Literature DB >> 21581733

Ethyl 3-bromo-1-(3-chloro-pyridin-2-yl)-1H-pyrazole-5-carboxyl-ate.

Hai-Bing He1, Shan Liu, Hai-Jun Tan, Ming Xia, Hong-Jun Zhu.   

Abstract

The title compound, C(11)H(9)BrClN(3)O(2), is an inter-mediate in the synthesis of Rynaxypyre, a new insecticidal anthranilic diamide used as a potent and selective ryanodine receptor activator. The dihedral angle between the aromatic ring planes is 78.7 (2)°.

Entities:  

Year:  2008        PMID: 21581733      PMCID: PMC2968002          DOI: 10.1107/S1600536808039329

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedure, see: Lahm et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H9BrClN3O2 M = 330.57 Orthorhombic, a = 7.404 (2) Å b = 10.024 (2) Å c = 17.072 (3) Å V = 1267.0 (4) Å3 Z = 4 Mo Kα radiation μ = 3.45 mm−1 T = 298 (2) K 0.40 × 0.30 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.339, T max = 0.424 (expected range = 0.284–0.355) 2295 measured reflections 1347 independent reflections 959 reflections with I > 2σ(I) R int = 0.051 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.129 S = 1.00 1347 reflections 163 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.42 e Å−3 Absolute structure: Flack (1983 ▶), 15 Friedel pairs Flack parameter: 0.37 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808039329/im2086sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039329/im2086Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9BrClN3O2F(000) = 656
Mr = 330.57Dx = 1.733 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 7.404 (2) Åθ = 9–13°
b = 10.024 (2) ŵ = 3.45 mm1
c = 17.072 (3) ÅT = 298 K
V = 1267.0 (4) Å3Block, colourless
Z = 40.40 × 0.30 × 0.30 mm
Enraf–Nonius CAD-4 diffractometer959 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
graphiteθmax = 25.3°, θmin = 2.4°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = 0→12
Tmin = 0.339, Tmax = 0.424l = −20→20
2295 measured reflections3 standard reflections every 200 reflections
1347 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.063P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
1347 reflectionsΔρmax = 0.33 e Å3
163 parametersΔρmin = −0.42 e Å3
0 restraintsAbsolute structure: Flack (1983), 155 Frieldel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.37
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.03831 (14)0.07498 (8)0.79256 (5)0.0580 (3)
Cl0.2975 (3)0.5607 (2)0.90139 (15)0.0661 (6)
O10.0029 (10)0.4767 (5)1.0803 (3)0.0645 (19)
N1−0.2392 (8)0.5697 (7)0.9219 (4)0.0481 (16)
C10.0862 (11)0.6189 (7)0.9087 (5)0.046 (2)
C20.0441 (15)0.7564 (7)0.9030 (4)0.056 (2)
H2A0.13550.81900.89640.067*
N2−0.0180 (10)0.3292 (5)0.8505 (3)0.0457 (17)
O20.0190 (8)0.2604 (4)1.1121 (3)0.0483 (14)
N3−0.0260 (10)0.3932 (5)0.9196 (3)0.0442 (16)
C3−0.1273 (14)0.7949 (8)0.9073 (6)0.059 (2)
H3A−0.15640.88480.90270.071*
C4−0.2629 (11)0.7014 (8)0.9187 (5)0.055 (2)
H4A−0.38010.73330.92450.066*
C5−0.0628 (13)0.5354 (6)0.9191 (4)0.045 (2)
C60.0235 (18)0.1666 (8)1.2393 (5)0.074 (3)
H6A0.03240.18601.29430.111*
H6B0.12180.10991.22410.111*
H6C−0.08890.12241.22890.111*
C70.0317 (13)0.2919 (7)1.1945 (4)0.0476 (19)
H7A−0.06710.34991.20970.057*
H7B0.14440.33771.20520.057*
C80.0085 (12)0.3603 (7)1.0617 (4)0.046 (2)
C90.0042 (11)0.3108 (6)0.9816 (4)0.041 (2)
C100.0303 (12)0.1880 (6)0.9503 (4)0.0413 (17)
H10A0.05260.10920.97730.050*
C110.0173 (11)0.2032 (6)0.8719 (4)0.0383 (18)
U11U22U33U12U13U23
