| Literature DB >> 21581482 |
Zhan-Qiang Fang1, Rong-Hua Zeng, Yan-Ting Li, Shuo Yang, Zhao-Feng Song.
Abstract
In the crystal structure of the title complex, [Tb(C(6)H(4)NO(2))(C(2)O(4))(H(2)O)(2)](n), the Tb(III) ion is coordinated by two O atoms from two isonicotinate (inic) anions, four O atoms of two oxalate anions, and two water mol-ecules, displaying a distorted square-antiprismatic geometry. The Tb(III) ion, the inic anion and the water mol-ecules occupy general positions. One of the two crystallographically independent oxalate anions is located on a center of inversion, whereas the second is located on the twofold rotation axis. The carboxyl-ate groups of the inic and oxalate anions link the terbium metal centres into layers. These layers are connected by O-H⋯O and N-H⋯O hydrogen bonding into a three-dimensional network.Entities:
Year: 2008 PMID: 21581482 PMCID: PMC2968019 DOI: 10.1107/S1600536808042682
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Tb(C6H4NO2)(C2O4)(H2O)2] | |
| Monoclinic, | Mo |
| Cell parameters from 2410 reflections | |
| θ = 2.4–27.7° | |
| µ = 6.72 mm−1 | |
| β = 112.414 (1)° | |
| Block, colourless | |
| 0.23 × 0.22 × 0.20 mm |
| Bruker APEXII area-detector diffractometer | 1674 reflections with |
| Radiation source: fine-focus sealed tube | |
| φ and ω scans | θmax = 25.2°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 5243 measured reflections | |
| 1907 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1907 reflections | (Δ/σ)max = 0.002 |
| 163 parameters | Δρmax = 1.40 e Å−3 |
| 6 restraints | Δρmin = −1.31 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Tb1 | 0.824056 (12) | 0.03238 (2) | 0.574780 (18) | 0.01553 (10) | |
| O5 | 0.9618 (2) | −0.0185 (4) | 0.6050 (3) | 0.0289 (9) | |
| O2 | 0.6877 (2) | 0.0558 (4) | 0.4672 (3) | 0.0326 (9) | |
| O3 | 0.8029 (2) | −0.1491 (3) | 0.4403 (3) | 0.0239 (8) | |
| C8 | 1.0149 (3) | −0.0110 (5) | 0.7019 (4) | 0.0192 (11) | |
| O6 | 1.0905 (2) | −0.0055 (4) | 0.7291 (3) | 0.0272 (9) | |
| C1 | 0.6278 (3) | 0.1294 (5) | 0.4198 (4) | 0.0215 (11) | |
| C2 | 0.5442 (3) | 0.0692 (5) | 0.3902 (4) | 0.0172 (10) | |
| C3 | 0.4756 (3) | 0.1501 (6) | 0.3627 (4) | 0.0264 (12) | |
| H3 | 0.4800 | 0.2434 | 0.3618 | 0.032* | |
| C6 | 0.5336 (3) | −0.0690 (5) | 0.3874 (4) | 0.0241 (11) | |
| H6 | 0.5781 | −0.1263 | 0.4050 | 0.029* | |
| C4 | 0.4010 (3) | 0.0890 (6) | 0.3366 (4) | 0.0315 (13) | |
| H4 | 0.3556 | 0.1438 | 0.3206 | 0.038* | |
| C5 | 0.4563 (3) | −0.1211 (5) | 0.3584 (5) | 0.0314 (13) | |
