| Literature DB >> 21581577 |
Wei You, Ying Fan, Hui-Fen Qian, Cheng Yao, Wei Huang.
Abstract
In the title salt, C(7)H(8)N(3) (+)·HSO(4) (-), the benzimdazole ring system is planar [mean deviation 0.0086 (1) Å]. In the crystal, N-H⋯O and O-H⋯O hydrogen-bond inter-actions give rise to a layer motif.Entities:
Year: 2008 PMID: 21581577 PMCID: PMC2968037 DOI: 10.1107/S1600536808041706
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H8N3+·HSO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1841 reflections |
| θ = 1.0–1.0° | |
| µ = 0.33 mm−1 | |
| β = 99.025 (7)° | Block, colourless |
| 0.16 × 0.12 × 0.10 mm | |
| Bruker SMART diffractometer | 1841 independent reflections |
| Radiation source: fine-focus sealed tube | 1408 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 5083 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1841 reflections | Δρmax = 0.23 e Å−3 |
| 136 parameters | Δρmin = −0.35 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0 |
| Experimental. The structure was solved by direct methods (Bruker, 2000) and successive difference Fourier syntheses. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.61393 (19) | 0.67017 (16) | 0.3926 (3) | 0.0400 (5) | |
| C2 | 0.80252 (18) | 0.71967 (16) | 0.5357 (3) | 0.0387 (5) | |
| C3 | 0.9247 (2) | 0.72581 (18) | 0.6229 (3) | 0.0483 (6) | |
| H3 | 0.9725 | 0.6674 | 0.6557 | 0.058* | |
| C4 | 0.9730 (2) | 0.82273 (19) | 0.6594 (3) | 0.0533 (6) | |
| H4 | 1.0555 | 0.8296 | 0.7178 | 0.064* | |
| C5 | 0.9026 (2) | 0.91056 (19) | 0.6120 (3) | 0.0563 (6) | |
| H5 | 0.9382 | 0.9746 | 0.6407 | 0.068* | |
| C6 | 0.7787 (2) | 0.90386 (17) | 0.5216 (3) | 0.0497 (6) | |
| H6 | 0.7310 | 0.9620 | 0.4866 | 0.060* | |
| C7 | 0.73133 (18) | 0.80702 (16) | 0.4872 (3) | 0.0385 (5) | |
| N1 | 0.72523 (15) | 0.63593 (13) | 0.4769 (2) | 0.0410 (4) | |
| H1A | 0.7460 | 0.5725 | 0.4925 | 0.049* | |
| N2 | 0.61415 (15) | 0.77282 (13) | 0.3989 (2) | 0.0429 (5) | |
| H2A | 0.5521 | 0.8116 | 0.3555 | 0.051* | |
| N3 | 0.51968 (16) | 0.61327 (14) | 0.3154 (3) | 0.0534 (5) | |
| H3A | 0.5265 | 0.5476 | 0.3163 | 0.064* | |
| H3B | 0.4511 | 0.6416 | 0.2639 | 0.064* | |
| O1 | 0.21109 (12) | 0.84704 (11) | 0.3128 (2) | 0.0508 (4) | |
| H1B | 0.2450 | 0.8155 | 0.4069 | 0.076* | |
| O2 | 0.32882 (14) | 0.75437 (11) | 0.1058 (2) | 0.0533 (5) | |
| O3 | 0.41587 (12) | 0.90419 (10) | 0.2672 (2) | 0.0494 (4) | |
| O4 | 0.23730 (14) | 0.91989 (11) | 0.0168 (2) | 0.0539 (4) | |
| S1 | 0.30277 (5) | 0.85757 (4) | 0.16657 (8) | 0.0404 (2) |
| C1 | 0.0399 (11) | 0.0385 (12) | 0.0414 (12) | 0.0044 (9) | 0.0057 (10) | −0.0029 (9) |
| C2 | 0.0419 (12) | 0.0400 (12) | 0.0344 (11) | 0.0037 (9) | 0.0069 (9) | −0.0013 (9) |
| C3 | 0.0444 (12) | 0.0581 (15) | 0.0420 (13) | 0.0089 (11) | 0.0057 (10) | 0.0033 (11) |
| C4 | 0.0416 (13) | 0.0658 (17) | 0.0518 (15) | −0.0066 (11) | 0.0051 (11) | −0.0039 (12) |
