Literature DB >> 21581612

(3S,4S,5R)-4-Hydr-oxy-3-methyl-5-[(2S,3R)-3-methyl-pent-4-en-2-yl]-4,5-dihydro-furan-2(3H)-one.

Annika Gille, Dieter Bläser, Roland Boese, Hans Preut, Martin Hiersemann.   

Abstract

The relative configuration of the title compound, C(11)H(18)O(3), was corroborated by single-crystal X-ray diffraction analysis. In the crystal, mol-ecules are linked via a O-H⋯O hydrogen bond and a chain of mol-ecules is formed along [010].

Entities:  

Year:  2008        PMID: 21581612      PMCID: PMC2968068          DOI: 10.1107/S1600536808042414

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further synthetic details, see: Abraham, Körner & Hierse­mann (2004 ▶); Abraham, Körner et al. (2004 ▶); Evans et al. (1981 ▶, 1999 ▶); Körner & Hiersemann (2006 ▶, 2007 ▶); Mitsunobu (1981 ▶); Mitsunobu & Yamada (1967 ▶); Mitsunobu et al. (1967 ▶); Otera et al. (1992 ▶); Pollex & Hiersemann (2005 ▶).

Experimental

Crystal data

C11H18O3 M = 198.25 Monoclinic, a = 7.604 (2) Å b = 6.574 (2) Å c = 11.323 (4) Å β = 91.211 (7)° V = 565.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 173 (2) K 0.35 × 0.10 × 0.07 mm

Data collection

Siemens SMART three-axis goniometer with APEXII area-detector diffractometer Absorption correction: none 7868 measured reflections 1507 independent reflections 1076 reflections with I > 2σ(I) R int = 0.131

