Literature DB >> 21581704

2-Chloro-3-(4-chloro-benzamido)-1,4-naphthoquinone.

Yakini Brandy1, Ray J Butcher, Tolulope A Adesiyun, Solomon Berhe, Oladapo Bakare.   

Abstract

The naphthoquinone ring is almost perpendicular [dihedral angle 71.02 (3)°] to the phenyl group of the title compound, C(17)H(9)Cl(2)NO(3), while the dihedral angle between the amide group and the 4-chloro-phenyl ring is 21.9 (2)°. The conformation of the N-H and C=O bonds are anti to each other. N-H⋯Cl hydrogen bonds link the mol-ecules into chains in the a-axis direction. In addition, these chains are linked by weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2008        PMID: 21581704      PMCID: PMC2967976          DOI: 10.1107/S1600536808040993

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures see: Lien et al. (1997 ▶); Huang et al. (2005 ▶); Bakare et al. (2003 ▶); Copeland et al. (2007 ▶); Win et al. (2005 ▶); Rubin-Preminger et al. (2004 ▶). For related literature, see: Gowda, Kožíšek et al. (2008 ▶); Gowda, Tokarčík et al. (2008 ▶); van Oosten et al. (2008 ▶); Shen et al. (2008 ▶).

Experimental

Crystal data

C17H9Cl2NO3 M = 346.15 Monoclinic, a = 5.6011 (2) Å b = 8.7237 (3) Å c = 29.7957 (9) Å β = 93.504 (3)° V = 1453.16 (8) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 200 (2) K 0.49 × 0.41 × 0.12 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.887, T max = 1.000 (expected range = 0.839–0.946) 13882 measured reflections 4842 independent reflections 2832 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.086 S = 0.93 4842 reflections 208 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808040993/at2690sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040993/at2690Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H9Cl2NO3F(000) = 704
Mr = 346.15Dx = 1.582 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4629 reflections
a = 5.6011 (2) Åθ = 4.6–32.5°
b = 8.7237 (3) ŵ = 0.46 mm1
c = 29.7957 (9) ÅT = 200 K
β = 93.504 (3)°Plate, pale yellow
V = 1453.16 (8) Å30.49 × 0.41 × 0.12 mm
Z = 4
Oxford Diffraction Gemini R diffractometer4842 independent reflections
Radiation source: fine-focus sealed tube2832 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 10.5081 pixels mm-1θmax = 32.6°, θmin = 4.6°
φ and ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −12→12
Tmin = 0.887, Tmax = 1.000l = −44→44
13882 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 0.93w = 1/[σ2(Fo2) + (0.0416P)2] where P = (Fo2 + 2Fc2)/3
4842 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.36 e Å3
Experimental. (CrysAlis RED; Oxford Diffraction, 2007) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.42210 (6)0.13331 (4)0.298854 (11)0.02796 (10)
Cl2−0.42944 (7)−0.05032 (6)0.057164 (13)0.04852 (14)
O10.54644 (18)0.07511 (14)0.39281 (4)0.0401 (3)