| H5 | 0.4500 | −0.2142 | 0.3564 | 0.038* | |
| N1 | 0.3903 (3) | −0.0438 (5) | 0.3330 (4) | 0.0309 (11) | |
| C7 | 0.7582 (3) | −0.2447 (5) | 0.4457 (4) | 0.0201 (11) | |
| O4 | 0.7261 (2) | −0.3320 (3) | 0.3724 (3) | 0.0252 (8) | |
| O1 | 0.6308 (2) | 0.2507 (4) | 0.3926 (3) | 0.0334 (9) | |
| O1W | 0.75857 (19) | 0.1250 (3) | 0.6941 (3) | 0.0228 (8) | |
| H1W | 0.7146 | 0.0877 | 0.6885 | 0.034* | |
| H2W | 0.7794 | 0.1546 | 0.7598 | 0.034* | |
| O2W | 0.8300 (2) | 0.1188 (4) | 0.4029 (3) | 0.0312 (9) | |
| H3W | 0.8554 | 0.0794 | 0.3691 | 0.047* | |
| H4W | 0.8051 | 0.1834 | 0.3631 | 0.047* |
| Tb1 | 0.01241 (14) | 0.01564 (15) | 0.01830 (15) | −0.00225 (9) | 0.00558 (10) | −0.00106 (9) |
| O5 | 0.0153 (18) | 0.048 (2) | 0.023 (2) | 0.0038 (17) | 0.0067 (16) | −0.0063 (18) |
| O2 | 0.0144 (18) | 0.052 (3) | 0.028 (2) | 0.0001 (18) | 0.0045 (16) | 0.001 (2) |
| O3 | 0.0271 (19) | 0.0201 (18) | 0.0287 (19) | −0.0097 (16) | 0.0153 (16) | −0.0047 (16) |
| C8 | 0.017 (3) | 0.018 (2) | 0.019 (3) | 0.003 (2) | 0.003 (2) | 0.000 (2) |
| O6 | 0.0132 (18) | 0.040 (2) | 0.027 (2) | 0.0019 (16) | 0.0068 (16) | −0.0024 (17) |
| C1 | 0.019 (3) | 0.031 (3) | 0.016 (2) | −0.006 (2) | 0.009 (2) | −0.007 (2) |
| C2 | 0.017 (2) | 0.021 (3) | 0.014 (2) | −0.005 (2) | 0.0058 (19) | 0.001 (2) |
| C3 | 0.023 (3) | 0.028 (3) | 0.033 (3) | 0.004 (2) | 0.017 (2) | 0.008 (2) |
| C6 | 0.019 (3) | 0.022 (3) | 0.031 (3) | −0.003 (2) | 0.010 (2) | 0.001 (2) |
| C4 | 0.019 (3) | 0.049 (4) | 0.030 (3) | 0.007 (3) | 0.014 (2) | 0.008 (3) |
| C5 | 0.036 (3) | 0.022 (3) | 0.040 (3) | −0.013 (3) | 0.018 (3) | −0.004 (3) |
| N1 | 0.023 (2) | 0.044 (3) | 0.026 (2) | −0.009 (2) | 0.010 (2) | −0.001 (2) |
| C7 | 0.019 (2) | 0.017 (3) | 0.023 (3) | 0.004 (2) | 0.006 (2) | 0.002 (2) |
| O4 | 0.033 (2) | 0.0225 (18) | 0.0218 (18) | −0.0081 (16) | 0.0128 (16) | −0.0050 (16) |
| O1 | 0.038 (2) | 0.027 (2) | 0.041 (2) | −0.0189 (18) | 0.0211 (19) | −0.0120 (19) |
| O1W | 0.0180 (17) | 0.027 (2) | 0.0260 (18) | −0.0064 (15) | 0.0116 (15) | −0.0071 (16) |
| O2W | 0.049 (2) | 0.024 (2) | 0.029 (2) | 0.0045 (18) | 0.0241 (18) | 0.0045 (17) |
| Tb1—O1i | 2.280 (3) | C2—C3 | 1.389 (7) |
| Tb1—O2 | 2.303 (3) | C3—C4 | 1.379 (7) |
| Tb1—O5 | 2.383 (3) | C3—H3 | 0.9300 |
| Tb1—O4ii | 2.385 (3) | C6—C5 | 1.380 (7) |
| Tb1—O2W | 2.427 (3) | C6—H6 | 0.9300 |
| Tb1—O3 | 2.435 (3) | C4—N1 | 1.330 (8) |
| Tb1—O6iii | 2.443 (4) | C4—H4 | 0.9300 |
| Tb1—O1W | 2.443 (3) | C5—N1 | 1.335 (7) |
