Literature DB >> 21581482

Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Zhan-Qiang Fang1, Rong-Hua Zeng, Yan-Ting Li, Shuo Yang, Zhao-Feng Song.   

Abstract

In the crystal structure of the title complex, [Tb(C(6)H(4)NO(2))(C(2)O(4))(H(2)O)(2)](n), the Tb(III) ion is coordinated by two O atoms from two isonicotinate (inic) anions, four O atoms of two oxalate anions, and two water mol-ecules, displaying a distorted square-antiprismatic geometry. The Tb(III) ion, the inic anion and the water mol-ecules occupy general positions. One of the two crystallographically independent oxalate anions is located on a center of inversion, whereas the second is located on the twofold rotation axis. The carboxyl-ate groups of the inic and oxalate anions link the terbium metal centres into layers. These layers are connected by O-H⋯O and N-H⋯O hydrogen bonding into a three-dimensional network.

Entities:  

Year:  2008        PMID: 21581482      PMCID: PMC2968019          DOI: 10.1107/S1600536808042682

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background, see: Eddaoudi et al. (2001 ▶); Rizk et al. (2005 ▶). An independent determination of this structure is reported in the preceeding paper, see: Song et al. (2009 ▶).

Experimental

Crystal data

[Tb(C6H4NO2)(C2O4)(H2O)2] M = 405.07 Monoclinic, a = 17.7919 (18) Å b = 9.9259 (10) Å c = 12.9670 (13) Å β = 112.4140 (10)° V = 2117.0 (4) Å3 Z = 8 Mo Kα radiation μ = 6.72 mm−1 T = 296 (2) K 0.23 × 0.22 × 0.20 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2004 ▶) T min = 0.241, T max = 0.272 5243 measured reflections 1907 independent reflections 1674 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.063 S = 1.01 1907 reflections 163 parameters 6 restraints H-atom parameters constrained Δρmax = 1.40 e Å−3 Δρmin = −1.31 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042682/nc2118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042682/nc2118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Tb(C6H4NO2)(C2O4)(H2O)2]F(000) = 1536
Mr = 405.07Dx = 2.542 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 17.7919 (18) ÅCell parameters from 2410 reflections
b = 9.9259 (10) Åθ = 2.4–27.7°
c = 12.9670 (13) ŵ = 6.72 mm1
β = 112.414 (1)°T = 296 K
V = 2117.0 (4) Å3Block, colourless
Z = 80.23 × 0.22 × 0.20 mm
Bruker APEXII area-detector diffractometer1674 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
φ and ω scansθmax = 25.2°, θmin = 2.4°
Absorption correction: multi-scan (APEX2; Bruker, 2004)h = −21→20
Tmin = 0.241, Tmax = 0.272k = −5→11
5243 measured reflectionsl = −15→15
1907 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.063H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0363P)2] where P = (Fo2 + 2Fc2)/3
1907 reflections(Δ/σ)max = 0.002
163 parametersΔρmax = 1.40 e Å3
6 restraintsΔρmin = −1.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Tb10.824056 (12)0.03238 (2)0.574780 (18)0.01553 (10)
O50.9618 (2)−0.0185 (4)0.6050 (3)0.0289 (9)
O20.6877 (2)0.0558 (4)0.4672 (3)0.0326 (9)
O30.8029 (2)−0.1491 (3)0.4403 (3)0.0239 (8)
C81.0149 (3)−0.0110 (5)0.7019 (4)0.0192 (11)
O61.0905 (2)−0.0055 (4)0.7291 (3)0.0272 (9)
C10.6278 (3)0.1294 (5)0.4198 (4)0.0215 (11)
C20.5442 (3)0.0692 (5)0.3902 (4)0.0172 (10)
C30.4756 (3)0.1501 (6)0.3627 (4)0.0264 (12)
H30.48000.24340.36180.032*
C60.5336 (3)−0.0690 (5)0.3874 (4)0.0241 (11)
H60.5781−0.12630.40500.029*
C40.4010 (3)0.0890 (6)0.3366 (4)0.0315 (13)
H40.35560.14380.32060.038*
C50.4563 (3)−0.1211 (5)0.3584 (5)0.0314 (13)
H50.4500−0.21420.35640.038*
N10.3903 (3)−0.0438 (5)0.3330 (4)0.0309 (11)
C70.7582 (3)−0.2447 (5)0.4457 (4)0.0201 (11)
O40.7261 (2)−0.3320 (3)0.3724 (3)0.0252 (8)
O10.6308 (2)0.2507 (4)0.3926 (3)0.0334 (9)
O1W0.75857 (19)0.1250 (3)0.6941 (3)0.0228 (8)
H1W0.71460.08770.68850.034*
H2W0.77940.15460.75980.034*
O2W0.8300 (2)0.1188 (4)0.4029 (3)0.0312 (9)
H3W0.85540.07940.36910.047*
H4W0.80510.18340.36310.047*
U11U22U33U12U13U23
Tb10.01241 (14)0.01564 (15)0.01830 (15)−0.00225 (9)0.00558 (10)−0.00106 (9)
O50.0153 (18)0.048 (2)0.023 (2)0.0038 (17)0.0067 (16)−0.0063 (18)
O20.0144 (18)0.052 (3)0.028 (2)0.0001 (18)0.0045 (16)0.001 (2)
O30.0271 (19)0.0201 (18)0.0287 (19)−0.0097 (16)0.0153 (16)−0.0047 (16)
C80.017 (3)0.018 (2)0.019 (3)0.003 (2)0.003 (2)0.000 (2)
O60.0132 (18)0.040 (2)0.027 (2)0.0019 (16)0.0068 (16)−0.0024 (17)
C10.019 (3)0.031 (3)0.016 (2)−0.006 (2)0.009 (2)−0.007 (2)
C20.017 (2)0.021 (3)0.014 (2)−0.005 (2)0.0058 (19)0.001 (2)
C30.023 (3)0.028 (3)0.033 (3)0.004 (2)0.017 (2)0.008 (2)
C60.019 (3)0.022 (3)0.031 (3)−0.003 (2)0.010 (2)0.001 (2)
C40.019 (3)0.049 (4)0.030 (3)0.007 (3)0.014 (2)0.008 (3)
C50.036 (3)0.022 (3)0.040 (3)−0.013 (3)0.018 (3)−0.004 (3)
N10.023 (2)0.044 (3)0.026 (2)−0.009 (2)0.010 (2)−0.001 (2)
C70.019 (2)0.017 (3)0.023 (3)0.004 (2)0.006 (2)0.002 (2)
O40.033 (2)0.0225 (18)0.0218 (18)−0.0081 (16)0.0128 (16)−0.0050 (16)
O10.038 (2)0.027 (2)0.041 (2)−0.0189 (18)0.0211 (19)−0.0120 (19)
O1W0.0180 (17)0.027 (2)0.0260 (18)−0.0064 (15)0.0116 (15)−0.0071 (16)
O2W0.049 (2)0.024 (2)0.029 (2)0.0045 (18)0.0241 (18)0.0045 (17)
Tb1—O1i2.280 (3)C2—C31.389 (7)
Tb1—O22.303 (3)C3—C41.379 (7)
Tb1—O52.383 (3)C3—H30.9300
Tb1—O4ii2.385 (3)C6—C51.380 (7)
Tb1—O2W2.427 (3)C6—H60.9300
Tb1—O32.435 (3)C4—N11.330 (8)
Tb1—O6iii2.443 (4)C4—H40.9300
Tb1—O1W2.443 (3)C5—N11.335 (7)
O5—C81.254 (6)C5—H50.9300
O2—C11.244 (6)C7—O41.251 (6)
O3—C71.259 (6)C7—C7ii1.545 (10)
C8—O61.256 (6)O4—Tb1ii2.385 (3)
C8—C8iii1.529 (10)O1—Tb1i2.280 (3)
O6—Tb1iii2.443 (4)O1W—H1W0.8429
C1—O11.261 (6)O1W—H2W0.8420
C1—C21.511 (6)O2W—H3W0.8367
C2—C61.383 (7)O2W—H4W0.8365
O1i—Tb1—O2103.43 (14)O6—C8—C8iii116.0 (5)
O1i—Tb1—O584.39 (13)C8—O6—Tb1iii118.3 (3)
O2—Tb1—O5154.22 (14)O2—C1—O1125.4 (5)
O1i—Tb1—O4ii151.43 (12)O2—C1—C2117.9 (5)
O2—Tb1—O4ii80.50 (13)O1—C1—C2116.7 (5)
O5—Tb1—O4ii104.46 (13)C6—C2—C3118.0 (4)
O1i—Tb1—O2W72.60 (12)C6—C2—C1120.7 (4)
O2—Tb1—O2W79.21 (13)C3—C2—C1121.3 (5)
O5—Tb1—O2W79.88 (13)C4—C3—C2118.6 (5)
O4ii—Tb1—O2W135.25 (12)C4—C3—H3120.7
O1i—Tb1—O3141.11 (12)C2—C3—H3120.7
O2—Tb1—O378.56 (13)C5—C6—C2119.4 (5)
O5—Tb1—O380.16 (12)C5—C6—H6120.3
O4ii—Tb1—O367.43 (11)C2—C6—H6120.3
O2W—Tb1—O369.67 (11)N1—C4—C3123.8 (5)
O1i—Tb1—O6iii85.24 (13)N1—C4—H4118.1
O2—Tb1—O6iii137.67 (13)C3—C4—H4118.1
O5—Tb1—O6iii66.65 (12)N1—C5—C6122.9 (5)
O4ii—Tb1—O6iii74.06 (12)N1—C5—H5118.6
O2W—Tb1—O6iii141.48 (12)C6—C5—H5118.6
O3—Tb1—O6iii119.77 (12)C4—N1—C5117.4 (4)
O1i—Tb1—O1W75.34 (12)O4—C7—O3126.5 (5)
O2—Tb1—O1W72.48 (13)O4—C7—C7ii117.1 (5)
O5—Tb1—O1W133.16 (12)O3—C7—C7ii116.4 (5)
O4ii—Tb1—O1W79.12 (11)C7—O4—Tb1ii118.1 (3)
O2W—Tb1—O1W130.27 (12)C1—O1—Tb1i154.0 (4)
O3—Tb1—O1W138.71 (11)Tb1—O1W—H1W115.5
O6iii—Tb1—O1W69.91 (12)Tb1—O1W—H2W129.8
C8—O5—Tb1119.1 (3)H1W—O1W—H2W106.0
C1—O2—Tb1149.9 (4)Tb1—O2W—H3W122.5
C7—O3—Tb1116.5 (3)Tb1—O2W—H4W129.8
O5—C8—O6127.0 (5)H3W—O2W—H4W107.4
O5—C8—C8iii117.0 (5)
D—H···AD—HH···AD···AD—H···A
O1W—H2W···O3iv0.842.222.992 (5)153
O2W—H4W···O1Wi0.842.193.003 (5)163
O1W—H1W···N1v0.841.832.661 (5)167
O2W—H3W···O6vi0.842.012.836 (5)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯O3i0.842.222.992 (5)153
O2W—H4W⋯O1Wii0.842.193.003 (5)163
O1W—H1W⋯N1iii0.841.832.661 (5)167
O2W—H3W⋯O6iv0.842.012.836 (5)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Modular chemistry: secondary building units as a basis for the design of highly porous and robust metal-organic carboxylate frameworks.

Authors:  M Eddaoudi; D B Moler; H Li; B Chen; T M Reineke; M O'Keeffe; O M Yaghi
Journal:  Acc Chem Res       Date:  2001-04       Impact factor: 22.384

3.  Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Authors:  Wen-Dong Song; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20
  3 in total
  1 in total

1.  Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Authors:  Wen-Dong Song; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20
  1 in total

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