Literature DB >> 21581481

Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Wen-Dong Song1, Shi-Jie Li, Pei-Wen Qin, Shi-Wei Hu.   

Abstract

In the crystal structure of the title complex, [Tb(C(6)H(4)NO(2))(C(2)O(4))(H(2)O)(2)](n), the Tb(III) cation is coordinated by four O atoms from two oxalate ligands, two O atoms from two isonicotinate ligands and two O atoms from water mol-ecules within a distorted square-anti-prismatic coordination. The Tb(III) cation, the isonicotinate anion and the two crystallographically independent water mol-ecules occupy general positions, whereas one of the two crystallographically independent oxalate anions is located on a center of inversion, and the second oxalate anion is located on a twofold rotation axis. The Tb(III) cations are linked by the oxalate and isonicotinate anions into layers, which are connected via inter-molecular hydrogen-bonding and π-π stacking [with centroid-to-centroid distances of 3.509 (2) and 3.343 (3) Å] inter-actions into a three-dimensional network.

Entities:  

Year:  2008        PMID: 21581481      PMCID: PMC2968018          DOI: 10.1107/S1600536808040518

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on coordination polymers and open-framework materials, see: Yaghi et al. (1998 ▶, 2003 ▶); Serre et al. (2004 ▶); James (2003 ▶). For related structures, see: Xia et al. (2004 ▶); Feng et al. (2003 ▶). An independent determination of this structure is reported in the following paper, see: Fang et al. (2009 ▶).

