Literature DB >> 21581596

6-Bromo-1-butylindoline-2,3-dione.

Lei Ji, Qi Fang, Jian-Dong Fan.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C(12)H(12)BrNO(2). The C-C bond lengths of the two carbonyl C atoms of the five-membered rings are distinctly longer than a normal Csp(2)-Csp(2) single bond. One of the mol-ecules makes parallel self-coupled (inversion) dimers by π-π inter-actions with phen-yl-phenyl inter-planar distances of 3.403 (2) Å. The other mol-ecule also forms self-dimers at longer phen-yl-phenyl plane distances [3.649 (2) Å]. In the crystal, a C-H⋯O interaction is seen.

Entities:  

Year:  2008        PMID: 21581596      PMCID: PMC2968054          DOI: 10.1107/S1600536808042098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis and applications, see: Kopka et al. (2006 ▶); Pirrung et al. (2005 ▶); Zhou et al. (2006 ▶). For related crystal structures, see: Goldschmidt & Llewellyn (1950 ▶); Palenik et al. (1990 ▶).

Experimental

Crystal data

C12H12BrNO2 M = 282.14 Monoclinic, a = 13.3097 (2) Å b = 11.8793 (2) Å c = 16.2238 (2) Å β = 112.340 (1)° V = 2372.62 (6) Å3 Z = 8 Mo Kα radiation μ = 3.45 mm−1 T = 296 (2) K 0.37 × 0.13 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.526, T max = 0.744 (expected range = 0.487–0.689) 16713 measured reflections 5170 independent reflections 2424 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.070 S = 0.93 5170 reflections 364 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042098/cs2100sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042098/cs2100Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12BrNO2F(000) = 1136
Mr = 282.14Dx = 1.580 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3677 reflections
a = 13.3097 (2) Åθ = 2.2–23.8°
b = 11.8793 (2) ŵ = 3.45 mm1
c = 16.2238 (2) ÅT = 296 K
β = 112.340 (1)°Plank, orange
V = 2372.62 (6) Å30.37 × 0.13 × 0.11 mm
Z = 8
Bruker APEXII CCD diffractometer5170 independent reflections
Radiation source: fine-focus sealed tube2424 reflections with I > 2σ(I)
graphiteRint = 0.076
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 1.7°
phi and ω scansh = −16→17
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −15→10
Tmin = 0.526, Tmax = 0.744l = −20→20
16713 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0158P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max = 0.001
5170 reflectionsΔρmax = 0.39 e Å3
364 parametersΔρmin = −0.49 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00147 (12)
xyzUiso*/Ueq
Br10.25474 (2)0.52247 (4)0.03130 (3)0.07546 (17)
O10.82928 (15)0.3064 (2)0.18511 (13)0.0649 (7)
O20.82426 (16)0.5497 (2)0.22161 (15)0.0682 (7)
N10.64300 (18)0.3303 (3)0.12570 (15)0.0448 (7)
C10.7490 (2)0.3648 (3)0.1675 (2)0.0477 (9)
C20.7445 (2)0.4919 (3)0.18633 (19)0.0475 (9)
C30.6286 (2)0.5203 (3)0.15321 (19)0.0431 (9)
C40.5754 (3)0.6195 (4)0.1517 (2)0.0519 (10)