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.098 S = 0.98 1507 reflections 132 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042414/hb2861sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042414/hb2861Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H18O3F(000) = 216
Mr = 198.25Dx = 1.163 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1365 reflections
a = 7.604 (2) Åθ = 2.7–26.3°
b = 6.574 (2) ŵ = 0.08 mm1
c = 11.323 (4) ÅT = 173 K
β = 91.211 (7)°Needle, colourless
V = 565.9 (3) Å30.35 × 0.10 × 0.07 mm
Z = 2
Siemens SMART three-axis goniometer with APEXII area-detector system diffractometer1076 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.131
graphiteθmax = 28.3°, θmin = 1.8°
Detector resolution: 512 pixels mm-1h = −9→10
Data collection strategy APEX 2/COSMO scansk = −8→8
7868 measured reflectionsl = −15→14
1507 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0279P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
1507 reflectionsΔρmax = 0.19 e Å3
132 parametersΔρmin = −0.19 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.077 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2255 (2)0.2085 (3)0.91883 (16)0.0351 (5)
O20.1493 (2)0.7353 (3)0.96072 (16)0.0382 (5)
H20.20760.83180.99040.057*
O30.2839 (2)0.0670 (3)1.09375 (17)0.0408 (5)
C10.3186 (5)0.7143 (7)0.4846 (3)0.0700 (11)
H1A0.19940.73450.46070.084*
H1B0.40960.73020.42920.084*
C20.3570 (4)0.6651 (5)0.5929 (3)0.0471 (8)
H2A0.47830.64690.61180.057*
C30.2316 (4)0.6337 (4)0.6919 (2)0.0381 (7)
H30.26150.73780.75350.046*
C40.2658 (4)0.4224 (4)0.7492 (2)0.0352 (7)
H40.39590.40820.76150.042*
C50.1827 (3)0.4084 (4)0.8699 (2)0.0305 (6)
H50.05220.42260.86100.037*
C60.2512 (3)0.5554 (4)0.9651 (2)0.0309 (6)
H60.37780.58770.95220.037*
C70.2319 (4)0.4339 (4)1.0786 (2)0.0324 (6)
H70.10860.45221.10590.039*
C80.2500 (3)0.2207 (4)1.0367 (2)0.0327 (6)
C90.0401 (4)0.6683 (5)0.6558 (3)0.0513 (8)
H9A0.02460.80890.62880.077*
H9B−0.03480.64340.72360.077*
H9C0.00720.57480.59160.077*
C100.2046 (4)0.2460 (5)0.6698 (3)0.0468 (8)
H10A0.24870.11730.70250.070*
H10B0.25030.26500.59020.070*
H10C0.07580.24290.66570.070*
C110.3561 (4)0.4916 (5)1.1806 (3)0.0477 (8)
H11A0.33520.40201.24810.071*
H11B0.33470.63311.20350.071*
H11C0.47810.47671.15580.071*
U11U22U33U12U13U23
O10.0416 (11)0.0232 (11)0.0406 (11)0.0024 (9)0.0034 (8)−0.0022 (8)
O20.0413 (11)0.0230 (10)0.0504 (12)0.0052 (9)0.0008 (9)−0.0046 (9)
O30.0428 (12)0.0276 (11)0.0520 (13)0.0029 (9)0.0009 (10)0.0033 (9)
C10.078 (2)0.083 (3)0.050 (2)−0.008 (2)0.0124 (17)0.006 (2)
C20.0516 (19)0.0459 (19)0.0439 (19)−0.0065 (15)0.0038 (15)−0.0007 (14)
C30.0457 (18)0.0296 (15)0.0391 (17)−0.0013 (13)0.0026 (14)−0.0019 (12)
C40.0367 (16)0.0273 (15)0.0418 (16)0.0022 (13)0.0027 (12)−0.0043 (13)
C50.0327 (14)0.0184 (13)0.0403 (16)−0.0005 (12)0.0005 (12)−0.0025 (12)
C60.0294 (15)0.0194 (14)0.0441 (16)−0.0010 (11)0.0024 (12)−0.0012 (12)
C70.0328 (15)0.0250 (14)0.0396 (16)−0.0016 (12)0.0010 (12)−0.0060 (12)
C80.0275 (14)0.0268 (14)0.0440 (17)−0.0030 (12)0.0027 (12)−0.0020 (14)
C90.057 (2)0.0446 (19)0.0527 (19)0.0102 (16)0.0027 (15)0.0093 (14)
C100.066 (2)0.0294 (16)0.0447 (17)0.0034 (16)−0.0029 (15)−0.0096 (14)
C110.054 (2)0.0397 (17)0.0489 (19)−0.0075 (15)−0.0091 (15)0.0000 (14)
O1—C81.347 (3)C5—C61.531 (4)
O1—C51.460 (3)C5—H51.0000
O2—C61.414 (3)C6—C71.522 (4)
O2—H20.8400C6—H61.0000
O3—C81.223 (3)C7—C81.487 (4)
C1—C21.296 (4)C7—C111.524 (4)
C1—H1A0.9500C7—H71.0000
C1—H1B0.9500C9—H9A0.9800
C2—C31.501 (4)C9—H9B0.9800
C2—H2A0.9500C9—H9C0.9800
C3—C91.521 (4)C10—H10A0.9800
C3—C41.553 (4)C10—H10B0.9800
C3—H31.0000C10—H10C0.9800
C4—C51.520 (4)C11—H11A0.9800
C4—C101.534 (4)C11—H11B0.9800
C4—H41.0000C11—H11C0.9800
C8—O1—C5110.4 (2)C7—C6—H6110.2
C6—O2—H2109.5C5—C6—H6110.2
C2—C1—H1A120.0C8—C7—C6102.4 (2)
C2—C1—H1B120.0C8—C7—C11114.6 (2)
H1A—C1—H1B120.0C6—C7—C11116.1 (2)
C1—C2—C3127.4 (3)C8—C7—H7107.8
C1—C2—H2A116.3C6—C7—H7107.8
C3—C2—H2A116.3C11—C7—H7107.8
C2—C3—C9113.5 (2)O3—C8—O1119.8 (3)
C2—C3—C4109.4 (2)O3—C8—C7129.1 (2)
C9—C3—C4113.4 (2)O1—C8—C7111.1 (2)
C2—C3—H3106.7C3—C9—H9A109.5
C9—C3—H3106.7C3—C9—H9B109.5
C4—C3—H3106.7H9A—C9—H9B109.5
C5—C4—C10110.8 (2)C3—C9—H9C109.5
C5—C4—C3111.1 (2)H9A—C9—H9C109.5
C10—C4—C3112.7 (2)H9B—C9—H9C109.5
C5—C4—H4107.3C4—C10—H10A109.5
C10—C4—H4107.3C4—C10—H10B109.5
C3—C4—H4107.3H10A—C10—H10B109.5
O1—C5—C4107.56 (19)C4—C10—H10C109.5
O1—C5—C6103.3 (2)H10A—C10—H10C109.5
C4—C5—C6117.0 (2)H10B—C10—H10C109.5
O1—C5—H5109.5C7—C11—H11A109.5
C4—C5—H5109.5C7—C11—H11B109.5
C6—C5—H5109.5H11A—C11—H11B109.5
O2—C6—C7113.9 (2)C7—C11—H11C109.5
O2—C6—C5109.0 (2)H11A—C11—H11C109.5
C7—C6—C5103.1 (2)H11B—C11—H11C109.5
O2—C6—H6110.2
C1—C2—C3—C9−0.8 (5)C4—C5—C6—O290.6 (3)
C1—C2—C3—C4126.9 (4)O1—C5—C6—C7−30.1 (2)
C2—C3—C4—C5163.2 (2)C4—C5—C6—C7−148.1 (2)
C9—C3—C4—C5−69.1 (3)O2—C6—C7—C8146.5 (2)
C2—C3—C4—C10−71.8 (3)C5—C6—C7—C828.6 (3)
C9—C3—C4—C1055.9 (3)O2—C6—C7—C11−88.0 (3)
C8—O1—C5—C4144.9 (2)C5—C6—C7—C11154.1 (2)
C8—O1—C5—C620.6 (2)C5—O1—C8—O3178.6 (2)
C10—C4—C5—O155.7 (3)C5—O1—C8—C7−2.0 (3)
C3—C4—C5—O1−178.3 (2)C6—C7—C8—O3161.8 (3)
C10—C4—C5—C6171.3 (2)C11—C7—C8—O335.3 (4)
C3—C4—C5—C6−62.6 (3)C6—C7—C8—O1−17.5 (3)
O1—C5—C6—O2−151.49 (19)C11—C7—C8—O1−144.0 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.842.022.830 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.842.022.830 (3)163

Symmetry code: (i) .

  3 in total

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