Experimental

Crystal data

[Tb(C6H4NO2)(C2O4)(H2O)2] M = 405.07 Monoclinic, a = 17.7957 (6) Å b = 9.9229 (4) Å c = 12.9673 (5) Å β = 112.407 (2)° V = 2116.95 (14) Å3 Z = 8 Mo Kα radiation μ = 6.72 mm−1 T = 273 (2) K 0.36 × 0.30 × 0.24 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.113, T max = 0.207 7256 measured reflections 1906 independent reflections 1618 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.053 S = 0.91 1906 reflections 145 parameters 6 restraints H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.88 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808040518/nc2122sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040518/nc2122Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Tb(C6H4NO2)(C2O4)(H2O)2]F(000) = 1536
Mr = 405.07Dx = 2.542 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8000 reflections
a = 17.7957 (6) Åθ = 1.7–26.0°
b = 9.9229 (4) ŵ = 6.72 mm1
c = 12.9673 (5) ÅT = 273 K
β = 112.407 (2)°Block, colorless
V = 2116.95 (14) Å30.36 × 0.30 × 0.24 mm
Z = 8
Bruker APEXII area-detector diffractometer1906 independent reflections
Radiation source: fine-focus sealed tube1618 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.2°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −21→20
Tmin = 0.113, Tmax = 0.207k = −11→11
7256 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.053H-atom parameters constrained
S = 0.91w = 1/[σ2(Fo2) + (0.0299P)2 + 5.163P] where P = (Fo2 + 2Fc2)/3
1906 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.52 e Å3
6 restraintsΔρmin = −0.88 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Tb10.323989 (12)0.96756 (2)0.074846 (17)0.01399 (9)
O10.46185 (19)1.0185 (4)0.1051 (3)0.0274 (9)
O20.3030 (2)1.1497 (3)−0.0596 (3)0.0229 (8)
O50.3693 (2)0.7501 (4)0.1067 (3)0.0331 (9)
C10.2585 (3)1.2447 (5)−0.0542 (4)0.0172 (11)
C20.5146 (3)1.0111 (5)0.2013 (4)0.0172 (11)
C70.5237 (3)0.6498 (6)0.1361 (4)0.0231 (12)
H70.51900.74320.13480.028*
C80.3727 (3)0.6297 (6)0.0808 (4)0.0196 (11)
C30.4558 (3)0.5688 (5)0.1108 (3)0.0163 (11)
C60.5989 (3)0.5889 (7)0.1636 (4)0.0281 (13)
H60.64440.64390.18070.034*
C40.4671 (3)0.4306 (5)0.1135 (4)0.0220 (12)
H40.42280.37310.09610.026*
C50.54429 (8)0.37835 (15)0.14206 (11)0.0281 (13)
H50.55080.28530.14400.034*
N10.60972 (8)0.45622 (15)0.16691 (11)0.0279 (11)
O30.59033 (8)1.00505 (15)0.22872 (11)0.0229 (8)
O40.22609 (8)1.33232 (15)−0.12763 (11)0.0232 (8)
O60.31250 (8)0.55572 (15)0.03267 (11)0.0301 (9)
O1W0.25866 (8)0.87408 (15)0.19413 (11)0.0208 (8)
H1W0.21220.90300.18520.031*
H2W0.28330.86220.26300.031*
O2W0.33025 (8)0.88114 (15)−0.09693 (11)0.0286 (9)
H3W0.35500.9157−0.13410.043*
H4W0.29660.8264−0.13940.043*
U11U22U33U12U13U23
Tb10.01048 (13)0.01587 (15)0.01480 (12)0.00208 (11)0.00389 (9)0.00099 (11)
O10.0140 (17)0.047 (3)0.0180 (17)−0.0045 (17)0.0027 (14)0.0043 (17)
O20.0294 (19)0.023 (2)0.0202 (17)0.0082 (17)0.0143 (15)0.0022 (16)
O50.039 (2)0.028 (2)0.039 (2)0.017 (2)0.0227 (19)0.0083 (19)
C10.013 (2)0.019 (3)0.021 (3)0.001 (2)0.007 (2)0.001 (2)
C20.009 (2)0.017 (3)0.021 (2)−0.002 (2)0.002 (2)0.000 (2)
C70.019 (3)0.026 (3)0.022 (3)−0.004 (2)0.005 (2)−0.009 (2)
C80.020 (3)0.030 (3)0.012 (2)0.008 (2)0.008 (2)0.010 (2)
C30.017 (2)0.024 (3)0.007 (2)0.005 (2)0.0035 (18)−0.002 (2)
C60.016 (3)0.047 (4)0.022 (3)−0.004 (3)0.008 (2)−0.006 (3)
C40.020 (3)0.022 (3)0.023 (3)−0.002 (2)0.007 (2)−0.004 (2)
C50.028 (3)0.026 (3)0.034 (3)0.013 (3)0.016 (2)0.007 (3)