Br0.0822 (6)0.0377 (4)0.0539 (4)0.0033 (5)0.0035 (5)−0.0055 (4)
Cl0.0537 (13)0.0473 (14)0.0974 (17)0.0016 (12)0.0030 (12)0.0009 (13)
O10.107 (6)0.032 (3)0.054 (3)−0.003 (3)−0.006 (4)−0.004 (2)
N10.047 (4)0.028 (4)0.070 (4)0.004 (4)0.019 (3)0.005 (4)
C10.045 (5)0.034 (4)0.058 (5)0.004 (3)0.002 (4)0.000 (3)
C20.082 (7)0.026 (4)0.059 (5)0.001 (5)0.018 (6)0.003 (3)
N20.067 (5)0.028 (3)0.042 (3)0.003 (3)−0.014 (4)0.002 (2)
O20.070 (4)0.035 (3)0.040 (2)0.000 (3)−0.004 (3)−0.001 (2)
N30.066 (4)0.024 (3)0.043 (3)−0.003 (3)−0.001 (3)−0.001 (2)
C30.071 (7)0.030 (5)0.077 (6)0.009 (5)0.004 (6)−0.003 (4)
C40.034 (5)0.052 (5)0.079 (6)0.001 (4)0.002 (5)−0.001 (5)
C50.073 (6)0.025 (4)0.036 (4)−0.010 (4)−0.005 (4)0.007 (3)
C60.113 (9)0.058 (5)0.050 (5)0.006 (6)−0.006 (6)0.013 (4)
C70.059 (5)0.043 (4)0.041 (4)0.010 (4)−0.006 (4)−0.005 (3)
C80.057 (7)0.029 (4)0.052 (4)−0.008 (4)0.009 (4)0.001 (3)
C90.052 (6)0.030 (4)0.041 (4)−0.001 (4)0.000 (4)0.001 (3)
C100.057 (5)0.019 (3)0.048 (4)0.002 (4)−0.003 (4)0.003 (3)
C110.044 (5)0.025 (3)0.046 (4)−0.004 (3)0.003 (4)0.001 (3)
Br—C111.874 (6)N3—C51.452 (8)
Cl—C11.675 (8)C3—C41.387 (12)
O1—C81.210 (7)C3—H3A0.9300
N1—C41.334 (9)C4—H4A0.9300
N1—C51.351 (11)C6—C71.472 (9)
C1—C51.396 (11)C6—H6A0.9600
C1—C21.416 (10)C6—H6B0.9600
C2—C31.328 (12)C6—H6C0.9600
C2—H2A0.9300C7—H7A0.9700
N2—C111.340 (8)C7—H7B0.9700
N2—N31.344 (7)C8—C91.454 (10)
O2—C81.323 (8)C9—C101.356 (9)
O2—C71.445 (7)C10—C111.351 (9)
N3—C91.361 (8)C10—H10A0.9300
C4—N1—C5112.2 (6)H6A—C6—H6B109.5
C5—C1—C2114.7 (8)C7—C6—H6C109.5
C5—C1—Cl122.6 (6)H6A—C6—H6C109.5
C2—C1—Cl122.6 (7)H6B—C6—H6C109.5
C3—C2—C1119.3 (9)O2—C7—C6108.5 (6)
C3—C2—H2A120.4O2—C7—H7A110.0
C1—C2—H2A120.4C6—C7—H7A110.0
C11—N2—N3102.7 (5)O2—C7—H7B110.0
C8—O2—C7118.2 (5)C6—C7—H7B110.0
N2—N3—C9112.7 (5)H7A—C7—H7B108.4
N2—N3—C5118.2 (5)O1—C8—O2124.1 (7)
C9—N3—C5129.1 (5)O1—C8—C9125.1 (7)
C2—C3—C4120.2 (8)O2—C8—C9110.8 (6)
C2—C3—H3A119.9C10—C9—N3105.5 (6)
C4—C3—H3A119.9C10—C9—C8132.6 (6)
N1—C4—C3125.4 (8)N3—C9—C8121.9 (6)
N1—C4—H4A117.3C11—C10—C9106.1 (6)
C3—C4—H4A117.3C11—C10—H10A126.9
N1—C5—C1128.0 (6)C9—C10—H10A126.9
N1—C5—N3115.5 (7)N2—C11—C10113.0 (6)
C1—C5—N3116.2 (8)N2—C11—Br117.8 (5)
C7—C6—H6A109.5C10—C11—Br129.2 (5)
C7—C6—H6B109.5
C5—C1—C2—C3−0.4 (12)C8—O2—C7—C6174.4 (8)
Cl—C1—C2—C3178.2 (8)C7—O2—C8—O1−2.5 (13)
C11—N2—N3—C90.4 (9)C7—O2—C8—C9177.6 (7)
C11—N2—N3—C5180.0 (7)N2—N3—C9—C10−0.9 (10)
C1—C2—C3—C41.2 (15)C5—N3—C9—C10179.6 (8)
C5—N1—C4—C34.9 (12)N2—N3—C9—C8177.7 (7)
C2—C3—C4—N1−3.8 (16)C5—N3—C9—C8−1.8 (14)
C4—N1—C5—C1−4.2 (11)O1—C8—C9—C10171.0 (10)
C4—N1—C5—N3−177.9 (6)O2—C8—C9—C10−9.1 (13)
C2—C1—C5—N12.1 (12)O1—C8—C9—N3−7.1 (14)
Cl—C1—C5—N1−176.5 (6)O2—C8—C9—N3172.8 (8)
C2—C1—C5—N3175.8 (6)N3—C9—C10—C110.9 (10)
Cl—C1—C5—N3−2.8 (10)C8—C9—C10—C11−177.4 (9)
N2—N3—C5—N189.5 (9)N3—N2—C11—C100.2 (10)
C9—N3—C5—N1−91.0 (10)N3—N2—C11—Br179.4 (6)
N2—N3—C5—C1−85.1 (9)C9—C10—C11—N2−0.7 (10)
C9—N3—C5—C194.4 (10)C9—C10—C11—Br−179.8 (6)
  2 in total

1.  Rynaxypyr: a new insecticidal anthranilic diamide that acts as a potent and selective ryanodine receptor activator.

Authors:  George P Lahm; Thomas M Stevenson; Thomas P Selby; John H Freudenberger; Daniel Cordova; Lindsey Flexner; Cheryl A Bellin; Christine M Dubas; Ben K Smith; Kenneth A Hughes; J Gary Hollingshaus; Christopher E Clark; Eric A Benner
Journal:  Bioorg Med Chem Lett       Date:  2007-09-07       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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