Literature DB >> 21581577

2-Amino-benzimidazolium hydrogen sulfate.

Wei You, Ying Fan, Hui-Fen Qian, Cheng Yao, Wei Huang.   

Abstract

In the title salt, C(7)H(8)N(3) (+)·HSO(4) (-), the benzimdazole ring system is planar [mean deviation 0.0086 (1) Å]. In the crystal, N-H⋯O and O-H⋯O hydrogen-bond inter-actions give rise to a layer motif.

Entities:  

Year:  2008        PMID: 21581577      PMCID: PMC2968037          DOI: 10.1107/S1600536808041706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: El-Medania et al. (2003 ▶); Yeşilel et al. (2008 ▶).

Experimental

Crystal data

C7H8N3HSO4 M = 231.23 Monoclinic, a = 10.855 (6) Å b = 13.049 (7) Å c = 7.082 (4) Å β = 99.025 (7)° V = 990.7 (9) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 291 (2) K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.950, T max = 0.968 5083 measured reflections 1841 independent reflections 1408 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 0.96 1841 reflections 136 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041706/ng2522sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041706/ng2522Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8N3+·HSO4F(000) = 480
Mr = 231.23Dx = 1.550 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1841 reflections
a = 10.855 (6) Åθ = 1.0–1.0°
b = 13.049 (7) ŵ = 0.33 mm1
c = 7.082 (4) ÅT = 291 K
β = 99.025 (7)°Block, colourless
V = 990.7 (9) Å30.16 × 0.12 × 0.10 mm
Z = 4
Bruker SMART diffractometer1841 independent reflections
Radiation source: fine-focus sealed tube1408 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −13→13
Tmin = 0.950, Tmax = 0.968k = −11→15
5083 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0593P)2] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max = 0.001
1841 reflectionsΔρmax = 0.23 e Å3
136 parametersΔρmin = −0.35 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0
Experimental. The structure was solved by direct methods (Bruker, 2000) and successive difference Fourier syntheses.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.61393 (19)0.67017 (16)0.3926 (3)0.0400 (5)
C20.80252 (18)0.71967 (16)0.5357 (3)0.0387 (5)
C30.9247 (2)0.72581 (18)0.6229 (3)0.0483 (6)
H30.97250.66740.65570.058*
C40.9730 (2)0.82273 (19)0.6594 (3)0.0533 (6)
H41.05550.82960.71780.064*
C50.9026 (2)0.91056 (19)0.6120 (3)0.0563 (6)
H50.93820.97460.64070.068*
C60.7787 (2)0.90386 (17)0.5216 (3)0.0497 (6)
H60.73100.96200.48660.060*
C70.73133 (18)0.80702 (16)0.4872 (3)0.0385 (5)
N10.72523 (15)0.63593 (13)0.4769 (2)0.0410 (4)
H1A0.74600.57250.49250.049*
N20.61415 (15)0.77282 (13)0.3989 (2)0.0429 (5)
H2A0.55210.81160.35550.051*
N30.51968 (16)0.61327 (14)0.3154 (3)0.0534 (5)
H3A0.52650.54760.31630.064*
H3B0.45110.64160.26390.064*