| O5—C8 | 1.254 (6) | C5—H5 | 0.9300 |
| O2—C1 | 1.244 (6) | C7—O4 | 1.251 (6) |
| O3—C7 | 1.259 (6) | C7—C7ii | 1.545 (10) |
| C8—O6 | 1.256 (6) | O4—Tb1ii | 2.385 (3) |
| C8—C8iii | 1.529 (10) | O1—Tb1i | 2.280 (3) |
| O6—Tb1iii | 2.443 (4) | O1W—H1W | 0.8429 |
| C1—O1 | 1.261 (6) | O1W—H2W | 0.8420 |
| C1—C2 | 1.511 (6) | O2W—H3W | 0.8367 |
| C2—C6 | 1.383 (7) | O2W—H4W | 0.8365 |
| O1i—Tb1—O2 | 103.43 (14) | O6—C8—C8iii | 116.0 (5) |
| O1i—Tb1—O5 | 84.39 (13) | C8—O6—Tb1iii | 118.3 (3) |
| O2—Tb1—O5 | 154.22 (14) | O2—C1—O1 | 125.4 (5) |
| O1i—Tb1—O4ii | 151.43 (12) | O2—C1—C2 | 117.9 (5) |
| O2—Tb1—O4ii | 80.50 (13) | O1—C1—C2 | 116.7 (5) |
| O5—Tb1—O4ii | 104.46 (13) | C6—C2—C3 | 118.0 (4) |
| O1i—Tb1—O2W | 72.60 (12) | C6—C2—C1 | 120.7 (4) |
| O2—Tb1—O2W | 79.21 (13) | C3—C2—C1 | 121.3 (5) |
| O5—Tb1—O2W | 79.88 (13) | C4—C3—C2 | 118.6 (5) |
| O4ii—Tb1—O2W | 135.25 (12) | C4—C3—H3 | 120.7 |
| O1i—Tb1—O3 | 141.11 (12) | C2—C3—H3 | 120.7 |
| O2—Tb1—O3 | 78.56 (13) | C5—C6—C2 | 119.4 (5) |
| O5—Tb1—O3 | 80.16 (12) | C5—C6—H6 | 120.3 |
| O4ii—Tb1—O3 | 67.43 (11) | C2—C6—H6 | 120.3 |
| O2W—Tb1—O3 | 69.67 (11) | N1—C4—C3 | 123.8 (5) |
| O1i—Tb1—O6iii | 85.24 (13) | N1—C4—H4 | 118.1 |
| O2—Tb1—O6iii | 137.67 (13) | C3—C4—H4 | 118.1 |
| O5—Tb1—O6iii | 66.65 (12) | N1—C5—C6 | 122.9 (5) |
| O4ii—Tb1—O6iii | 74.06 (12) | N1—C5—H5 | 118.6 |
| O2W—Tb1—O6iii | 141.48 (12) | C6—C5—H5 | 118.6 |
| O3—Tb1—O6iii | 119.77 (12) | C4—N1—C5 | 117.4 (4) |
| O1i—Tb1—O1W | 75.34 (12) | O4—C7—O3 | 126.5 (5) |
| O2—Tb1—O1W | 72.48 (13) | O4—C7—C7ii | 117.1 (5) |
| O5—Tb1—O1W | 133.16 (12) | O3—C7—C7ii | 116.4 (5) |
| O4ii—Tb1—O1W | 79.12 (11) | C7—O4—Tb1ii | 118.1 (3) |
| O2W—Tb1—O1W | 130.27 (12) | C1—O1—Tb1i | 154.0 (4) |
| O3—Tb1—O1W | 138.71 (11) | Tb1—O1W—H1W | 115.5 |
| O6iii—Tb1—O1W | 69.91 (12) | Tb1—O1W—H2W | 129.8 |
| C8—O5—Tb1 | 119.1 (3) | H1W—O1W—H2W | 106.0 |
| C1—O2—Tb1 | 149.9 (4) | Tb1—O2W—H3W | 122.5 |
| C7—O3—Tb1 | 116.5 (3) | Tb1—O2W—H4W | 129.8 |
| O5—C8—O6 | 127.0 (5) | H3W—O2W—H4W | 107.4 |
| O5—C8—C8iii | 117.0 (5) |
| H··· | ||||
| O1W—H2W···O3iv | 0.84 | 2.22 | 2.992 (5) | 153 |
| O2W—H4W···O1Wi | 0.84 | 2.19 | 3.003 (5) | 163 |
| O1W—H1W···N1v | 0.84 | 1.83 | 2.661 (5) | 167 |
| O2W—H3W···O6vi | 0.84 | 2.01 | 2.836 (5) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.84 | 2.22 | 2.992 (5) | 153 |
| O2 | 0.84 | 2.19 | 3.003 (5) | 163 |
| O1 | 0.84 | 1.83 | 2.661 (5) | 167 |
| O2 | 0.84 | 2.01 | 2.836 (5) | 172 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .