Literature DB >> 21581699

N-[(Z)-(1-Methyl-1H-pyrrol-2-yl)methyl-idene]-1H-1,2,4-triazol-5-amine.

Zahid H Chohan, Muhammad Hanif, M Nawaz Tahir.   

Abstract

In the title compound, C(8)n class="Species">H(9)N(5), a Schiff base derived from N-methyl-pyrrole-2-carbaldehyde and 3-amino-1,2,4-triazole, the C=N double bond linking the two aromatic rings has a Z conformation. The two rings are twisted by 24.20 (5)°. A chain motif results from N-H⋯N hydrogen bonding.

Entities:  

Year:  2008        PMID: 21581699      PMCID: PMC2967972          DOI: 10.1107/S160053680804097X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Arfan et al. (2008 ▶).

Experimental

Crystal data

C8H9N5 M = 175.20 Monoclinic, a = 7.2519 (3) Å b = 12.8616 (6) Å c = 9.7445 (4) Å β = 101.917 (2)° V = 889.29 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 (2) K 0.26 × 0.20 × 0.16 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.976, T max = 0.988 10203 measured reflections 2212 independent reflections 1651 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.107 S = 1.03 2212 reflections 136 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680804097X/ng2523sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680804097X/ng2523Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N5F(000) = 368
Mr = 175.20Dx = 1.309 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1859 reflections
a = 7.2519 (3) Åθ = 2.7–28.3°
b = 12.8616 (6) ŵ = 0.09 mm1
c = 9.7445 (4) ÅT = 296 K
β = 101.917 (2)°Prismatic, orange
V = 889.29 (7) Å30.26 × 0.20 × 0.16 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2212 independent reflections
Radiation source: fine-focus sealed tube1651 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 7.4 pixels mm-1θmax = 28.3°, θmin = 2.7°
ω scansh = −5→9
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −16→17
Tmin = 0.976, Tmax = 0.988l = −12→12
10203 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0556P)2 + 0.079P] where P = (Fo2 + 2Fc2)/3
2212 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.11672 (13)0.58683 (8)0.33358 (11)0.0543 (3)
N20.27287 (13)0.37308 (7)0.38528 (9)0.0459 (3)
N30.38353 (14)0.21080 (7)0.32861 (9)0.0475 (3)
N40.44733 (16)0.11865 (8)0.38789 (10)0.0552 (3)
N50.37569 (15)0.22874 (7)0.54902 (9)0.0494 (3)
C10.0572 (2)0.53330 (12)0.20067 (14)0.0754 (5)
C20.0834 (2)0.68853 (11)0.35562 (19)0.0691 (5)
C30.1530 (2)0.71296 (12)0.49152 (19)0.0719 (6)
C40.23118 (19)0.62366 (11)0.55771 (16)0.0609 (5)
C50.20967 (15)0.54493 (9)0.45902 (12)0.0471 (3)
C60.27772 (15)0.44120 (9)0.48170 (12)0.0451 (3)
C70.34307 (15)0.27546 (8)0.42465 (10)0.0415 (3)
C80.43865 (19)0.13408 (10)0.51969 (12)0.0545 (4)
H1A−0.032200.575560.138370.1132*
H1B−0.000320.468260.215990.1132*
H1C0.164700.520680.159760.1132*
H20.025 (2)0.7315 (13)0.2805 (17)0.0829*
H30.149 (2)0.7801 (13)0.5321 (17)0.0862*
H3N0.3769 (18)0.2235 (10)0.2359 (14)0.0571*
H40.294 (2)0.6150 (11)0.6550 (17)0.0730*
H60.3326 (17)0.4259 (9)0.5798 (14)0.0541*
H80.4755 (19)0.0815 (11)0.5904 (15)0.0655*
U11U22U33U12U13U23
N10.0532 (5)0.0502 (6)0.0587 (6)0.0034 (4)0.0099 (4)0.0071 (5)
N20.0558 (5)0.0467 (5)0.0355 (5)0.0026 (4)0.0102 (4)0.0039 (4)
N30.0696 (6)0.0446 (5)0.0290 (4)−0.0016 (4)0.0116 (4)−0.0003 (4)
N40.0813 (7)0.0435 (6)0.0415 (5)0.0025 (5)0.0143 (5)−0.0004 (4)
N50.0708 (6)0.0486 (5)0.0302 (4)0.0041 (4)0.0137 (4)0.0046 (4)
C10.0920 (10)0.0713 (10)0.0546 (8)0.0084 (8)−0.0044 (7)0.0100 (7)
C20.0635 (8)0.0525 (8)0.0924 (11)0.0090 (6)0.0187 (7)0.0113 (7)