O10.21109 (12)0.84704 (11)0.3128 (2)0.0508 (4)
H1B0.24500.81550.40690.076*
O20.32882 (14)0.75437 (11)0.1058 (2)0.0533 (5)
O30.41587 (12)0.90419 (10)0.2672 (2)0.0494 (4)
O40.23730 (14)0.91989 (11)0.0168 (2)0.0539 (4)
S10.30277 (5)0.85757 (4)0.16657 (8)0.0404 (2)
U11U22U33U12U13U23
C10.0399 (11)0.0385 (12)0.0414 (12)0.0044 (9)0.0057 (10)−0.0029 (9)
C20.0419 (12)0.0400 (12)0.0344 (11)0.0037 (9)0.0069 (9)−0.0013 (9)
C30.0444 (12)0.0581 (15)0.0420 (13)0.0089 (11)0.0057 (10)0.0033 (11)
C40.0416 (13)0.0658 (17)0.0518 (15)−0.0066 (11)0.0051 (11)−0.0039 (12)
C50.0584 (15)0.0548 (16)0.0577 (15)−0.0130 (12)0.0151 (12)−0.0092 (12)
C60.0537 (14)0.0407 (13)0.0552 (15)0.0009 (10)0.0103 (12)−0.0020 (11)
C70.0401 (11)0.0386 (12)0.0371 (12)0.0045 (9)0.0073 (9)−0.0016 (9)
N10.0438 (10)0.0322 (10)0.0453 (11)0.0091 (7)0.0017 (8)−0.0001 (7)
N20.0404 (10)0.0343 (10)0.0520 (12)0.0109 (7)0.0013 (8)−0.0010 (8)
N30.0447 (10)0.0400 (11)0.0719 (14)0.0050 (8)−0.0019 (10)−0.0067 (10)
O10.0408 (8)0.0495 (10)0.0611 (10)0.0055 (7)0.0047 (8)0.0063 (7)
O20.0640 (10)0.0331 (9)0.0582 (10)0.0091 (7)−0.0047 (8)−0.0073 (7)
O30.0387 (8)0.0372 (9)0.0669 (10)−0.0035 (6)−0.0086 (7)0.0032 (7)
O40.0609 (9)0.0381 (9)0.0548 (10)0.0046 (7)−0.0153 (8)0.0072 (7)
S10.0402 (3)0.0288 (3)0.0484 (4)0.0019 (2)−0.0045 (2)0.0007 (2)
C1—N31.312 (3)C6—C71.372 (3)
C1—N11.338 (2)C6—H60.9300
C1—N21.340 (3)C7—N21.400 (2)
C2—C31.375 (3)N1—H1A0.8600
C2—C71.390 (3)N2—H2A0.8600
C2—N11.401 (3)N3—H3A0.8600
C3—C41.378 (3)N3—H3B0.8600
C3—H30.9300O1—S11.5510 (18)
C4—C51.389 (3)O1—H1B0.8200
C4—H40.9300O2—S11.4549 (16)
C5—C61.398 (3)O3—S11.4528 (14)
C5—H50.9300O4—S11.4336 (15)
N3—C1—N1126.0 (2)C6—C7—N2131.49 (19)
N3—C1—N2125.21 (19)C2—C7—N2106.26 (18)
N1—C1—N2108.79 (18)C1—N1—C2109.21 (17)
C3—C2—C7121.5 (2)C1—N1—H1A125.4
C3—C2—N1132.04 (19)C2—N1—H1A125.4
C7—C2—N1106.42 (17)C1—N2—C7109.28 (16)
C2—C3—C4116.7 (2)C1—N2—H2A125.4
C2—C3—H3121.7C7—N2—H2A125.4
C4—C3—H3121.7C1—N3—H3A120.0
C3—C4—C5122.2 (2)C1—N3—H3B120.0
C3—C4—H4118.9H3A—N3—H3B120.0
C5—C4—H4118.9S1—O1—H1B109.5
C4—C5—C6120.8 (2)O4—S1—O3114.09 (9)
C4—C5—H5119.6O4—S1—O2113.76 (10)
C6—C5—H5119.6O3—S1—O2110.13 (9)
C7—C6—C5116.5 (2)O4—S1—O1104.41 (10)
C7—C6—H6121.8O3—S1—O1106.91 (10)
C5—C6—H6121.8O2—S1—O1106.88 (10)
C6—C7—C2122.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.862.002.848 (3)167
O1—H1B···O2ii0.821.802.619 (2)176
N2—H2A···O30.861.942.795 (2)177
N3—H3A···O3i0.862.092.899 (3)157
N3—H3B···O20.862.172.987 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.862.002.848 (3)167
O1—H1B⋯O2ii0.821.802.619 (2)176
N2—H2A⋯O30.861.942.795 (2)177
N3—H3A⋯O3i0.862.092.899 (3)157
N3—H3B⋯O20.862.172.987 (2)158

Symmetry codes: (i) ; (ii) .

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