Literature DB >> 21581454

tert-Butyl 2-(3-acetyl-amino-2-oxo-1,2-dihydro-1-pyrid-yl)acetate.

N David Karis, Wendy A Loughlin, Ian D Jenkins, Peter C Healy.   

Abstract

The title compound, C(13)H(18)N(2)O(4), crystallizes as discrete mol-ecules associated as N-H⋯O hydrogen-bonded dimers disposed about a crystallographic inversion centre. The structure is the first solid-state structure for a 3-acetyl-pyridone without C-4 to C-6 substituents. The amide subsituent at C-3 is coplanar with the pyridone ring, while the tert-butyl ester group is orthogonal to the pyridine ring. The amide and ester carbonyl O atoms are not involved in strong hydrogen bonding with only a number of intramolecular and intermolecular C-H⋯O inter-actions apparent in the structure.

Entities:  

Year:  2008        PMID: 21581454      PMCID: PMC2959903          DOI: 10.1107/S1600536808039810

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bernstein et al. (1994 ▶); Dragovich et al. (2002 ▶); Hu et al. (2008 ▶); Karis et al. (2007 ▶); Kim et al. (2008 ▶); Loughlin et al. (2004 ▶); Reiner et al. (1999 ▶); Semple et al. (1998 ▶); Veale et al. (1995 ▶). For the synthesis, see: Sanderson et al. (1997 ▶); Tamura et al. (1996 ▶). For related structures. see: Karis et al. (2006 ▶); Yang & Craven (1998 ▶).

Experimental

Crystal data

C13H18N2O4 M = 266.29 Monoclinic, a = 13.9417 (15) Å b = 5.585 (1) Å c = 17.861 (2) Å β = 97.039 (9)° V = 1380.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 (2) K 0.40 × 0.30 × 0.20 mm

Data collection

Rigaku AFC-7R diffractometer Absorption correction: none 2731 measured reflections 2428 independent reflections 1482 reflections with I > 2σ(I) R int = 0.046 3 standard reflections every 150 reflections intensity decay: 0.6%

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.162 S = 1.02 2428 reflections 176 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: MSC/AFC7 Diffractometer Control Software (Molecular Structure Corporation, 1999 ▶); cell refinement: MSC/AFC7 Diffractometer Control Software; data reduction: TEXSAN for Windows (Molecular Structure Corporation, 2001 ▶); program(s) used to solve structure: TEXSAN for Windows; program(s) used to refine structure: TEXSAN for Windows and SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: TEXSAN for Windows and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808039810/bt2816sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039810/bt2816Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O4F000 = 568
Mr = 266.29Dx = 1.281 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 13.9417 (15) Åθ = 12.6–17.5º
b = 5.585 (1) ŵ = 0.10 mm1
c = 17.861 (2) ÅT = 295 (2) K
β = 97.039 (9)ºBlock, red
V = 1380.3 (3) Å30.40 × 0.30 × 0.20 mm
Z = 4
Rigaku AFC-7R diffractometerRint = 0.046
Radiation source: Rigaku rotating anodeθmax = 25.0º
Monochromator: graphiteθmin = 2.6º
T = 295 Kh = −16→16
ω–2θ scansk = −6→0
Absorption correction: nonel = −21→10
2731 measured reflections3 standard reflections
2428 independent reflections every 150 reflections
1482 reflections with I > 2σ(I) intensity decay: 0.6%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.162  w = 1/[σ2(Fo2) + (0.0906P)2 + 0.0473P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2428 reflectionsΔρmax = 0.27 e Å3
176 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The scan width was (1.79 + 0.30tanθ)° with an ω scan speed of 16° per minute (up to 4 scans to achieve I/σ(I) > 10). Stationary background counts were recorded at each end of the scan, and the scan time:background time ratio was 2:1.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.93631 (11)0.2790 (3)0.03272 (10)0.0595 (6)
O31.26910 (13)0.2449 (4)0.15628 (14)0.0940 (9)
O110.79117 (14)0.2673 (4)0.16249 (13)0.0868 (9)
O120.66171 (11)0.0894 (3)0.09995 (9)0.0520 (6)
N10.91347 (13)−0.0488 (3)0.10449 (11)0.0487 (6)
N31.12376 (12)0.3204 (4)0.08928 (11)0.0497 (7)
C20.97001 (15)0.1321 (4)0.08098 (12)0.0450 (7)
C31.06936 (15)0.1361 (4)0.11623 (12)0.0450 (7)
C41.10110 (17)−0.0279 (5)0.16998 (14)0.0546 (8)
C51.0390 (2)−0.2076 (5)0.19027 (15)0.0634 (10)
C60.94768 (18)−0.2158 (5)0.15792 (15)0.0580 (9)
C110.81146 (16)−0.0501 (4)0.07545 (14)0.0508 (8)
C120.75508 (16)0.1222 (4)0.11859 (14)0.0505 (8)
C130.58947 (17)0.2243 (5)0.13832 (15)0.0569 (9)
C140.4945 (2)0.1252 (7)0.1020 (2)0.0982 (15)
C150.6042 (2)0.1659 (8)0.22108 (18)0.0934 (14)
C160.5968 (3)0.4858 (6)0.1224 (3)0.1150 (18)
C311.21909 (17)0.3673 (5)0.11050 (15)0.0577 (9)
C321.25913 (17)0.5768 (6)0.07310 (16)0.0683 (10)
H31.094000.413600.055800.0590*
H41.16570−0.020400.194100.0650*
H51.06240−0.322800.227000.0750*
H60.90590−0.338200.171800.0690*
H14A0.442700.193300.125700.1480*
H14B0.49430−0.045700.107800.1480*
H14C0.486100.164700.049300.1480*
H15A0.663000.238600.244000.1400*
H15B0.60820−0.004600.227600.1400*
H15C0.550800.226400.244600.1400*
H16A0.656000.547500.148400.1730*
H16B0.543000.568100.139400.1730*
H16C0.596100.509900.069100.1730*
H32A1.319900.533700.056700.1030*
H32B1.268600.707400.108200.1030*
H32C1.214700.624200.030300.1030*
H1110.78650−0.207600.079800.0610*
H1120.80430−0.005300.023700.0610*
U11U22U33U12U13U23
O20.0418 (9)0.0716 (12)0.0638 (10)−0.0042 (9)0.0008 (8)0.0138 (10)
O30.0447 (10)0.1068 (17)0.1239 (19)−0.0035 (11)−0.0167 (11)0.0397 (15)
O110.0571 (12)0.0988 (16)0.1066 (16)−0.0158 (11)0.0190 (11)−0.0554 (14)
O120.0417 (9)0.0507 (10)0.0646 (10)0.0020 (7)0.0110 (7)−0.0070 (9)
N10.0405 (10)0.0493 (11)0.0577 (12)−0.0012 (9)0.0119 (9)−0.0033 (10)
N30.0332 (10)0.0621 (13)0.0531 (11)0.0032 (9)0.0028 (8)0.0019 (10)
C20.0375 (11)0.0517 (14)0.0468 (12)0.0008 (11)0.0096 (10)−0.0036 (12)
C30.0375 (11)0.0528 (14)0.0461 (12)0.0056 (10)0.0111 (10)−0.0059 (11)
C40.0445 (13)0.0635 (16)0.0555 (14)0.0082 (12)0.0052 (11)−0.0015 (13)
C50.0629 (16)0.0598 (17)0.0673 (17)0.0109 (14)0.0076 (13)0.0107 (14)
C60.0583 (15)0.0487 (15)0.0680 (16)0.0000 (12)0.0118 (13)0.0020 (13)
C110.0404 (12)0.0517 (14)0.0614 (14)−0.0088 (11)0.0112 (11)−0.0087 (12)
C120.0421 (13)0.0530 (14)0.0575 (14)−0.0060 (11)0.0100 (11)−0.0062 (12)
C130.0495 (14)0.0502 (15)0.0751 (17)0.0081 (11)0.0243 (12)0.0020 (13)
C140.0472 (16)0.105 (3)0.142 (3)0.0181 (17)0.0101 (18)−0.018 (2)
C150.083 (2)0.122 (3)0.083 (2)0.014 (2)0.0411 (18)0.010 (2)
C160.127 (3)0.0546 (19)0.180 (4)0.024 (2)0.085 (3)0.024 (2)
C310.0377 (13)0.0680 (17)0.0671 (16)0.0021 (12)0.0049 (12)−0.0023 (14)
C320.0407 (13)0.081 (2)0.0817 (19)−0.0074 (13)0.0020 (13)0.0100 (16)
O2—C21.240 (3)C31—C321.489 (4)
O3—C311.218 (3)C4—H40.9500
O11—C121.195 (3)C5—H50.9500
O12—C121.316 (3)C6—H60.9500
O12—C131.490 (3)C11—H1110.9500
N1—C21.378 (3)C11—H1120.9500
N1—C61.377 (3)C14—H14A0.9600
N1—C111.453 (3)C14—H14B0.9600
N3—C31.399 (3)C14—H14C0.9600
N3—C311.362 (3)C15—H15A0.9600
N3—H30.8600C15—H15B0.9600
C2—C31.450 (3)C15—H15C0.9600
C3—C41.361 (3)C16—H16A0.9600
C4—C51.402 (4)C16—H16B0.9600
C5—C61.333 (4)C16—H16C0.9600
C11—C121.512 (3)C32—H32A0.9600
C13—C141.507 (4)C32—H32B0.9600
C13—C161.494 (4)C32—H32C0.9600
C13—C151.503 (4)
O2···N32.694 (2)C31···H42.7800
O2···C123.233 (3)C32···H112i3.0200
O2···C32i3.222 (3)H3···O22.3100
O2···N3i3.164 (3)H3···H32C2.1500
O3···C42.830 (3)H3···O2i2.3400
O11···C23.130 (3)H4···O32.2300
O11···N12.744 (3)H4···C312.7800
O11···C152.980 (4)H4···O11vi2.8200
O11···C162.978 (5)H5···O11vi2.7100
O11···C5ii3.319 (4)H5···C5vi3.0500
O11···C4ii3.379 (3)H5···C6vi3.0200
O2···H32.3100H6···O11vii2.7200
O2···H32Ci2.3300H6···H1112.3100
O2···H1122.4200H6···C4vi3.0300
O2···H3i2.3400H14A···O3viii2.5600
O3···H42.2300H14A···H15C2.4600
O3···H14Aiii2.5600H14A···H16B2.5100
O3···H15Bii2.8800H14B···C16vii2.9800
O11···H16A2.4400H14B···H15B2.5100
O11···H6iv2.7200H14B···H16Bvii2.3100
O11···H15A2.4400H14C···H16C2.4600
O11···H4ii2.8200H15A···O112.4400
O11···H5ii2.7100H15A···C122.7900
N1···O112.744 (3)H15A···H16A2.4200
N3···O22.694 (2)H15B···C123.0800
N3···O2i3.164 (3)H15B···H14B2.5100
N3···H112v2.9400H15B···O3vi2.8800
C2···O113.130 (3)H15C···H14A2.4600
C2···C2v3.441 (3)H16A···O112.4400
C4···O32.830 (3)H16A···C122.8300
