Literature DB >> 21581414

A monoclinic polymorph of 4,4'-dichloro-2,2'-(piperazine-1,4-diyl-dimethyl-ene)diphenol.

Koji Kubono1, Yuki Tsuno, Keita Tani, Kunihiko Yokoi.   

Abstract

The titile compound, C(18)H(20)Cl(2)N(2)O(2), crystallizes as a monoclinic form in the space group P2(1)/n, with Z' = 1/2. It is polymorphic with the previously reported orthorhombic form [Kubono, Tsuno, Tani & Yokoi (2008). Acta Cryst. E64, o2309]. In the present polymorph, the mol-ecule lies on a crystallographic inversion centre at the piperazine ring centroid. An intra-molecular O-H⋯N hydrogen bond forms an S(6) ring motif. Inter-molecular C-H⋯O hydrogen bonding generates a C(5) chain motif propagating along the b axis, forming sheets parallel to (02) with a first-level graph set S(6)C(5)R(6) (6)(34).

Entities:  

Year:  2008        PMID: 21581414      PMCID: PMC2959908          DOI: 10.1107/S1600536808038750

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the Pbca polymorph, see: Kubono et al. (2008 ▶). For graph-set notation in hydrogen bonds, see: Bernstein et al. (1995 ▶). For the synthesis of a ligand with two piperazine arms, see: Bharathi et al. (2006 ▶). For the monoclinic and ortho­rhom­bic polymorphs of a tetra­chloro-2,2′-(piperazine-1,4-diyl­dimeth­yl­­ene)diphenol, see: Kubono & Yokoi (2007 ▶). For the structure of 1,4-bis­(2-hydr­oxy-5-methyl­benz­yl)piperazine, see: Kuppayee et al. (1999 ▶).

Experimental

Crystal data

C18H20Cl2N2O2 M = 367.26 Monoclinic, a = 15.755 (4) Å b = 9.2667 (17) Å c = 5.9771 (19) Å β = 96.45 (2)° V = 867.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.39 mm−1 T = 298.1 K 0.35 × 0.15 × 0.15 mm

