| Literature DB >> 21581478 |
Yaru Liu, Jianzhong Ning, Junshan Sun, Chuan Zhang.
Abstract
In the title complex, [Cu(C(2)HCl(2)O(2))(2)(C(12)H(8)N(2))(H(2)O)], the Cu(II) ion has a distorted square-pyramidal coordination geometry. The equatorial positions are occupied by two N atoms from a 1,10-phenanthroline ligand [Cu-N = 1.994 (3) and 2.027 (3) Å] and two O atoms from dichloro-acetate ligands and a water mol-ecule [Cu-O = 1.971 (2) and 1.939 (2) Å]. One O atom from another dichloro-acetate ligand occupies the apical positon [Cu-O = 2.152 (3) Å]. Inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into centrosymmetric dimers. The crystal packing also exhibits weak inter-molecular C-H⋯O hydrogen bonds, π-π inter-actions [centroid-centroid distance = 3.734 (2) Å] and short inter-molecular Cl⋯Cl contacts [3.306 (2) and 3.278 (2) Å].Entities:
Year: 2008 PMID: 21581478 PMCID: PMC2968015 DOI: 10.1107/S1600536808042578
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C2HCl2O2)2(C12H8N2)(H2O)] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 1923 reflections | |
| θ = 2.3–27.1° | |
| α = 67.439 (1)° | µ = 1.74 mm−1 |
| β = 77.585 (2)° | |
| γ = 73.776 (2)° | Block, colorless |
| 0.32 × 0.25 × 0.21 mm |
| Bruker SMART CCD area-detector diffractometer | 3346 independent reflections |
| Radiation source: fine-focus sealed tube | 2539 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.1°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 5043 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3346 reflections | (Δ/σ)max < 0.001 |
| 261 parameters | Δρmax = 0.63 e Å−3 |
| 3 restraints | Δρmin = −0.51 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.23680 (6) | 0.74569 (4) | 0.41387 (4) | 0.03375 (16) | |
| Cl4 | 0.12884 (15) | 0.83880 (10) | 0.01776 (9) | 0.0498 (3) | |
| Cl3 | 0.18005 (19) | 0.55281 (11) | 0.05837 (10) | 0.0653 (4) | |
| Cl1 | 0.66991 (17) | 0.90846 (12) | 0.08639 (11) | 0.0717 (4) | |
| Cl2 | 0.5908 (2) | 0.69108 (14) | 0.04161 (11) | 0.0831 (5) | |
| O3 | 0.1567 (3) | 0.7463 (2) | 0.2733 (2) | 0.0399 (6) | |
| C5 | 0.2814 (4) | 0.9060 (3) | 0.5379 (3) | 0.0310 (8) | |
| O5 | 0.1749 (4) | 0.5698 (3) | 0.5130 (2) | 0.0471 (7) | |
| N2 | 0.1747 (4) | 0.9522 (3) | 0.3541 (2) | 0.0324 (7) | |
| N1 | 0.3082 (4) | 0.7741 (3) | 0.5489 (3) | 0.0343 (7) | |
| C9 | 0.0716 (5) | 1.1808 (4) | 0.2276 (3) | 0.0447 (10) | |
| H9 | 0.0263 | 1.2392 | 0.1564 | 0.054* | |