N10.015 (2)0.046 (4)0.024 (2)0.007 (2)0.0081 (18)0.003 (2)
O30.0175 (18)0.033 (2)0.0197 (17)−0.0024 (16)0.0089 (14)0.0018 (15)
O40.032 (2)0.020 (2)0.0195 (17)0.0121 (17)0.0116 (15)0.0052 (16)
O60.0095 (17)0.050 (3)0.0259 (18)0.0005 (18)0.0013 (14)0.0006 (18)
O1W0.0149 (16)0.028 (2)0.0201 (16)0.0064 (16)0.0076 (14)0.0074 (16)
O2W0.040 (2)0.028 (2)0.0232 (18)−0.0068 (19)0.0179 (17)−0.0074 (17)
Tb1—O52.285 (4)C7—H70.9300
Tb1—O6i2.3055 (14)C8—O61.251 (5)
Tb1—O4ii2.3814 (14)C8—C31.505 (6)
Tb1—O12.386 (3)C3—C41.385 (7)
Tb1—O2W2.4286 (13)C6—N11.329 (7)
Tb1—O22.439 (3)C6—H60.9300
Tb1—O1W2.4444 (13)C4—C51.380 (5)
Tb1—O3iii2.4476 (13)C4—H40.9300
O1—C21.245 (6)C5—N11.3306
O2—C11.251 (5)C5—H50.9300
O5—C81.249 (6)O3—Tb1iii2.4476 (13)
C1—O41.255 (5)O4—Tb1ii2.3814 (14)
C1—C1ii1.549 (9)O6—Tb1i2.3055 (14)
C2—O31.257 (5)O1W—H1W0.8400
C2—C2iii1.537 (9)O1W—H2W0.8400
C7—C31.382 (7)O2W—H3W0.8400
C7—C61.387 (7)O2W—H4W0.8400
O5—Tb1—O6i103.43 (11)O4—C1—C1ii116.8 (5)
O5—Tb1—O4ii151.65 (9)O1—C2—O3127.1 (4)
O6i—Tb1—O4ii80.4O1—C2—C2iii117.5 (5)
O5—Tb1—O184.30 (13)O3—C2—C2iii115.4 (5)
O6i—Tb1—O1154.26 (9)C3—C7—C6118.6 (5)
O4ii—Tb1—O1104.49 (10)C3—C7—H7120.7
O5—Tb1—O2W72.32 (10)C6—C7—H7120.7
O6i—Tb1—O2W79.4O5—C8—O6125.1 (4)
O4ii—Tb1—O2W135.3O5—C8—C3117.3 (5)
O1—Tb1—O2W79.74 (9)O6—C8—C3117.6 (4)
O5—Tb1—O2140.94 (11)C7—C3—C4117.7 (4)
O6i—Tb1—O278.63 (9)C7—C3—C8120.8 (5)
O4ii—Tb1—O267.37 (8)C4—C3—C8121.5 (4)
O1—Tb1—O280.13 (11)N1—C6—C7123.6 (5)
O2W—Tb1—O269.77 (8)N1—C6—H6118.2
O5—Tb1—O1W75.35 (9)C7—C6—H6118.2
O6i—Tb1—O1W72.49 (5)C5—C4—C3120.0 (4)
O4ii—Tb1—O1W79.29 (5)C5—C4—H4120.0
O1—Tb1—O1W133.11 (8)C3—C4—H4120.0
O2W—Tb1—O1W130.20 (6)N1—C5—C4122.4 (2)
O2—Tb1—O1W138.86 (8)N1—C5—H5118.8
O5—Tb1—O3iii85.32 (10)C4—C5—H5118.8
O6i—Tb1—O3iii137.68 (6)C6—N1—C5117.7 (2)
O4ii—Tb1—O3iii74.2C2—O3—Tb1iii118.5 (2)
O1—Tb1—O3iii66.61 (8)C1—O4—Tb1ii118.2 (2)
O2W—Tb1—O3iii141.3C8—O6—Tb1i149.8 (3)
O2—Tb1—O3iii119.75 (9)Tb1—O1W—H1W117.6
O1W—Tb1—O3iii69.9Tb1—O1W—H2W123.0
C2—O1—Tb1119.2 (3)H1W—O1W—H2W106.4
C1—O2—Tb1116.5 (3)Tb1—O2W—H3W126.8
C8—O5—Tb1154.8 (3)Tb1—O2W—H4W124.0
O2—C1—O4126.6 (4)H3W—O2W—H4W106.6
O2—C1—C1ii116.6 (5)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···N1iv0.841.832.665177
O1W—H2W···O2v0.842.192.992 (3)159
O2W—H3W···O3vi0.842.002.835 (3)177
O2W—H4W···O1Wi0.842.212.998 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯N1i0.841.832.665177
O1W—H2W⋯O2ii0.842.192.992 (3)159
O2W—H3W⋯O3iii0.842.002.835 (3)177
O2W—H4W⋯O1Wiv0.842.212.998 (3)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Reticular synthesis and the design of new materials.

Authors:  Omar M Yaghi; Michael O'Keeffe; Nathan W Ockwig; Hee K Chae; Mohamed Eddaoudi; Jaheon Kim
Journal:  Nature       Date:  2003-06-12       Impact factor: 49.962

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Metal-organic frameworks.

Authors:  Stuart L James
Journal:  Chem Soc Rev       Date:  2003-09       Impact factor: 54.564

4.  Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Authors:  Zhan-Qiang Fang; Rong-Hua Zeng; Yan-Ting Li; Shuo Yang; Zhao-Feng Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20
  4 in total
  1 in total

1.  Poly[diaqua-μ(2)-isonicotinato-μ(2)-oxalato-terbium(III)].

Authors:  Zhan-Qiang Fang; Rong-Hua Zeng; Yan-Ting Li; Shuo Yang; Zhao-Feng Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20
  1 in total

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