H40.616 (2)0.688 (3)0.1810 (18)0.058 (10)*
C50.4628 (3)0.6193 (4)0.1150 (2)0.0535 (10)
H50.4240 (19)0.690 (3)0.1167 (16)0.047 (9)*
C60.4095 (2)0.5211 (4)0.0815 (2)0.0476 (9)
C70.4595 (2)0.4196 (4)0.0807 (2)0.0435 (9)
H70.4227 (18)0.351 (2)0.0576 (16)0.036 (9)*
C80.5720 (2)0.4213 (3)0.11826 (18)0.0382 (8)
C90.6102 (3)0.2182 (3)0.0965 (3)0.0504 (10)
H9A0.538 (2)0.218 (3)0.040 (2)0.073 (10)*
H9B0.659 (2)0.185 (3)0.081 (2)0.078 (13)*
C100.5921 (3)0.1458 (4)0.1651 (3)0.0640 (11)
H10B0.537 (2)0.185 (2)0.1859 (17)0.052 (9)*
H10A0.658 (2)0.147 (3)0.221 (2)0.070 (11)*
C110.5557 (4)0.0275 (4)0.1272 (3)0.0831 (14)
H11A0.613 (3)−0.012 (3)0.121 (2)0.100*
H11B0.477 (3)0.032 (3)0.085 (2)0.100*
C120.5496 (3)−0.0541 (4)0.1927 (3)0.1061 (15)
H12A0.6201−0.06280.23920.138 (10)*
H12B0.5253−0.12530.16410.138 (10)*
H12C0.4993−0.02760.21790.138 (10)*
Br20.25658 (2)−0.10901 (4)0.09621 (3)0.07726 (17)
O3−0.32733 (16)−0.1957 (2)0.03877 (14)0.0728 (8)
O4−0.30063 (18)−0.2190 (2)−0.13304 (15)0.0795 (8)
N2−0.14314 (18)−0.1581 (2)0.08915 (16)0.0493 (7)
C21−0.2438 (3)−0.1837 (3)0.0266 (2)0.0550 (10)
C22−0.2278 (3)−0.1969 (3)−0.0632 (2)0.0538 (9)
C23−0.1117 (2)−0.1769 (3)−0.0404 (2)0.0446 (8)
C24−0.0483 (3)−0.1808 (3)−0.0900 (3)0.0552 (10)
H24−0.084 (2)−0.193 (3)−0.1480 (19)0.060 (11)*
C250.0612 (3)−0.1618 (3)−0.0495 (3)0.0599 (10)
H250.1067 (18)−0.164 (2)−0.0805 (16)0.035 (8)*
C260.1047 (2)−0.1379 (3)0.0399 (2)0.0513 (9)
C270.0439 (2)−0.1332 (3)0.0925 (2)0.0501 (10)
H270.0727 (17)−0.120 (2)0.1503 (16)0.034 (9)*
C28−0.0653 (2)−0.1544 (3)0.0505 (2)0.0443 (8)
C29−0.1191 (3)−0.1497 (4)0.1850 (2)0.0545 (11)
H29A−0.1731 (19)−0.188 (2)0.1991 (16)0.045 (9)*
H29B−0.056 (2)−0.198 (3)0.2144 (19)0.068 (11)*
C30−0.1031 (3)−0.0315 (4)0.2208 (3)0.0592 (11)
H30B−0.049 (2)0.010 (3)0.200 (2)0.077 (11)*
H30A−0.162 (2)0.016 (3)0.195 (2)0.067 (12)*
C31−0.0728 (4)−0.0318 (4)0.3219 (3)0.0771 (13)
H31B−0.002 (3)−0.071 (3)0.355 (2)0.112 (17)*
H31A−0.133 (3)−0.073 (3)0.333 (2)0.103 (14)*
C32−0.0463 (3)0.0819 (4)0.3617 (2)0.0941 (14)
H32A0.01220.11320.34830.129 (9)*
H32B−0.02490.07660.42520.129 (9)*
H32C−0.10900.12950.33760.129 (9)*
U11U22U33U12U13U23
Br10.03753 (19)0.1118 (4)0.0741 (3)0.0122 (2)0.01790 (17)0.0168 (3)
O10.0405 (12)0.082 (2)0.0631 (16)0.0147 (13)0.0090 (11)−0.0007 (14)
O20.0450 (13)0.081 (2)0.0662 (16)−0.0181 (13)0.0076 (12)−0.0127 (15)
N10.0369 (14)0.046 (2)0.0473 (17)−0.0027 (15)0.0110 (12)−0.0079 (17)
C10.0397 (19)0.060 (3)0.039 (2)−0.0006 (19)0.0107 (16)0.001 (2)
C20.0372 (17)0.062 (3)0.038 (2)−0.0066 (19)0.0086 (15)0.003 (2)
C30.0376 (17)0.049 (3)0.038 (2)−0.0040 (19)0.0091 (15)−0.005 (2)
C40.056 (2)0.045 (3)0.051 (2)−0.007 (2)0.0165 (18)−0.006 (2)
C50.053 (2)0.051 (3)0.056 (2)0.010 (2)0.0202 (19)0.002 (2)
C60.0317 (16)0.069 (3)0.039 (2)0.006 (2)0.0095 (15)0.005 (2)
C70.0361 (18)0.049 (3)0.042 (2)−0.008 (2)0.0114 (16)−0.003 (2)