| O2 | 0.7530 (4) | 0.6097 (3) | 0.2708 (2) | 0.0586 (8) | |
| C13 | 0.6067 (5) | 0.6806 (4) | 0.2683 (3) | 0.0344 (8) | |
| C16 | 0.0957 (5) | 0.6794 (3) | 0.1249 (3) | 0.0340 (8) | |
| H16 | −0.0272 | 0.6861 | 0.1432 | 0.041* | |
| C11 | 0.2127 (6) | 1.1856 (4) | 0.4993 (4) | 0.0471 (10) | |
| H11 | 0.1873 | 1.2779 | 0.4887 | 0.056* | |
| C15 | 0.1639 (5) | 0.6447 (3) | 0.2447 (3) | 0.0341 (8) | |
| O4 | 0.2088 (4) | 0.5243 (3) | 0.3049 (2) | 0.0609 (9) | |
| C14 | 0.5542 (5) | 0.7783 (4) | 0.1437 (3) | 0.0357 (9) | |
| H14 | 0.4330 | 0.8198 | 0.1536 | 0.043* | |
| C1 | 0.3872 (5) | 0.6806 (4) | 0.6436 (3) | 0.0447 (10) | |
| H1 | 0.4132 | 0.5893 | 0.6509 | 0.054* | |
| C12 | 0.2859 (6) | 1.0935 (4) | 0.5985 (4) | 0.0510 (11) | |
| H12 | 0.3130 | 1.1242 | 0.6531 | 0.061* | |
| C8 | 0.1025 (5) | 1.2327 (4) | 0.3051 (3) | 0.0421 (10) | |
| H8 | 0.0766 | 1.3264 | 0.2879 | 0.051* | |
| C10 | 0.1075 (5) | 1.0398 (4) | 0.2542 (3) | 0.0398 (9) | |
| H10 | 0.0836 | 1.0063 | 0.2004 | 0.048* | |
| C6 | 0.2062 (5) | 1.0040 (3) | 0.4314 (3) | 0.0306 (8) | |
| C7 | 0.1742 (5) | 1.1436 (4) | 0.4118 (3) | 0.0368 (9) | |
| C4 | 0.3223 (5) | 0.9501 (4) | 0.6208 (3) | 0.0390 (9) | |
| C2 | 0.4306 (6) | 0.7160 (4) | 0.7297 (4) | 0.0506 (11) | |
| H2 | 0.4810 | 0.6482 | 0.7955 | 0.061* | |
| O1 | 0.5012 (4) | 0.6801 (3) | 0.3559 (2) | 0.0634 (9) | |
| C3 | 0.4009 (6) | 0.8478 (4) | 0.7199 (3) | 0.0477 (10) | |
| H3 | 0.4321 | 0.8710 | 0.7779 | 0.057* | |
| H5A | 0.192 (6) | 0.535 (3) | 0.458 (2) | 0.065 (16)* | |
| H5B | 0.194 (6) | 0.509 (3) | 0.5816 (15) | 0.068 (15)* |
| Cu1 | 0.0471 (3) | 0.0207 (2) | 0.0318 (3) | −0.00140 (19) | −0.0107 (2) | −0.00826 (19) |
| Cl4 | 0.0728 (8) | 0.0307 (5) | 0.0416 (6) | −0.0135 (5) | −0.0179 (5) | −0.0005 (4) |
| Cl3 | 0.1158 (11) | 0.0350 (6) | 0.0486 (6) | −0.0027 (6) | −0.0209 (6) | −0.0222 (5) |
| Cl1 | 0.0801 (9) | 0.0472 (7) | 0.0746 (8) | −0.0293 (6) | −0.0338 (7) | 0.0168 (6) |
| Cl2 | 0.1151 (12) | 0.0745 (9) | 0.0677 (8) | 0.0119 (8) | −0.0340 (8) | −0.0440 (7) |
| O3 | 0.0622 (18) | 0.0227 (13) | 0.0366 (14) | −0.0029 (12) | −0.0151 (13) | −0.0119 (11) |
| C5 | 0.034 (2) | 0.0258 (19) | 0.0303 (18) | −0.0034 (15) | −0.0046 (16) | −0.0087 (15) |
| O5 | 0.073 (2) | 0.0312 (15) | 0.0346 (16) | −0.0132 (15) | −0.0142 (15) | −0.0038 (14) |
| N2 | 0.0419 (19) | 0.0222 (16) | 0.0315 (16) | −0.0044 (13) | −0.0051 (14) | −0.0090 (13) |