O2−0.26101 (17)−0.20745 (14)0.33569 (3)0.0378 (3)
O30.31583 (17)−0.12832 (14)0.24103 (3)0.0364 (3)
N−0.02512 (19)−0.06128 (15)0.27365 (4)0.0273 (3)
H0A−0.1786−0.04150.26890.033*
C10.3653 (2)0.00688 (18)0.38026 (5)0.0275 (3)
C20.2705 (2)0.01309 (17)0.33244 (4)0.0251 (3)
C30.0712 (2)−0.06238 (17)0.31773 (4)0.0240 (3)
C4−0.0749 (2)−0.14777 (18)0.34975 (5)0.0264 (3)
C50.0144 (2)−0.15604 (18)0.39758 (5)0.0272 (3)
C6−0.1138 (3)−0.2369 (2)0.42817 (5)0.0391 (4)
H6A−0.2591−0.28640.41860.047*
C7−0.0289 (3)−0.2451 (3)0.47288 (5)0.0477 (5)
H7A−0.1169−0.30020.49390.057*
C80.1823 (3)−0.1737 (2)0.48705 (5)0.0477 (5)
H8A0.2390−0.17940.51770.057*
C90.3111 (3)−0.0940 (2)0.45660 (5)0.0391 (4)
H9A0.4574−0.04590.46630.047*
C100.2273 (2)−0.08383 (18)0.41170 (5)0.0287 (3)
C110.1070 (3)−0.08964 (17)0.23680 (5)0.0263 (3)
C12−0.0252 (2)−0.07098 (17)0.19218 (4)0.0245 (3)
C13−0.2316 (2)0.01736 (18)0.18635 (5)0.0277 (3)
H13A−0.28820.07260.21100.033*
C14−0.3550 (3)0.02492 (19)0.14462 (5)0.0315 (3)
H14A−0.49660.08460.14060.038*
C15−0.2697 (3)−0.05531 (19)0.10907 (5)0.0307 (3)
C16−0.0608 (3)−0.1395 (2)0.11357 (5)0.0319 (3)
H16A−0.0020−0.19130.08850.038*
C170.0618 (3)−0.14706 (19)0.15551 (5)0.0295 (3)
H17A0.2058−0.20450.15920.035*
U11U22U33U12U13U23
Cl10.02827 (17)0.0286 (2)0.02758 (17)−0.00541 (15)0.00608 (13)0.00212 (15)
Cl20.0514 (2)0.0680 (4)0.02503 (18)0.0176 (2)−0.00744 (17)−0.0029 (2)
O10.0364 (6)0.0500 (8)0.0334 (6)−0.0141 (6)−0.0034 (5)−0.0042 (5)
O20.0321 (5)0.0490 (8)0.0318 (6)−0.0152 (5)−0.0010 (5)0.0023 (5)
O30.0328 (6)0.0476 (8)0.0288 (5)0.0120 (5)0.0007 (4)−0.0072 (5)
N0.0240 (6)0.0383 (8)0.0196 (5)0.0012 (5)0.0019 (5)0.0013 (5)
C10.0266 (7)0.0307 (9)0.0253 (7)−0.0004 (6)0.0021 (6)−0.0031 (6)
C20.0272 (7)0.0247 (8)0.0239 (7)0.0006 (6)0.0058 (6)−0.0012 (6)
C30.0252 (6)0.0278 (8)0.0192 (6)0.0026 (6)0.0028 (5)−0.0013 (6)
C40.0278 (7)0.0268 (8)0.0248 (7)−0.0014 (6)0.0030 (6)−0.0008 (6)
C50.0294 (7)0.0302 (9)0.0220 (6)0.0000 (6)0.0023 (6)0.0005 (6)
C60.0374 (8)0.0517 (12)0.0286 (7)−0.0087 (8)0.0041 (7)0.0049 (8)
C70.0502 (10)0.0654 (14)0.0282 (8)−0.0078 (9)0.0083 (7)0.0117 (9)
C80.0532 (10)0.0680 (15)0.0214 (7)0.0003 (10)−0.0008 (7)0.0049 (8)
C90.0374 (8)0.0562 (12)0.0232 (7)−0.0047 (8)−0.0026 (6)−0.0018 (7)
C100.0296 (7)0.0348 (9)0.0218 (6)0.0004 (6)0.0023 (6)−0.0028 (6)
C110.0306 (7)0.0258 (8)0.0228 (7)0.0018 (6)0.0033 (6)−0.0012 (6)
C120.0275 (7)0.0260 (8)0.0201 (6)−0.0020 (6)0.0034 (5)0.0002 (6)
C130.0321 (7)0.0282 (8)0.0233 (7)0.0034 (6)0.0060 (6)−0.0017 (6)
C140.0293 (7)0.0361 (9)0.0291 (7)0.0071 (7)0.0022 (6)0.0014 (7)
C150.0359 (8)0.0359 (9)0.0202 (6)0.0015 (7)−0.0008 (6)0.0018 (7)
C160.0347 (8)0.0400 (10)0.0215 (7)0.0064 (7)0.0051 (6)−0.0032 (7)
C170.0292 (7)0.0348 (9)0.0246 (7)0.0052 (6)0.0035 (6)−0.0009 (6)
Cl1—C21.7105 (15)C7—C81.380 (2)
Cl2—C151.7394 (14)C7—H7A0.9500