C80.0375 (17)0.044 (2)0.0305 (18)0.0009 (18)0.0100 (14)0.0031 (18)
C90.052 (2)0.043 (3)0.053 (3)0.005 (2)0.016 (2)−0.007 (2)
C100.072 (3)0.050 (3)0.064 (3)−0.009 (2)0.019 (2)−0.004 (3)
C110.087 (3)0.075 (4)0.077 (3)−0.005 (3)0.020 (3)0.003 (3)
C120.121 (4)0.080 (4)0.107 (4)−0.018 (3)0.032 (3)−0.006 (4)
Br20.0453 (2)0.0909 (4)0.0969 (3)0.0008 (2)0.0285 (2)−0.0097 (3)
O30.0427 (12)0.090 (2)0.0790 (17)−0.0143 (13)0.0160 (12)−0.0119 (15)
O40.0672 (15)0.094 (2)0.0514 (16)−0.0202 (15)−0.0066 (13)−0.0106 (16)
N20.0385 (14)0.070 (2)0.0342 (16)−0.0056 (14)0.0078 (12)−0.0067 (16)
C210.048 (2)0.059 (3)0.049 (2)−0.008 (2)0.0089 (18)−0.010 (2)
C220.055 (2)0.042 (3)0.052 (2)−0.0093 (19)0.0065 (18)−0.004 (2)
C230.0489 (19)0.043 (2)0.036 (2)−0.0037 (17)0.0100 (17)−0.0023 (19)
C240.072 (3)0.050 (3)0.036 (2)−0.003 (2)0.012 (2)−0.003 (2)
C250.069 (3)0.063 (3)0.059 (3)0.007 (2)0.036 (2)0.003 (2)
C260.0444 (18)0.050 (3)0.057 (2)0.0006 (17)0.0175 (18)−0.001 (2)
C270.0423 (19)0.064 (3)0.038 (2)0.0006 (18)0.0095 (18)−0.006 (2)
C280.0395 (17)0.050 (2)0.038 (2)−0.0023 (16)0.0089 (16)−0.0028 (19)
C290.048 (2)0.070 (3)0.048 (2)−0.007 (2)0.0202 (19)−0.004 (2)
C300.057 (2)0.064 (3)0.058 (3)−0.006 (2)0.023 (2)−0.008 (3)
C310.103 (4)0.076 (4)0.065 (3)−0.021 (3)0.046 (3)−0.020 (3)
C320.116 (3)0.101 (4)0.076 (3)−0.027 (3)0.048 (2)−0.029 (3)
Br1—C61.906 (3)Br2—C261.907 (3)
O1—C11.214 (3)O3—C211.209 (3)
O2—C21.210 (3)O4—C221.208 (3)
N1—C11.375 (3)N2—C211.373 (3)
N1—C81.411 (4)N2—C281.401 (3)
N1—C91.425 (4)N2—C291.467 (4)
C1—C21.545 (4)C21—C221.558 (4)
C2—C31.468 (4)C22—C231.465 (4)
C3—C41.370 (4)C23—C241.370 (4)
C3—C81.395 (4)C23—C281.391 (4)
C4—C51.387 (4)C24—C251.371 (4)
C4—H40.99 (3)C24—H240.89 (3)
C5—C61.366 (4)C25—C261.372 (4)
C5—H51.00 (3)C25—H250.92 (2)
C6—C71.379 (4)C26—C271.382 (4)
C7—C81.386 (4)C27—C281.374 (4)
C7—H70.95 (3)C27—H270.88 (2)
C9—C101.496 (5)C29—C301.503 (5)
C9—H9A1.05 (3)C29—H29A0.95 (3)
C9—H9B0.87 (3)C29—H29B0.98 (3)
C10—C111.536 (6)C30—C311.532 (5)
C10—H10B1.03 (3)C30—H30B1.04 (3)
C10—H10A0.99 (3)C30—H30A0.93 (3)
C11—C121.464 (6)C31—C321.481 (5)
C11—H11A0.94 (4)C31—H31B1.00 (4)
C11—H11B1.01 (3)C31—H31A1.01 (4)
C12—H12A0.9600C32—H32A0.9600
C12—H12B0.9600C32—H32B0.9600
C12—H12C0.9600C32—H32C0.9600
C1—N1—C8110.0 (3)C21—N2—C28110.9 (2)
C1—N1—C9124.8 (3)C21—N2—C29123.9 (3)
C8—N1—C9125.3 (3)C28—N2—C29124.9 (2)
O1—C1—N1126.3 (3)O3—C21—N2127.2 (3)
O1—C1—C2127.4 (3)O3—C21—C22127.0 (3)
N1—C1—C2106.3 (3)N2—C21—C22105.7 (3)
O2—C2—C3130.8 (4)O4—C22—C23131.7 (3)
O2—C2—C1123.8 (3)O4—C22—C21123.5 (3)
C3—C2—C1105.5 (3)C23—C22—C21104.7 (3)
C4—C3—C8121.5 (3)C24—C23—C28120.3 (3)
C4—C3—C2132.0 (3)C24—C23—C22132.2 (3)
C8—C3—C2106.5 (3)C28—C23—C22107.4 (3)
C3—C4—C5118.2 (4)C23—C24—C25119.6 (3)
C3—C4—H4120.7 (16)C23—C24—H24115.6 (18)
C5—C4—H4120.8 (16)C25—C24—H24124.7 (19)
C6—C5—C4119.1 (4)C24—C25—C26119.0 (3)
C6—C5—H5122.6 (15)C24—C25—H25122.3 (15)