C30.0720 (9)0.0503 (8)0.0983 (12)0.0023 (7)0.0292 (8)−0.0106 (8)
C40.0618 (8)0.0581 (8)0.0653 (8)−0.0038 (6)0.0189 (6)−0.0101 (6)
C50.0455 (5)0.0481 (6)0.0494 (6)−0.0023 (5)0.0135 (4)0.0009 (5)
C60.0499 (6)0.0485 (6)0.0373 (5)−0.0020 (5)0.0102 (4)0.0035 (5)
C70.0515 (6)0.0444 (6)0.0288 (5)−0.0021 (4)0.0090 (4)0.0009 (4)
C80.0782 (8)0.0466 (7)0.0388 (6)0.0043 (6)0.0120 (5)0.0068 (5)
N1—C11.4515 (17)C3—C41.380 (2)
N1—C21.3553 (18)C4—C51.3830 (19)
N1—C51.3779 (15)C5—C61.4238 (16)
N2—C61.2798 (14)C1—H1A0.9600
N2—C71.3792 (14)C1—H1B0.9600
N3—N41.3572 (14)C1—H1C0.9600
N3—C71.3293 (14)C2—H20.945 (16)
N4—C81.3139 (15)C3—H30.953 (17)
N5—C71.3294 (13)C4—H40.970 (16)
N5—C81.3514 (16)C6—H60.977 (13)
N3—H3N0.910 (13)C8—H80.963 (14)
C2—C31.353 (3)
N1···N22.9763 (14)C1···H3vii3.058 (16)
N2···N12.9763 (14)C6···H1B2.9600
N2···C12.9609 (17)C7···H2iv3.039 (16)
N3···N5i2.8225 (12)C7···H3Niii2.992 (13)
N3···N52.1725 (12)C8···H8ii3.083 (14)
N4···C8ii3.4283 (17)C8···H3Niii2.896 (13)
N4···N52.2532 (14)H1A···H22.4200
N5···N3iii2.8225 (12)H1B···N22.6100
N5···N42.2532 (14)H1B···C62.9600
N2···H1B2.6100H1C···N22.8900
N2···H1C2.8900H2···H1A2.4200
N3···H2iv2.946 (15)H2···N3viii2.946 (15)
N4···H8ii2.634 (14)H2···C7viii3.039 (16)
N5···H62.580 (12)H3···C1ix3.058 (16)
N5···H3Niii1.920 (13)H3N···N5i1.920 (13)
C1···N22.9609 (17)H3N···C7i2.992 (13)
C3···C7v3.5793 (19)H3N···C8i2.896 (13)
C3···C8v3.576 (2)H3N···H6i2.431 (18)
C4···C7v3.3206 (18)H4···H62.572 (19)
C5···C5vi3.4963 (16)H6···N52.580 (12)
C6···C6v3.5119 (16)H6···H42.572 (19)
C7···C3v3.5793 (19)H6···H3Niii2.431 (18)
C7···C4v3.3206 (18)H8···N4ii2.634 (14)
C8···C3v3.576 (2)H8···C8ii3.083 (14)
C8···N4ii3.4283 (17)
C1—N1—C2124.70 (12)N3—C7—N5109.60 (9)
C1—N1—C5127.37 (11)N4—C8—N5115.42 (11)
C2—N1—C5107.91 (11)N1—C1—H1A109.00
C6—N2—C7117.80 (9)N1—C1—H1B109.00
N4—N3—C7110.62 (8)N1—C1—H1C109.00
N3—N4—C8101.73 (10)H1A—C1—H1B109.00
C7—N5—C8102.63 (9)H1A—C1—H1C109.00
N4—N3—H3N121.5 (8)H1B—C1—H1C109.00
C7—N3—H3N127.8 (8)N1—C2—H2120.5 (10)
N1—C2—C3109.66 (14)C3—C2—H2129.7 (10)
C2—C3—C4107.35 (14)C2—C3—H3125.4 (10)
C3—C4—C5107.93 (13)C4—C3—H3127.2 (10)
N1—C5—C4107.15 (11)C3—C4—H4128.1 (9)
C4—C5—C6126.33 (11)C5—C4—H4124.0 (9)
N1—C5—C6126.48 (10)N2—C6—H6121.6 (7)
N2—C6—C5124.85 (11)C5—C6—H6113.5 (7)
N2—C7—N3119.75 (9)N4—C8—H8122.1 (9)
N2—C7—N5130.62 (9)N5—C8—H8122.5 (9)
C1—N1—C5—C4−177.86 (12)C7—N3—N4—C80.72 (13)
C1—N1—C2—C3178.37 (12)N3—N4—C8—N5−0.41 (15)
C5—N1—C2—C30.21 (16)C8—N5—C7—N30.52 (13)
C2—N1—C5—C6−177.44 (12)C8—N5—C7—N2178.36 (12)
C2—N1—C5—C40.23 (14)C7—N5—C8—N4−0.06 (15)
C1—N1—C5—C64.47 (19)N1—C2—C3—C4−0.57 (17)
C6—N2—C7—N518.65 (18)C2—C3—C4—C50.70 (17)
C6—N2—C7—N3−163.70 (11)C3—C4—C5—C6177.10 (12)
C7—N2—C6—C5−179.40 (11)C3—C4—C5—N1−0.57 (15)
N4—N3—C7—N5−0.82 (14)C4—C5—C6—N2−172.36 (12)
N4—N3—C7—N2−178.93 (10)N1—C5—C6—N24.88 (19)
D—H···AD—HH···AD···AD—H···A
N3—H3n···N5i0.910 (13)1.920 (13)2.8225 (12)171.3 (12)
C1—H1B···N20.96002.61002.9609 (17)102.00
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3n⋯N5i0.91 (1)1.92 (1)2.8225 (12)171 (1)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-(2-Benzamido-phen-yl)-4-(4-hydroxy-phen-yl)-5-methyl-4H-1,2,4-triazol-1-ium chloride.

Authors:  Mohammad Arfan; M Nawaz Tahir; Rasool Khan; Mohammad S Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-16
  2 in total
  1 in total

1.  N-[(E)-(5-Methyl-thio-phen-2-yl)methyl-idene]-1H-1,2,4-triazol-3-amine.

Authors:  Zahid H Chohan; Muhammad Hanif; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13
  1 in total

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