C4···O11vi3.379 (3)H16A···H15A2.4200
C5···O11vi3.319 (4)H16B···H14A2.5100
C12···O23.233 (3)H16B···H14Biv2.3100
C15···O112.980 (4)H16C···H14C2.4600
C16···O112.978 (5)H32B···C4iv3.0800
C32···O2i3.222 (3)H32C···H32.1500
C4···H32Bvii3.0800H32C···O2i2.3300
C4···H6ii3.0300H32C···C11i3.0300
C5···H5ii3.0500H32C···C12i3.0900
C6···H5ii3.0200H32C···H112i2.3400
C11···H32Ci3.0300H111···H62.3100
C12···H15A2.7900H112···O22.4200
C12···H32Ci3.0900H112···N3v2.9400
C12···H16A2.8300H112···C32i3.0200
C12···H15B3.0800H112···H32Ci2.3400
C16···H14Biv2.9800
C12—O12—C13121.10 (18)C6—C5—H5120.00
C2—N1—C6123.04 (19)N1—C6—H6120.00
C2—N1—C11117.79 (18)C5—C6—H6120.00
C6—N1—C11119.00 (19)N1—C11—H111109.00
C3—N3—C31126.7 (2)N1—C11—H112109.00
C3—N3—H3117.00C12—C11—H111109.00
C31—N3—H3117.00C12—C11—H112109.00
N1—C2—C3115.51 (19)H111—C11—H112109.00
O2—C2—N1120.98 (19)C13—C14—H14A109.00
O2—C2—C3123.5 (2)C13—C14—H14B109.00
N3—C3—C2113.04 (19)C13—C14—H14C109.00
N3—C3—C4126.5 (2)H14A—C14—H14B110.00
C2—C3—C4120.5 (2)H14A—C14—H14C109.00
C3—C4—C5120.4 (2)H14B—C14—H14C109.00
C4—C5—C6120.0 (3)C13—C15—H15A110.00
N1—C6—C5120.6 (2)C13—C15—H15B109.00
N1—C11—C12111.23 (19)C13—C15—H15C110.00
O11—C12—C11124.2 (2)H15A—C15—H15B109.00
O11—C12—O12125.7 (2)H15A—C15—H15C109.00
O12—C12—C11110.02 (19)H15B—C15—H15C109.00
O12—C13—C15108.9 (2)C13—C16—H16A109.00
O12—C13—C14103.0 (2)C13—C16—H16B109.00
C14—C13—C16110.8 (3)C13—C16—H16C109.00
C15—C13—C16113.3 (3)H16A—C16—H16B109.00
O12—C13—C16109.9 (2)H16A—C16—H16C109.00
C14—C13—C15110.5 (2)H16B—C16—H16C109.00
N3—C31—C32115.7 (2)C31—C32—H32A109.00
O3—C31—N3122.5 (2)C31—C32—H32B109.00
O3—C31—C32121.8 (2)C31—C32—H32C109.00
C3—C4—H4120.00H32A—C32—H32B109.00
C5—C4—H4120.00H32A—C32—H32C109.00
C4—C5—H5120.00H32B—C32—H32C110.00
C13—O12—C12—O11−5.0 (4)C31—N3—C3—C41.5 (4)
C13—O12—C12—C11175.59 (19)C3—N3—C31—O31.4 (4)
C12—O12—C13—C14−177.9 (2)C3—N3—C31—C32−179.6 (2)
C12—O12—C13—C15−60.6 (3)O2—C2—C3—N3−1.0 (3)
C12—O12—C13—C1664.0 (3)O2—C2—C3—C4178.7 (2)
C6—N1—C2—O2−180.0 (2)N1—C2—C3—N3178.89 (19)
C6—N1—C2—C30.2 (3)N1—C2—C3—C4−1.4 (3)
C11—N1—C2—O2−4.9 (3)N3—C3—C4—C5−178.3 (2)
C11—N1—C2—C3175.25 (19)C2—C3—C4—C52.0 (4)
C2—N1—C6—C50.6 (4)C3—C4—C5—C6−1.3 (4)
C11—N1—C6—C5−174.5 (2)C4—C5—C6—N10.0 (4)
C2—N1—C11—C12−81.1 (2)N1—C11—C12—O1111.0 (3)
C6—N1—C11—C1294.2 (2)N1—C11—C12—O12−169.61 (18)
C31—N3—C3—C2−178.8 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3···O2i0.86002.34003.164 (3)161.00
C4—H4···O30.95002.23002.830 (3)120.00
C14—H14A···O3viii0.962.563.465 (4)157
C15—H15A···O110.962.442.980 (4)115
C16—H16A···O110.962.442.978 (5)115
C32—H32C···O2i0.962.333.222 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O2i0.862.343.164 (3)161
C4—H4⋯O30.952.232.830 (3)120
C14—H14A⋯O3ii0.962.563.465 (4)157
C15—H15A⋯O110.962.442.980 (4)115
C16—H16A⋯O110.962.442.978 (5)115
C32—H32C⋯O2i0.962.333.222 (3)155

Symmetry codes: (i) ; (ii) .

  10 in total

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Journal:  Bioorg Med Chem Lett       Date:  1999-03-22       Impact factor: 2.823

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  10 in total

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