| N1 | 0.0420 (18) | 0.0271 (17) | 0.0326 (16) | −0.0042 (14) | −0.0059 (14) | −0.0104 (13) |
| C9 | 0.058 (3) | 0.026 (2) | 0.039 (2) | −0.0008 (18) | −0.014 (2) | −0.0011 (17) |
| O2 | 0.0396 (17) | 0.0558 (19) | 0.0453 (16) | 0.0073 (15) | −0.0018 (14) | 0.0063 (14) |
| C13 | 0.037 (2) | 0.029 (2) | 0.037 (2) | −0.0090 (17) | −0.0027 (18) | −0.0108 (17) |
| C16 | 0.041 (2) | 0.0239 (19) | 0.0350 (19) | −0.0038 (16) | −0.0062 (17) | −0.0094 (16) |
| C11 | 0.066 (3) | 0.029 (2) | 0.052 (2) | −0.010 (2) | −0.010 (2) | −0.018 (2) |
| C15 | 0.041 (2) | 0.024 (2) | 0.034 (2) | −0.0025 (16) | −0.0069 (17) | −0.0084 (16) |
| O4 | 0.113 (3) | 0.0235 (15) | 0.0449 (16) | 0.0005 (16) | −0.0331 (17) | −0.0086 (13) |
| C14 | 0.032 (2) | 0.030 (2) | 0.039 (2) | −0.0029 (16) | −0.0048 (17) | −0.0088 (16) |
| C1 | 0.060 (3) | 0.024 (2) | 0.044 (2) | −0.0006 (19) | −0.018 (2) | −0.0048 (17) |
| C12 | 0.072 (3) | 0.043 (3) | 0.051 (3) | −0.018 (2) | −0.008 (2) | −0.026 (2) |
| C8 | 0.051 (3) | 0.0200 (19) | 0.047 (2) | −0.0035 (17) | −0.007 (2) | −0.0049 (17) |
| C10 | 0.051 (2) | 0.030 (2) | 0.035 (2) | −0.0034 (18) | −0.0145 (18) | −0.0065 (17) |
| C6 | 0.034 (2) | 0.0242 (19) | 0.0298 (18) | −0.0039 (15) | 0.0009 (15) | −0.0097 (15) |
| C7 | 0.040 (2) | 0.0229 (19) | 0.042 (2) | −0.0055 (16) | −0.0010 (18) | −0.0088 (17) |
| C4 | 0.044 (2) | 0.039 (2) | 0.036 (2) | −0.0094 (18) | −0.0024 (18) | −0.0149 (18) |
| C2 | 0.063 (3) | 0.043 (3) | 0.040 (2) | −0.005 (2) | −0.020 (2) | −0.006 (2) |
| O1 | 0.0491 (19) | 0.083 (2) | 0.0386 (16) | 0.0057 (16) | −0.0020 (15) | −0.0158 (16) |
| C3 | 0.057 (3) | 0.052 (3) | 0.038 (2) | −0.010 (2) | −0.014 (2) | −0.016 (2) |
| Cu1—O3 | 1.939 (2) | C13—O1 | 1.213 (4) |
| Cu1—O5 | 1.971 (2) | C13—C14 | 1.536 (5) |
| Cu1—N1 | 1.994 (3) | C16—C15 | 1.531 (5) |
| Cu1—N2 | 2.027 (3) | C16—H16 | 0.9800 |
| Cu1—O1 | 2.152 (3) | C11—C12 | 1.359 (6) |
| Cl4—C16 | 1.774 (3) | C11—C7 | 1.417 (5) |
| Cl3—C16 | 1.759 (4) | C11—H11 | 0.9300 |
| Cl1—C14 | 1.767 (4) | C15—O4 | 1.223 (4) |
| Cl2—C14 | 1.753 (4) | C14—H14 | 0.9800 |
| O3—C15 | 1.261 (4) | C1—C2 | 1.374 (5) |
| C5—N1 | 1.348 (4) | C1—H1 | 0.9300 |
| C5—C4 | 1.394 (5) | C12—C4 | 1.432 (5) |
| C5—C6 | 1.444 (5) | C12—H12 | 0.9300 |
| O5—H5A | 0.85 (3) | C8—C7 | 1.410 (5) |
| O5—H5B | 0.85 (3) | C8—H8 | 0.9300 |
| N2—C10 | 1.331 (4) | C10—H10 | 0.9300 |
| N2—C6 | 1.355 (4) | C6—C7 | 1.401 (5) |
| N1—C1 | 1.348 (4) | C4—C3 | 1.411 (5) |
| C9—C8 | 1.355 (5) | C2—C3 | 1.349 (5) |