O1—C11.2154 (17)C8—C91.381 (2)
O2—C41.2166 (16)C8—H8A0.9500
O3—C111.2167 (16)C9—C101.3932 (19)
N—C111.3834 (18)C9—H9A0.9500
N—C31.3890 (15)C11—C121.4905 (19)
N—H0A0.8800C12—C171.392 (2)
C1—C101.480 (2)C12—C131.392 (2)
C1—C21.4907 (18)C13—C141.3867 (19)
C2—C31.3461 (19)C13—H13A0.9500
C3—C41.494 (2)C14—C151.379 (2)
C4—C51.4829 (19)C14—H14A0.9500
C5—C61.387 (2)C15—C161.381 (2)
C5—C101.391 (2)C16—C171.3903 (19)
C6—C71.389 (2)C16—H16A0.9500
C6—H6A0.9500C17—H17A0.9500
C11—N—C3123.62 (11)C8—C9—C10120.27 (15)
C11—N—H0A118.2C8—C9—H9A119.9
C3—N—H0A118.2C10—C9—H9A119.9
O1—C1—C10121.71 (13)C5—C10—C9119.60 (14)
O1—C1—C2121.20 (14)C5—C10—C1121.47 (12)
C10—C1—C2117.08 (12)C9—C10—C1118.91 (13)
C3—C2—C1122.21 (13)O3—C11—N121.65 (12)
C3—C2—Cl1122.74 (11)O3—C11—C12123.01 (13)
C1—C2—Cl1114.90 (10)N—C11—C12115.34 (12)
C2—C3—N124.82 (13)C17—C12—C13119.63 (12)
C2—C3—C4120.79 (12)C17—C12—C11118.00 (12)
N—C3—C4114.27 (12)C13—C12—C11122.36 (12)
O2—C4—C5122.80 (13)C14—C13—C12120.19 (13)
O2—C4—C3119.01 (12)C14—C13—H13A119.9
C5—C4—C3118.19 (12)C12—C13—H13A119.9
C6—C5—C10120.03 (13)C15—C14—C13119.16 (13)
C6—C5—C4119.89 (13)C15—C14—H14A120.4
C10—C5—C4120.08 (13)C13—C14—H14A120.4
C5—C6—C7119.71 (15)C14—C15—C16121.78 (13)
C5—C6—H6A120.1C14—C15—Cl2119.11 (11)
C7—C6—H6A120.1C16—C15—Cl2119.11 (11)
C8—C7—C6120.49 (16)C15—C16—C17118.79 (14)
C8—C7—H7A119.8C15—C16—H16A120.6
C6—C7—H7A119.8C17—C16—H16A120.6
C7—C8—C9119.89 (14)C16—C17—C12120.37 (13)
C7—C8—H8A120.1C16—C17—H17A119.8
C9—C8—H8A120.1C12—C17—H17A119.8
O1—C1—C2—C3179.54 (14)C6—C5—C10—C1−178.31 (15)
C10—C1—C2—C3−1.3 (2)C4—C5—C10—C12.1 (2)
O1—C1—C2—Cl1−4.8 (2)C8—C9—C10—C5−0.8 (3)
C10—C1—C2—Cl1174.35 (11)C8—C9—C10—C1177.93 (16)
C1—C2—C3—N−179.82 (14)O1—C1—C10—C5177.09 (15)
Cl1—C2—C3—N4.8 (2)C2—C1—C10—C5−2.0 (2)
C1—C2—C3—C44.4 (2)O1—C1—C10—C9−1.6 (2)
Cl1—C2—C3—C4−170.99 (11)C2—C1—C10—C9179.29 (14)
C11—N—C3—C249.6 (2)C3—N—C11—O35.2 (2)
C11—N—C3—C4−134.37 (14)C3—N—C11—C12−175.37 (13)
C2—C3—C4—O2175.91 (14)O3—C11—C12—C1721.9 (2)
N—C3—C4—O2−0.3 (2)N—C11—C12—C17−157.54 (14)
C2—C3—C4—C5−4.1 (2)O3—C11—C12—C13−159.00 (15)
N—C3—C4—C5179.64 (12)N—C11—C12—C1321.6 (2)
O2—C4—C5—C61.2 (2)C17—C12—C13—C142.4 (2)
C3—C4—C5—C6−178.73 (15)C11—C12—C13—C14−176.72 (14)
O2—C4—C5—C10−179.23 (15)C12—C13—C14—C15−0.4 (2)
C3—C4—C5—C100.8 (2)C13—C14—C15—C16−1.9 (2)
C10—C5—C6—C70.1 (3)C13—C14—C15—Cl2178.10 (12)
C4—C5—C6—C7179.64 (16)C14—C15—C16—C172.1 (2)
C5—C6—C7—C8−0.2 (3)Cl2—C15—C16—C17−177.92 (13)
C6—C7—C8—C9−0.3 (3)C15—C16—C17—C120.0 (2)
C7—C8—C9—C100.7 (3)C13—C12—C17—C16−2.2 (2)
C6—C5—C10—C90.4 (2)C11—C12—C17—C16176.94 (14)
C4—C5—C10—C9−179.17 (15)
D—H···AD—HH···AD···AD—H···A
N—H0A···Cl1i0.882.893.6491 (12)145
C14—H14A···O2ii0.952.403.2517 (19)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H0A⋯Cl1i0.882.893.6491 (12)145
C14—H14A⋯O2ii0.952.403.2517 (19)149

