| Literature DB >> 21581286 |
Koji Kubono1, Yuki Tsuno, Keita Tani, Kunihiko Yokoi.
Abstract
In the titile compound, C(18)H(20)Cl(2)N(2)O(2), the piperazine ring adopts a chair conformation. The mol-ecule has a non-crystallographic inversion centre in the middle of the piperazine ring at approximate position (3/4, 1/8, 3/8). There are intra-molecular O-H⋯N hydrogen bonds forming S(6) ring motifs. Inter-molecular C-H⋯O hydrogen bonds generate anti-parallel C(5) chain motifs propagating along the b axis, forming sheets parallel to the bc plane with a first-level graph-set S(6)C(5)R(6) (6)(26).Entities:
Year: 2008 PMID: 21581286 PMCID: PMC2959987 DOI: 10.1107/S1600536808035769
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H20Cl2N2O2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 18 reflections |
| θ = 13.7–16.9º | |
| µ = 0.38 mm−1 | |
| Prismatic, colorless | |
| 0.18 × 0.13 × 0.13 mm |
| Rigaku AFC-7R diffractometer | θmax = 27.5º |
| ω scans | |
| Absorption correction: none | |
| 5928 measured reflections | |
| 4066 independent reflections | 3 standard reflections |
| 2735 reflections with | every 150 reflections |
| intensity decay: 0.7% |
| Refinement on | All H-atom parameters refined |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.33 e Å−3 | |
| 2739 reflections | Δρmin = −0.45 e Å−3 |
| 237 parameters | Extinction correction: none |
| Geometry. The molecule adopts a non-crystallographic inversion centre in the middle of the piperazine ring at an approximate position (3/4, 1/8, 3/8). |
| Refinement. Refinement was performed using reflections with |
| Cl1 | 0.43588 (6) | 0.27754 (4) | −0.07209 (8) | 0.0807 (3) | |
| Cl2 | 1.07341 (7) | −0.01127 (5) | 0.83011 (9) | 0.0914 (4) | |
| O1 | 0.75085 (15) | 0.11534 (9) | 0.07111 (17) | 0.0559 (7) | |
| O2 | 0.74244 (15) | 0.13266 (9) | 0.67705 (18) | 0.0643 (8) | |
| N1 | 0.73683 (16) | 0.16416 (11) | 0.2758 (2) | 0.0385 (7) | |
| N2 | 0.77032 (17) | 0.08768 (10) | 0.4717 (2) | 0.0385 (8) | |
| C1 | 0.6764 (2) | 0.15283 (15) | 0.0418 (2) | 0.0435 (10) | |
| C2 | 0.6298 (2) | 0.14079 (15) | −0.0579 (2) | 0.0506 (11) | |
| C3 | 0.5560 (2) | 0.17790 (18) | −0.0936 (2) | 0.0558 (12) | |
| C4 | 0.5283 (2) | 0.22809 (16) | −0.0274 (3) | 0.0526 (12) | |
| C5 | 0.5720 (2) | 0.24037 (15) | 0.0734 (2) | 0.0477 (11) | |
| C6 | 0.6466 (2) | 0.20327 (14) | 0.1097 (2) | 0.0398 (10) | |
| C7 | 0.6988 (2) | 0.21952 (13) | 0.2166 (2) | 0.0459 (10) | |
| C8 | 0.8043 (2) | 0.18345 (14) | 0.3642 (2) | 0.0483 (10) | |
| C9 | 0.8455 (2) | 0.12615 (13) | 0.4217 (2) | 0.0465 (10) | |
| C10 | 0.7022 (2) | 0.06864 (13) | 0.3845 (2) | 0.0451 (10) | |
| C11 | 0.6609 (2) | 0.12632 (13) | 0.3279 (2) | 0.0466 (10) | |
| C12 | 0.8101 (2) | 0.03329 (13) | 0.5321 (2) | 0.0476 (10) | |
| C13 | 0.8583 (2) | 0.05200 (14) | 0.6408 (2) | 0.0381 (10) | |
| C14 | 0.9375 (2) | 0.01930 (13) | 0.6786 (2) | 0.0451 (11) | |
| C15 | 0.9773 (2) | 0.03340 (15) | 0.7820 (3) | 0.0505 (11) | |
| C16 | 0.9415 (2) | 0.08039 (17) | 0.8475 (2) | 0.0544 (12) | |
| C17 | 0.8640 (2) | 0.11345 (15) | 0.8107 (3) | 0.0563 (12) | |
| C18 | 0.8214 (2) | 0.09977 (14) | 0.7088 (2) | 0.0432 (11) | |
| H1 | 0.7660 | 0.1247 | 0.1381 | 0.067* | |
| H2 | 0.6488 | 0.1057 | −0.1022 | 0.061* | |
| H3 | 0.5249 | 0.1702 | −0.1632 | 0.067* | |
| H4 | 0.5506 | 0.2748 | 0.1178 | 0.057* | |
| H5 | 0.6569 | 0.2415 | 0.2656 | 0.055* | |
| H6 | 0.7510 | 0.2460 | 0.1977 | 0.055* | |
| H7 | 0.8537 | 0.2074 | 0.3303 | 0.058* | |
| H8 | 0.7724 | 0.2085 | 0.4187 | 0.058* | |
| H9 | 0.8880 | 0.1390 | 0.4795 | 0.056* | |
| H10 | 0.8790 | 0.1019 | 0.3674 | 0.056* | |
| H11 | 0.7338 | 0.0442 | 0.3288 | 0.054* | |
| H12 | 0.6530 | 0.0443 | 0.4178 | 0.054* | |
| H13 | 0.6301 | 0.1509 | 0.3839 | 0.056* | |
| H14 | 0.6161 | 0.1145 | 0.2718 | 0.056* | |
| H15 | 0.7599 | 0.0047 | 0.5485 | 0.057* | |
| H16 | 0.8557 | 0.0132 | 0.4853 | 0.057* | |
| H17 | 0.9651 | −0.0127 | 0.6331 | 0.054* | |
| H18 | 0.9701 | 0.0897 | 0.9181 | 0.065* | |
| H19 | 0.8387 | 0.1466 | 0.8555 | 0.068* | |
| H20 | 0.7346 | 0.1261 | 0.6069 | 0.077* |
| Cl1 | 0.0581 (6) | 0.0946 (8) | 0.0893 (8) | 0.0015 (5) | −0.0153 (6) | 0.0291 (5) |
| Cl2 | 0.0782 (7) | 0.1153 (8) | 0.0806 (8) | 0.0288 (6) | −0.0241 (6) | −0.0050 (6) |
| O1 | 0.0720 (15) | 0.0498 (13) | 0.0459 (15) | 0.0121 (12) | −0.0003 (12) | −0.0089 (12) |
| O2 | 0.0803 (17) | 0.0591 (14) | 0.0534 (17) | 0.0224 (13) | −0.0010 (13) | −0.0097 (12) |
| N1 | 0.0419 (15) | 0.0361 (14) | 0.0377 (17) | −0.0053 (13) | −0.0039 (13) | 0.0012 (13) |
| N2 | 0.0441 (16) | 0.0304 (14) | 0.0410 (17) | −0.0081 (13) | −0.0031 (13) | 0.0035 (13) |
| C1 | 0.049 (2) | 0.041 (2) | 0.040 (2) | −0.0044 (18) | 0.0014 (18) | 0.0048 (18) |
| C2 | 0.064 (2) | 0.050 (2) | 0.037 (2) | −0.014 (2) | 0.005 (2) | 0.0001 (19) |
| C3 | 0.059 (2) | 0.067 (2) | 0.041 (2) | −0.025 (2) | −0.008 (2) | 0.007 (2) |
| C4 | 0.043 (2) | 0.058 (2) | 0.057 (2) | −0.0100 (19) | −0.004 (2) | 0.018 (2) |
| C5 | 0.045 (2) | 0.047 (2) | 0.051 (2) | −0.0007 (18) | 0.002 (2) | 0.0018 (18) |
| C6 | 0.049 (2) | 0.040 (2) | 0.031 (2) | −0.0032 (17) | 0.0062 (17) | −0.0026 (17) |
| C7 | 0.058 (2) | 0.0411 (19) | 0.039 (2) | 0.0042 (17) | 0.0026 (18) | −0.0027 (16) |
| C8 | 0.059 (2) | 0.044 (2) | 0.041 (2) | −0.0142 (18) | −0.0025 (18) | −0.0003 (17) |