C4—C5—H5118.3 (15)C26—C25—H25118.7 (15)
C5—C6—C7124.8 (3)C25—C26—C27123.4 (3)
C5—C6—Br1118.4 (3)C25—C26—Br2119.2 (3)
C7—C6—Br1116.8 (3)C27—C26—Br2117.4 (3)
C6—C7—C8115.3 (3)C28—C27—C26116.3 (3)
C6—C7—H7125.2 (15)C28—C27—H27120.7 (16)
C8—C7—H7119.5 (15)C26—C27—H27123.0 (16)
C7—C8—C3121.1 (3)C27—C28—C23121.4 (3)
C7—C8—N1127.1 (3)C27—C28—N2127.3 (3)
C3—C8—N1111.8 (3)C23—C28—N2111.3 (2)
N1—C9—C10113.9 (3)N2—C29—C30114.5 (3)
N1—C9—H9A110.8 (17)N2—C29—H29A110.0 (15)
C10—C9—H9A107.0 (17)C30—C29—H29A111.5 (17)
N1—C9—H9B111 (2)N2—C29—H29B106.1 (17)
C10—C9—H9B108 (2)C30—C29—H29B112.8 (18)
H9A—C9—H9B106 (3)H29A—C29—H29B101 (2)
C9—C10—C11110.1 (4)C29—C30—C31110.6 (4)
C9—C10—H10B108.8 (16)C29—C30—H30B109.3 (18)
C11—C10—H10B112.8 (16)C31—C30—H30B115.0 (17)
C9—C10—H10A109.7 (18)C29—C30—H30A115 (2)
C11—C10—H10A114.1 (19)C31—C30—H30A109 (2)
H10B—C10—H10A101 (2)H30B—C30—H30A98 (3)
C12—C11—C10114.3 (4)C32—C31—C30112.8 (4)
C12—C11—H11A91 (3)C32—C31—H31B100 (2)
C10—C11—H11A111 (2)C30—C31—H31B113 (2)
C12—C11—H11B101 (2)C32—C31—H31A116 (2)
C10—C11—H11B108 (2)C30—C31—H31A107 (2)
H11A—C11—H11B129 (3)H31B—C31—H31A109 (3)
C11—C12—H12A109.5C31—C32—H32A109.5
C11—C12—H12B109.5C31—C32—H32B109.5
H12A—C12—H12B109.5H32A—C32—H32B109.5
C11—C12—H12C109.5C31—C32—H32C109.5
H12A—C12—H12C109.5H32A—C32—H32C109.5
H12B—C12—H12C109.5H32B—C32—H32C109.5
C8—N1—C1—O1179.0 (3)C28—N2—C21—O3178.2 (4)
C9—N1—C1—O10.6 (5)C29—N2—C21—O35.0 (6)
C8—N1—C1—C2−1.6 (3)C28—N2—C21—C22−0.5 (4)
C9—N1—C1—C2180.0 (3)C29—N2—C21—C22−173.6 (3)
O1—C1—C2—O20.6 (5)O3—C21—C22—O41.8 (6)
N1—C1—C2—O2−178.8 (3)N2—C21—C22—O4−179.6 (3)
O1—C1—C2—C3−179.3 (3)O3—C21—C22—C23−178.2 (3)
N1—C1—C2—C31.3 (3)N2—C21—C22—C230.4 (3)
O2—C2—C3—C40.2 (6)O4—C22—C23—C24−2.7 (7)
C1—C2—C3—C4−180.0 (3)C21—C22—C23—C24177.3 (4)
O2—C2—C3—C8179.6 (3)O4—C22—C23—C28179.8 (4)
C1—C2—C3—C8−0.5 (3)C21—C22—C23—C28−0.2 (4)
C8—C3—C4—C50.7 (5)C28—C23—C24—C25−0.3 (5)
C2—C3—C4—C5180.0 (3)C22—C23—C24—C25−177.6 (4)
C3—C4—C5—C6−0.5 (5)C23—C24—C25—C26−0.8 (5)
C4—C5—C6—C7−0.2 (5)C24—C25—C26—C270.8 (6)
C4—C5—C6—Br1−179.9 (2)C24—C25—C26—Br2−179.0 (3)
C5—C6—C7—C80.8 (5)C25—C26—C27—C280.2 (5)
Br1—C6—C7—C8−179.6 (2)Br2—C26—C27—C28−180.0 (2)
C6—C7—C8—C3−0.6 (4)C26—C27—C28—C23−1.3 (5)
C6—C7—C8—N1−179.6 (3)C26—C27—C28—N2177.9 (3)
C4—C3—C8—C7−0.1 (5)C24—C23—C28—C271.4 (5)
C2—C3—C8—C7−179.6 (3)C22—C23—C28—C27179.3 (3)
C4—C3—C8—N1179.1 (3)C24—C23—C28—N2−177.9 (3)
C2—C3—C8—N1−0.4 (3)C22—C23—C28—N20.0 (4)
C1—N1—C8—C7−179.6 (3)C21—N2—C28—C27−179.0 (3)
C9—N1—C8—C7−1.2 (5)C29—N2—C28—C27−5.9 (5)
C1—N1—C8—C31.3 (3)C21—N2—C28—C230.3 (4)
C9—N1—C8—C3179.7 (3)C29—N2—C28—C23173.4 (3)
C1—N1—C9—C1089.8 (4)C21—N2—C29—C30−106.6 (4)
C8—N1—C9—C10−88.3 (4)C28—N2—C29—C3081.2 (4)
N1—C9—C10—C11179.3 (3)N2—C29—C30—C31−177.1 (3)
C9—C10—C11—C12172.4 (4)C29—C30—C31—C32174.8 (4)
D—H···AD—HH···AD···AD—H···A
C7—H7···O3i0.95 (3)2.44 (3)3.367 (5)165 (2)
Table 1