Symmetry codes: (i) ; (ii) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of substituted 3-chloro-5,8-dimethoxy-1,4-naphthoquinone and related compounds.

Authors:  L J Huang; F C Chang; K H Lee; J P Wang; C M Teng; S C Kuo
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3.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of 2-substituted 3-chloro-1,4-naphthoquinone derivatives.

Authors:  J C Lien; L J Huang; J P Wang; C M Teng; K H Lee; S C Kuo
Journal:  Bioorg Med Chem       Date:  1997-12       Impact factor: 3.641

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Authors:  Qun Shen; Shu-Qiang Yu; Bin-Bin Hu; Ping Lu
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7.  N-(2,4-Dichloro-phen-yl)benzamide.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; B P Sowmya; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

8.  Cytotoxicity of 2,3-dichloro-5,8-dimethoxy-1,4-naphthoquinone in androgen-dependent and -independent prostate cancer cell lines.

Authors:  Robert L Copeland; Jharna R Das; Oladapo Bakare; Nkechi M Enwerem; Solomon Berhe; Kenguele Hillaire; Douglas White; Desta Beyene; Olakunle O Kassim; Yasmine M Kanaan
Journal:  Anticancer Res       Date:  2007 May-Jun       Impact factor: 2.480

9.  Synthesis and MEK1 inhibitory activities of imido-substituted 2-chloro-1,4-naphthoquinones.

Authors:  Oladapo Bakare; Curtis L Ashendel; Hairuo Peng; Leon H Zalkow; Edward M Burgess
Journal:  Bioorg Med Chem       Date:  2003-07-17       Impact factor: 3.641

  9 in total

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