| C5 | 0.0584 (15) | 0.0548 (16) | 0.0577 (15) | −0.0130 (12) | 0.0151 (12) | −0.0092 (12) |
| C6 | 0.0537 (14) | 0.0407 (13) | 0.0552 (15) | 0.0009 (10) | 0.0103 (12) | −0.0020 (11) |
| C7 | 0.0401 (11) | 0.0386 (12) | 0.0371 (12) | 0.0045 (9) | 0.0073 (9) | −0.0016 (9) |
| N1 | 0.0438 (10) | 0.0322 (10) | 0.0453 (11) | 0.0091 (7) | 0.0017 (8) | −0.0001 (7) |
| N2 | 0.0404 (10) | 0.0343 (10) | 0.0520 (12) | 0.0109 (7) | 0.0013 (8) | −0.0010 (8) |
| N3 | 0.0447 (10) | 0.0400 (11) | 0.0719 (14) | 0.0050 (8) | −0.0019 (10) | −0.0067 (10) |
| O1 | 0.0408 (8) | 0.0495 (10) | 0.0611 (10) | 0.0055 (7) | 0.0047 (8) | 0.0063 (7) |
| O2 | 0.0640 (10) | 0.0331 (9) | 0.0582 (10) | 0.0091 (7) | −0.0047 (8) | −0.0073 (7) |
| O3 | 0.0387 (8) | 0.0372 (9) | 0.0669 (10) | −0.0035 (6) | −0.0086 (7) | 0.0032 (7) |
| O4 | 0.0609 (9) | 0.0381 (9) | 0.0548 (10) | 0.0046 (7) | −0.0153 (8) | 0.0072 (7) |
| S1 | 0.0402 (3) | 0.0288 (3) | 0.0484 (4) | 0.0019 (2) | −0.0045 (2) | 0.0007 (2) |
| C1—N3 | 1.312 (3) | C6—C7 | 1.372 (3) |
| C1—N1 | 1.338 (2) | C6—H6 | 0.9300 |
| C1—N2 | 1.340 (3) | C7—N2 | 1.400 (2) |
| C2—C3 | 1.375 (3) | N1—H1A | 0.8600 |
| C2—C7 | 1.390 (3) | N2—H2A | 0.8600 |
| C2—N1 | 1.401 (3) | N3—H3A | 0.8600 |
| C3—C4 | 1.378 (3) | N3—H3B | 0.8600 |
| C3—H3 | 0.9300 | O1—S1 | 1.5510 (18) |
| C4—C5 | 1.389 (3) | O1—H1B | 0.8200 |
| C4—H4 | 0.9300 | O2—S1 | 1.4549 (16) |
| C5—C6 | 1.398 (3) | O3—S1 | 1.4528 (14) |
| C5—H5 | 0.9300 | O4—S1 | 1.4336 (15) |
| N3—C1—N1 | 126.0 (2) | C6—C7—N2 | 131.49 (19) |
| N3—C1—N2 | 125.21 (19) | C2—C7—N2 | 106.26 (18) |
| N1—C1—N2 | 108.79 (18) | C1—N1—C2 | 109.21 (17) |
| C3—C2—C7 | 121.5 (2) | C1—N1—H1A | 125.4 |
| C3—C2—N1 | 132.04 (19) | C2—N1—H1A | 125.4 |
| C7—C2—N1 | 106.42 (17) | C1—N2—C7 | 109.28 (16) |
| C2—C3—C4 | 116.7 (2) | C1—N2—H2A | 125.4 |
| C2—C3—H3 | 121.7 | C7—N2—H2A | 125.4 |
| C4—C3—H3 | 121.7 | C1—N3—H3A | 120.0 |
| C3—C4—C5 | 122.2 (2) | C1—N3—H3B | 120.0 |
| C3—C4—H4 | 118.9 | H3A—N3—H3B | 120.0 |
| C5—C4—H4 | 118.9 | S1—O1—H1B | 109.5 |
| C4—C5—C6 | 120.8 (2) | O4—S1—O3 | 114.09 (9) |
| C4—C5—H5 | 119.6 | O4—S1—O2 | 113.76 (10) |
| C6—C5—H5 | 119.6 | O3—S1—O2 | 110.13 (9) |
| C7—C6—C5 | 116.5 (2) | O4—S1—O1 | 104.41 (10) |
| C7—C6—H6 | 121.8 | O3—S1—O1 | 106.91 (10) |
| C5—C6—H6 | 121.8 | O2—S1—O1 | 106.88 (10) |
| C6—C7—C2 | 122.2 (2) |
| H··· | ||||
| N1—H1A···O4i | 0.86 | 2.00 | 2.848 (3) | 167 |
| O1—H1B···O2ii | 0.82 | 1.80 | 2.619 (2) | 176 |
| N2—H2A···O3 | 0.86 | 1.94 | 2.795 (2) | 177 |
| N3—H3A···O3i | 0.86 | 2.09 | 2.899 (3) | 157 |
| N3—H3B···O2 | 0.86 | 2.17 | 2.987 (2) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.00 | 2.848 (3) | 167 |
| O1—H1 | 0.82 | 1.80 | 2.619 (2) | 176 |
| N2—H2 | 0.86 | 1.94 | 2.795 (2) | 177 |
| N3—H3 | 0.86 | 2.09 | 2.899 (3) | 157 |
| N3—H3 | 0.86 | 2.17 | 2.987 (2) | 158 |
Symmetry codes: (i) ; (ii) .