Data collection

Rigaku AFC-7R diffractometer Absorption correction: none 2462 measured reflections 1994 independent reflections 1316 reflections with F 2 > 2σ(F 2) R int = 0.020 3 standard reflections every 150 reflections intensity decay: 0.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.149 S = 1.01 1994 reflections 119 parameters All H-atom parameters refined Δρmax = 0.54 e Å−3 Δρmin = −0.52 e Å−3 Data collection: WinAFC (Rigaku/MSC, 2006 ▶); cell refinement: WinAFC; data reduction: CrystalStructure (Rigaku/MSC, 2006 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038750/si2131sup1.cif Structure factors: contains datablocks II. DOI: 10.1107/S1600536808038750/si2131IIsup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20Cl2N2O2F000 = 384.00
Mr = 367.26Dx = 1.407 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 15.755 (4) Åθ = 15.2–17.3º
b = 9.2667 (17) ŵ = 0.39 mm1
c = 5.9771 (19) ÅT = 298.1 K
β = 96.45 (2)ºColumn, colorless
V = 867.1 (4) Å30.35 × 0.15 × 0.15 mm
Z = 2
Rigaku AFC-7R diffractometerθmax = 27.5º
ω–2θ scansh = −20→20
Absorption correction: nonek = 0→12
2462 measured reflectionsl = −7→4
1994 independent reflections3 standard reflections
1316 reflections with F2 > 2σ(F2) every 150 reflections
Rint = 0.020 intensity decay: 0.4%
Refinement on F2All H-atom parameters refined
R[F2 > 2σ(F2)] = 0.041  w = 1/[0.002Fo2 + σ(Fo2)]/(4Fo2)
wR(F2) = 0.149(Δ/σ)max < 0.001
S = 1.01Δρmax = 0.54 e Å3
1994 reflectionsΔρmin = −0.52 e Å3
119 parametersExtinction correction: none
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Cl10.70334 (4)0.71539 (6)0.65673 (12)0.0627 (2)
O10.59890 (10)0.28682 (15)1.2938 (2)0.0497 (4)
N10.50843 (9)0.15177 (16)0.9674 (2)0.0354 (3)
C10.62416 (12)0.3779 (2)1.1357 (3)0.0378 (4)
C20.69309 (12)0.4691 (2)1.1990 (3)0.0461 (5)
C30.71835 (13)0.5701 (2)1.0514 (4)0.0473 (5)
C40.67524 (12)0.5798 (2)0.8384 (3)0.0436 (5)
C50.60947 (12)0.4866 (2)0.7692 (3)0.0385 (5)
C60.58325 (11)0.38356 (19)0.9157 (3)0.0337 (4)
C70.50735 (12)0.28755 (19)0.8387 (3)0.0390 (5)
C80.57289 (12)0.0497 (2)0.9043 (4)0.0417 (5)
C90.57559 (11)−0.0814 (2)1.0552 (4)0.0422 (5)
H10.56560.22611.22980.059*
H20.72240.46091.34620.054*
H30.76500.63281.09500.056*
H40.58190.49260.61980.047*
H50.50900.26530.68410.046*
H60.45620.33830.85650.046*
H70.55800.01950.75310.051*
H80.62720.09540.91740.051*
H90.6173−0.14791.01570.051*
H100.5898−0.05101.20650.051*
U11U22U33U12U13U23
Cl10.0679 (4)0.0428 (3)0.0828 (5)−0.0173 (2)0.0324 (3)−0.0034 (2)
O10.0618 (9)0.0389 (8)0.0467 (9)−0.0050 (6)−0.0016 (7)−0.0006 (6)
N10.0266 (6)0.0258 (6)0.0545 (10)−0.0007 (5)0.0077 (6)−0.0043 (6)
C10.0365 (9)0.0272 (8)0.0493 (11)0.0049 (7)0.0029 (8)−0.0052 (8)
C20.0383 (10)0.0387 (10)0.0582 (13)0.0016 (8)−0.0081 (9)−0.0107 (9)
C30.0323 (9)0.0367 (9)0.0727 (15)−0.0036 (8)0.0044 (9)−0.0146 (10)
C40.0363 (9)0.0299 (9)0.0670 (14)−0.0038 (7)0.0158 (9)−0.0074 (8)
C50.0372 (9)0.0304 (9)0.0481 (11)−0.0024 (7)0.0057 (8)−0.0045 (8)
C60.0295 (8)0.0255 (7)0.0463 (10)0.0007 (7)0.0043 (7)−0.0059 (7)
C70.0349 (9)0.0302 (9)0.0510 (12)−0.0037 (7)0.0002 (8)−0.0011 (8)
C80.0314 (8)0.0295 (9)0.0665 (13)−0.0012 (7)0.0153 (8)−0.0067 (8)
C90.0286 (8)0.0293 (8)0.0689 (13)−0.0005 (7)0.0062 (8)−0.0048 (9)
Cl1—C41.750 (2)C8—C91.510 (2)
O1—C11.360 (2)O1—H10.832
N1—C71.474 (2)C2—H20.950
N1—C81.468 (2)C3—H30.950
N1—C9i1.468 (2)C5—H40.950
C1—C21.395 (2)C7—H50.950
C1—C61.399 (2)C7—H60.950
C2—C31.375 (3)C8—H70.950
C3—C41.377 (3)C8—H80.950
C4—C51.376 (2)C9—H90.950
C5—C61.389 (2)C9—H100.950
C6—C71.520 (2)
C7—N1—C8112.58 (15)C3—C2—H2120.2
C7—N1—C9i111.96 (14)C2—C3—H3120.7
C8—N1—C9i109.43 (14)C4—C3—H3120.0
O1—C1—C2117.87 (17)C4—C5—H4119.7
O1—C1—C6122.46 (16)C6—C5—H4119.7
C2—C1—C6119.67 (18)N1—C7—H5108.8
C1—C2—C3120.75 (19)N1—C7—H6108.9
C2—C3—C4119.27 (18)C6—C7—H5108.3
Cl1—C4—C3119.17 (14)C6—C7—H6109.0
Cl1—C4—C5119.92 (16)H5—C7—H6109.5
C3—C4—C5120.90 (19)N1—C8—H7109.3
C4—C5—C6120.60 (18)N1—C8—H8109.5
C1—C6—C5118.68 (16)C9—C8—H7108.6
C1—C6—C7121.77 (17)C9—C8—H8110.1
C5—C6—C7119.41 (16)H7—C8—H8109.5
N1—C7—C6112.28 (15)N1i—C9—H9109.3
N1—C8—C9109.81 (17)N1i—C9—H10109.5
N1i—C9—C8109.75 (15)C8—C9—H9110.4
C1—O1—H1108.6C8—C9—H10108.5
C1—C2—H2119.0H9—C9—H10109.5
C7—N1—C8—C9175.34 (15)C6—C1—C2—C33.6 (3)
C8—N1—C7—C6−74.1 (2)C1—C2—C3—C4−0.6 (3)
C7—N1—C9i—C8i−175.02 (17)C2—C3—C4—Cl1176.21 (16)
C9i—N1—C7—C6162.11 (16)C2—C3—C4—C5−2.3 (3)
C8—N1—C9i—C8i59.4 (2)Cl1—C4—C5—C6−176.38 (15)
C9i—N1—C8—C9−59.5 (2)C3—C4—C5—C62.1 (3)
O1—C1—C2—C3−175.83 (18)C4—C5—C6—C10.9 (2)
O1—C1—C6—C5175.67 (17)C4—C5—C6—C7176.70 (17)
O1—C1—C6—C70.0 (2)C1—C6—C7—N1−27.3 (2)
C2—C1—C6—C5−3.8 (2)C5—C6—C7—N1157.10 (17)
C2—C1—C6—C7−179.42 (17)N1—C8—C9—N1i59.7 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.831.852.604 (2)150
C3—H3···O1ii0.952.603.547 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.831.852.604 (2)150
C3—H3⋯O1i0.952.603.547 (2)175

Symmetry code: (i) .

  2 in total

1.  Monoclinic and orthorhombic polymorphs of 4,4',6,6'-tetrachloro-2,2'-(piperazine-1,4-diyldimethylene)diphenol.

Authors:  Koji Kubono; Kunihiko Yokoi
Journal:  Acta Crystallogr C       Date:  2007-08-17       Impact factor: 1.172

2.  4,4'-Dichloro-2,2'-(piperazine-1,4-diyldimethyl-ene)diphenol.

Authors:  Koji Kubono; Yuki Tsuno; Keita Tani; Kunihiko Yokoi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13
  2 in total

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