Selected bond lengths (Å)

N1—C11.375 (3)
N1—C81.411 (4)
N1—C91.425 (4)
C1—C21.545 (4)
N2—C211.373 (3)
N2—C281.401 (3)
N2—C291.467 (4)
C21—C221.558 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O3i0.95 (3)2.44 (3)3.367 (5)165 (2)

Symmetry code: (i) .

  4 in total

1.  Isatin compounds as noncovalent SARS coronavirus 3C-like protease inhibitors.

Authors:  Lu Zhou; Ying Liu; Weilin Zhang; Ping Wei; Changkang Huang; Jianfeng Pei; Yaxia Yuan; Luhua Lai
Journal:  J Med Chem       Date:  2006-06-15       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Combinatorial optimization of isatin-beta-thiosemicarbazones as anti-poxvirus agents.

Authors:  Michael C Pirrung; Sunil V Pansare; Koushik Das Sarma; Kathy A Keith; Earl R Kern
Journal:  J Med Chem       Date:  2005-04-21       Impact factor: 7.446

4.  5-pyrrolidinylsulfonyl isatins as a potential tool for the molecular imaging of caspases in apoptosis.

Authors:  Klaus Kopka; Andreas Faust; Petra Keul; Stefan Wagner; Hans-Jörg Breyholz; Carsten Höltke; Otmar Schober; Michael Schäfers; Bodo Levkau
Journal:  J Med Chem       Date:  2006-11-16       Impact factor: 7.446

  4 in total

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