | C12—C13—H13 | 119.3 |
| N3—N2—Pd1 | 121.50 (12) | C15—C14—C13 | 120.2 (3) |
| C10—N3—N2 | 113.06 (17) | C15—C14—H14 | 119.9 |
| N1—C1—C2 | 110.0 (2) | C13—C14—H14 | 119.9 |
| N1—C1—H1 | 125.0 | C14—C15—C16 | 119.6 (3) |
| C2—C1—H1 | 125.0 | C14—C15—H15 | 120.2 |
| C1—C2—C9 | 131.1 (2) | C16—C15—H15 | 120.2 |
| C1—C2—C3 | 105.77 (19) | C15—C16—C17 | 120.6 (3) |
| C9—C2—C3 | 123.12 (19) | C15—C16—H16 | 119.7 |
| C4—C3—C8 | 118.8 (2) | C17—C16—H16 | 119.7 |
| C4—C3—C2 | 134.7 (2) | C12—C17—C16 | 120.2 (3) |
| C8—C3—C2 | 106.49 (18) | C12—C17—H17 | 119.9 |
| C5—C4—C3 | 118.9 (2) | C16—C17—H17 | 119.9 |
| C5—C4—H4 | 120.5 | C18—N4—C20 | 119.6 (3) |
| C3—C4—H4 | 120.5 | C18—N4—C19 | 122.2 (3) |
| C4—C5—C6 | 121.1 (2) | C20—N4—C19 | 118.1 (2) |
| C4—C5—H5 | 119.5 | O1—C18—N4 | 125.4 (3) |
| C6—C5—H5 | 119.5 | O1—C18—H18 | 117.3 |
| C7—C6—C5 | 121.4 (2) | N4—C18—H18 | 117.3 |
| C7—C6—H6 | 119.3 | N4—C19—H19A | 109.5 |
| C5—C6—H6 | 119.3 | N4—C19—H19B | 109.5 |
| C6—C7—C8 | 117.5 (2) | H19A—C19—H19B | 109.5 |
| C6—C7—H7 | 121.2 | N4—C19—H19C | 109.5 |
| C8—C7—H7 | 121.2 | H19A—C19—H19C | 109.5 |
| N1—C8—C7 | 129.9 (2) | H19B—C19—H19C | 109.5 |
| N1—C8—C3 | 107.81 (18) | N4—C20—H20A | 109.5 |
| C7—C8—C3 | 122.3 (2) | N4—C20—H20B | 109.5 |
| N2—C9—C2 | 131.1 (2) | H20A—C20—H20B | 109.5 |
| N2—C9—H9 | 114.4 | N4—C20—H20C | 109.5 |
| C2—C9—H9 | 114.4 | H20A—C20—H20C | 109.5 |
| N3—C10—S1 | 126.36 (16) | H20B—C20—H20C | 109.5 |
| N3—C10—S2 | 121.17 (16) |
| H··· | ||||
| N1—H1N···O1 | 0.84 (2) | 1.91 (2) | 2.749 (3) | 174 (3) |
| C1—H1···N3 | 0.93 | 2.40 | 2.869 (3) | 111. |
| C17—H17···S2 | 0.93 | 2.79 | 3.183 (3) | 107. |
| C20—H20A···O1 | 0.96 | 2.36 | 2.747 (3) | 104. |
| C9—H9···S1i | 0.93 | 2.60 | 3.279 (2) | 130. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.84 (2) | 1.91 (2) | 2.749 (3) | 174 (3) |
| C9—H9⋯S1i | 0.93 | 2.60 | 3.279 (2) | 130 |
Symmetry code: (i) .