| C9 | 0.050 (2) | 0.045 (2) | 0.045 (2) | −0.0105 (18) | −0.0053 (17) | −0.0001 (18) |
| C10 | 0.046 (2) | 0.039 (2) | 0.050 (2) | −0.0127 (16) | −0.0053 (18) | 0.0023 (16) |
| C11 | 0.045 (2) | 0.051 (2) | 0.044 (2) | −0.0080 (17) | −0.0043 (16) | −0.0036 (17) |
| C12 | 0.058 (2) | 0.0357 (19) | 0.049 (2) | −0.0029 (16) | 0.0037 (18) | −0.0009 (16) |
| C13 | 0.049 (2) | 0.0341 (19) | 0.031 (2) | −0.0020 (17) | 0.0026 (17) | 0.0038 (16) |
| C14 | 0.052 (2) | 0.040 (2) | 0.043 (2) | 0.0028 (18) | 0.011 (2) | −0.0008 (17) |
| C15 | 0.050 (2) | 0.054 (2) | 0.048 (2) | 0.0009 (18) | −0.002 (2) | 0.0006 (19) |
| C16 | 0.060 (2) | 0.064 (2) | 0.039 (2) | −0.007 (2) | −0.0029 (19) | 0.0019 (19) |
| C17 | 0.077 (2) | 0.053 (2) | 0.039 (2) | 0.000 (2) | 0.011 (2) | −0.010 (2) |
| C18 | 0.054 (2) | 0.0357 (19) | 0.040 (2) | 0.0063 (17) | 0.0106 (19) | 0.0029 (17) |
| Cl1—C4 | 1.751 (3) | C15—C16 | 1.361 (4) |
| Cl2—C15 | 1.746 (3) | C16—C17 | 1.367 (5) |
| O1—C1 | 1.359 (3) | C17—C18 | 1.381 (4) |
| O2—C18 | 1.364 (3) | O1—H1 | 0.848 |
| N1—C7 | 1.469 (3) | O2—H20 | 0.852 |
| N1—C8 | 1.472 (3) | C2—H2 | 0.950 |
| N1—C11 | 1.472 (3) | C3—H3 | 0.950 |
| N2—C9 | 1.461 (3) | C5—H4 | 0.950 |
| N2—C10 | 1.467 (3) | C7—H5 | 0.950 |
| N2—C12 | 1.469 (3) | C7—H6 | 0.950 |
| C1—C2 | 1.377 (4) | C8—H7 | 0.950 |
| C1—C6 | 1.404 (4) | C8—H8 | 0.950 |
| C2—C3 | 1.369 (4) | C9—H9 | 0.950 |
| C3—C4 | 1.380 (5) | C9—H10 | 0.950 |
| C4—C5 | 1.371 (5) | C10—H11 | 0.950 |
| C5—C6 | 1.380 (4) | C10—H12 | 0.950 |
| C6—C7 | 1.507 (4) | C11—H13 | 0.950 |
| C8—C9 | 1.509 (4) | C11—H14 | 0.950 |
| C10—C11 | 1.512 (3) | C12—H15 | 0.950 |
| C12—C13 | 1.510 (4) | C12—H16 | 0.950 |
| C13—C14 | 1.386 (4) | C14—H17 | 0.950 |
| C13—C18 | 1.395 (4) | C16—H18 | 0.950 |
| C14—C15 | 1.383 (4) | C17—H19 | 0.950 |
| C7—N1—C8 | 110.6 (2) | C2—C3—H3 | 121.3 |
| C7—N1—C11 | 111.9 (2) | C4—C3—H3 | 119.9 |
| C8—N1—C11 | 108.6 (2) | C4—C5—H4 | 119.2 |
| C9—N2—C10 | 109.8 (2) | C6—C5—H4 | 120.4 |
| C9—N2—C12 | 111.2 (2) | N1—C7—H5 | 109.0 |
| C10—N2—C12 | 112.1 (2) | N1—C7—H6 | 107.8 |
| O1—C1—C2 | 118.5 (2) | C6—C7—H5 | 109.0 |
| O1—C1—C6 | 121.9 (2) | C6—C7—H6 | 108.1 |
| C2—C1—C6 | 119.5 (3) | H5—C7—H6 | 109.5 |
| C1—C2—C3 | 121.3 (3) | N1—C8—H7 | 108.5 |
| C2—C3—C4 | 118.8 (3) | N1—C8—H8 | 109.8 |
| Cl1—C4—C3 | 120.0 (2) | C9—C8—H7 | 110.0 |
| Cl1—C4—C5 | 118.9 (2) | C9—C8—H8 | 108.9 |
| C3—C4—C5 | 121.1 (3) | H7—C8—H8 | 109.5 |
| C4—C5—C6 | 120.3 (3) | N2—C9—H9 | 108.7 |
| C1—C6—C5 | 118.8 (2) | N2—C9—H10 | 109.4 |
| C1—C6—C7 | 120.9 (2) | C8—C9—H9 | 109.7 |
| C5—C6—C7 | 120.2 (2) | C8—C9—H10 | 108.7 |
| N1—C7—C6 | 113.4 (2) | H9—C9—H10 | 109.5 |
| N1—C8—C9 | 110.2 (2) | N2—C10—H11 | 109.6 |