| C9—C10 | 1.399 (5) | C2—H2 | 0.9300 |
| C9—H9 | 0.9300 | C3—H3 | 0.9300 |
| O2—C13 | 1.240 (5) | ||
| Cl1···Cl4i | 3.306 (2) | Cg1···Cg2iii | 3.734 (2) |
| Cl2···Cl3ii | 3.278 (2) | ||
| O3—Cu1—O5 | 91.06 (10) | O4—C15—O3 | 127.3 (3) |
| O3—Cu1—N1 | 171.76 (11) | O4—C15—C16 | 117.8 (3) |
| O5—Cu1—N1 | 95.86 (11) | O3—C15—C16 | 114.7 (3) |
| O3—Cu1—N2 | 90.28 (11) | C13—C14—Cl2 | 110.9 (3) |
| O5—Cu1—N2 | 149.53 (12) | C13—C14—Cl1 | 109.3 (2) |
| N1—Cu1—N2 | 81.49 (11) | Cl2—C14—Cl1 | 110.0 (2) |
| O3—Cu1—O1 | 95.15 (11) | C13—C14—H14 | 108.9 |
| O5—Cu1—O1 | 101.24 (12) | Cl2—C14—H14 | 108.9 |
| N1—Cu1—O1 | 87.88 (12) | Cl1—C14—H14 | 108.9 |
| N2—Cu1—O1 | 108.94 (12) | N1—C1—C2 | 122.1 (4) |
| C15—O3—Cu1 | 127.3 (2) | N1—C1—H1 | 118.9 |
| N1—C5—C4 | 124.2 (3) | C2—C1—H1 | 119.0 |
| N1—C5—C6 | 115.7 (3) | C11—C12—C4 | 121.4 (4) |
| C4—C5—C6 | 120.1 (3) | C11—C12—H12 | 119.3 |
| Cu1—O5—H5A | 99 (2) | C4—C12—H12 | 119.3 |
| Cu1—O5—H5B | 137 (3) | C9—C8—C7 | 119.6 (3) |
| H5A—O5—H5B | 111 (3) | C9—C8—H8 | 120.2 |
| C10—N2—C6 | 117.7 (3) | C7—C8—H8 | 120.2 |
| C10—N2—Cu1 | 129.8 (3) | N2—C10—C9 | 121.9 (4) |
| C6—N2—Cu1 | 112.5 (2) | N2—C10—H10 | 119.0 |
| C1—N1—C5 | 117.1 (3) | C9—C10—H10 | 119.1 |
| C1—N1—Cu1 | 128.6 (3) | N2—C6—C7 | 124.1 (3) |
| C5—N1—Cu1 | 114.1 (2) | N2—C6—C5 | 116.1 (3) |
| C8—C9—C10 | 120.4 (4) | C7—C6—C5 | 119.8 (3) |
| C8—C9—H9 | 119.8 | C6—C7—C8 | 116.3 (3) |
| C10—C9—H9 | 119.8 | C6—C7—C11 | 118.9 (3) |
| O1—C13—O2 | 125.7 (4) | C8—C7—C11 | 124.7 (3) |
| O1—C13—C14 | 117.0 (3) | C5—C4—C3 | 116.3 (3) |
| O2—C13—C14 | 117.3 (3) | C5—C4—C12 | 118.5 (3) |
| C15—C16—Cl3 | 113.0 (3) | C3—C4—C12 | 125.2 (3) |
| C15—C16—Cl4 | 112.4 (2) | C3—C2—C1 | 120.8 (3) |
| Cl3—C16—Cl4 | 109.30 (19) | C3—C2—H2 | 119.6 |
| C15—C16—H16 | 107.3 | C1—C2—H2 | 119.6 |
| Cl3—C16—H16 | 107.3 | C13—O1—Cu1 | 144.6 (3) |
| Cl4—C16—H16 | 107.3 | C2—C3—C4 | 119.4 (3) |
| C12—C11—C7 | 121.2 (4) | C2—C3—H3 | 120.3 |
| C12—C11—H11 | 119.4 | C4—C3—H3 | 120.3 |
| C7—C11—H11 | 119.4 |
| H··· | ||||
| C16—H16···O2iv | 0.98 | 2.24 | 3.118 (5) | 149 |
| O5—H5B···O2v | 0.85 (2) | 1.81 (2) | 2.654 (3) | 174 (3) |
| O5—H5A···O4 | 0.85 (2) | 1.86 (2) | 2.673 (4) | 159 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C16—H16⋯O2i | 0.98 | 2.24 | 3.118 (5) | 149 |
| O5—H5 | 0.85 (2) | 1.81 (2) | 2.654 (3) | 174 (3) |
| O5—H5 | 0.85 (2) | 1.86 (2) | 2.673 (4) | 159 (3) |
Symmetry codes: (i) ; (ii) .