| N2—C9—C8 | 110.9 (2) | N2—C10—H12 | 109.3 |
| N2—C10—C11 | 110.0 (2) | C11—C10—H11 | 108.2 |
| N1—C11—C10 | 110.5 (2) | C11—C10—H12 | 110.3 |
| N2—C12—C13 | 112.4 (2) | H11—C10—H12 | 109.5 |
| C12—C13—C14 | 120.3 (2) | N1—C11—H13 | 109.0 |
| C12—C13—C18 | 121.3 (2) | N1—C11—H14 | 109.3 |
| C14—C13—C18 | 118.3 (2) | C10—C11—H13 | 108.0 |
| C13—C14—C15 | 120.3 (2) | C10—C11—H14 | 110.6 |
| Cl2—C15—C14 | 119.1 (2) | H13—C11—H14 | 109.5 |
| Cl2—C15—C16 | 119.8 (2) | N2—C12—H15 | 108.6 |
| C14—C15—C16 | 121.0 (3) | N2—C12—H16 | 108.9 |
| C15—C16—C17 | 119.3 (3) | C13—C12—H15 | 109.0 |
| C16—C17—C18 | 121.1 (3) | C13—C12—H16 | 108.4 |
| O2—C18—C13 | 120.9 (2) | H15—C12—H16 | 109.5 |
| O2—C18—C17 | 119.1 (2) | C13—C14—H17 | 120.1 |
| C13—C18—C17 | 119.9 (3) | C15—C14—H17 | 119.6 |
| C1—O1—H1 | 107.2 | C15—C16—H18 | 119.9 |
| C18—O2—H20 | 107.0 | C17—C16—H18 | 120.8 |
| C1—C2—H2 | 119.1 | C16—C17—H19 | 119.9 |
| C3—C2—H2 | 119.5 | C18—C17—H19 | 118.9 |
| C7—N1—C8—C9 | −178.0 (2) | C3—C4—C5—C6 | 1.4 (5) |
| C8—N1—C7—C6 | 167.4 (2) | C4—C5—C6—C1 | −0.2 (4) |
| C7—N1—C11—C10 | 178.1 (2) | C4—C5—C6—C7 | 175.9 (2) |
| C11—N1—C7—C6 | −71.4 (3) | C1—C6—C7—N1 | −34.8 (3) |
| C8—N1—C11—C10 | −59.5 (2) | C5—C6—C7—N1 | 149.3 (2) |
| C11—N1—C8—C9 | 58.7 (2) | N1—C8—C9—N2 | −58.8 (3) |
| C9—N2—C10—C11 | −57.8 (2) | N2—C10—C11—N1 | 59.6 (2) |
| C10—N2—C9—C8 | 57.8 (2) | N2—C12—C13—C14 | −146.3 (2) |
| C9—N2—C12—C13 | 72.3 (3) | N2—C12—C13—C18 | 37.5 (3) |
| C12—N2—C9—C8 | −177.5 (2) | C12—C13—C14—C15 | −175.2 (2) |
| C10—N2—C12—C13 | −164.3 (2) | C12—C13—C18—O2 | −2.4 (4) |
| C12—N2—C10—C11 | 178.0 (2) | C12—C13—C18—C17 | 176.4 (2) |
| O1—C1—C2—C3 | −178.2 (3) | C14—C13—C18—O2 | −178.6 (2) |
| O1—C1—C6—C5 | 178.4 (2) | C14—C13—C18—C17 | 0.1 (3) |
| O1—C1—C6—C7 | 2.4 (4) | C18—C13—C14—C15 | 1.1 (4) |
| C2—C1—C6—C5 | −1.2 (4) | C13—C14—C15—Cl2 | 176.9 (2) |
| C2—C1—C6—C7 | −177.2 (2) | C13—C14—C15—C16 | −1.6 (4) |
| C6—C1—C2—C3 | 1.4 (5) | Cl2—C15—C16—C17 | −177.5 (2) |
| C1—C2—C3—C4 | −0.3 (5) | C14—C15—C16—C17 | 1.0 (5) |
| C2—C3—C4—Cl1 | 178.6 (2) | C15—C16—C17—C18 | 0.2 (5) |
| C2—C3—C4—C5 | −1.2 (5) | C16—C17—C18—O2 | 178.0 (3) |
| Cl1—C4—C5—C6 | −178.4 (2) | C16—C17—C18—C13 | −0.8 (5) |
| H··· | ||||
| O1—H1···N1 | 0.85 | 1.88 | 2.649 (3) | 150 |
| O2—H20···N2 | 0.85 | 1.87 | 2.647 (3) | 151 |
| C7—H6···O2i | 0.95 | 2.59 | 3.230 (3) | 125 |
| C12—H15···O1ii | 0.95 | 2.57 | 3.300 (3) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.85 | 1.88 | 2.649 (3) | 150 |
| O2—H20⋯N2 | 0.85 | 1.87 | 2.647 (3) | 151 |
| C7—H6⋯O2i | 0.95 | 2.59 | 3.230 (3) | 125 |
| C12—H15⋯O1ii | 0.95 | 2.56 | 3.300 (3) | 134 |
Symmetry codes: (i) ; (ii) .