Literature DB >> 21581286

4,4'-Dichloro-2,2'-(piperazine-1,4-diyldimethyl-ene)diphenol.

Koji Kubono1, Yuki Tsuno, Keita Tani, Kunihiko Yokoi.   

Abstract

In the titile compound, C(18)H(20)Cl(2)N(2)O(2), the piperazine ring adopts a chair conformation. The mol-ecule has a non-crystallographic inversion centre in the middle of the piperazine ring at approximate position (3/4, 1/8, 3/8). There are intra-molecular O-H⋯N hydrogen bonds forming S(6) ring motifs. Inter-molecular C-H⋯O hydrogen bonds generate anti-parallel C(5) chain motifs propagating along the b axis, forming sheets parallel to the bc plane with a first-level graph-set S(6)C(5)R(6) (6)(26).

Entities:  

Year:  2008        PMID: 21581286      PMCID: PMC2959987          DOI: 10.1107/S1600536808035769

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For graph-set notations for hydrogen bonds, see: Bernstein et al. (1995 ▶). For the synthesis of a ligand with two piperazine arms, see: Bharathi et al. (2006 ▶). For the use of piperazine derivatives as buffers, see: Good et al. (1966 ▶). For the monoclinic and ortho­rhom­bic polymorphs of a tetra­chloro-2,2′-(piperazine-1,4-diyldimethyl­ene)diphenol, see: Kubono & Yokoi (2007 ▶). For the structure of 1,4-bis­(2-hydr­oxy-5-methyl­benz­yl)piperazine, see: Kuppayee et al. (1999 ▶).

Experimental

Crystal data

C18H20Cl2N2O2 M = 367.26 Orthorhombic, a = 14.055 (4) Å b = 21.214 (11) Å c = 11.873 (3) Å V = 3540 (2) Å3 Z = 8 Mo Kα radiation μ = 0.38 mm−1 T = 298.1 K 0.18 × 0.13 × 0.13 mm

Data collection

Rigaku AFC-7R diffractometer Absorption correction: none 5928 measured reflections 4066 independent reflections 2735 reflections with F 2 > 2σ(F 2) R int = 0.039 3 standard reflections every 150 reflections intensity decay: 0.7%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.00 2739 reflections 237 parameters All H-atom parameters refined Δρmax = 0.33 e Å−3 Δρmin = −0.45 e Å−3 Data collection: WinAFC (Rigaku/MSC, 2006 ▶); cell refinement: WinAFC; data reduction: CrystalStructure (Rigaku/MSC, 2006 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808035769/si2120sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035769/si2120Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20Cl2N2O2F000 = 1536.00
Mr = 367.26Dx = 1.378 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ac 2abCell parameters from 18 reflections
a = 14.055 (4) Åθ = 13.7–16.9º
b = 21.214 (11) ŵ = 0.38 mm1
c = 11.873 (3) ÅT = 298.1 K
V = 3540 (2) Å3Prismatic, colorless
Z = 80.18 × 0.13 × 0.13 mm
Rigaku AFC-7R diffractometerθmax = 27.5º
ω scansh = −10→18
Absorption correction: nonek = 0→27
5928 measured reflectionsl = −8→15
4066 independent reflections3 standard reflections
2735 reflections with F2 > 2σ(F2) every 150 reflections
Rint = 0.039 intensity decay: 0.7%
Refinement on F2All H-atom parameters refined
R[F2 > 2σ(F2)] = 0.039  w = 1/[0.0011Fo2 + σ(Fo2)]/(4Fo2)
wR(F2) = 0.105(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.33 e Å3
2739 reflectionsΔρmin = −0.45 e Å3
237 parametersExtinction correction: none
Geometry. The molecule adopts a non-crystallographic inversion centre in the middle of the piperazine ring at an approximate position (3/4, 1/8, 3/8).
Refinement. Refinement was performed using reflections with F2 > 2.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Cl10.43588 (6)0.27754 (4)−0.07209 (8)0.0807 (3)
Cl21.07341 (7)−0.01127 (5)0.83011 (9)0.0914 (4)
O10.75085 (15)0.11534 (9)0.07111 (17)0.0559 (7)
O20.74244 (15)0.13266 (9)0.67705 (18)0.0643 (8)
N10.73683 (16)0.16416 (11)0.2758 (2)0.0385 (7)
N20.77032 (17)0.08768 (10)0.4717 (2)0.0385 (8)
C10.6764 (2)0.15283 (15)0.0418 (2)0.0435 (10)
C20.6298 (2)0.14079 (15)−0.0579 (2)0.0506 (11)
C30.5560 (2)0.17790 (18)−0.0936 (2)0.0558 (12)
C40.5283 (2)0.22809 (16)−0.0274 (3)0.0526 (12)
C50.5720 (2)0.24037 (15)0.0734 (2)0.0477 (11)
C60.6466 (2)0.20327 (14)0.1097 (2)0.0398 (10)
C70.6988 (2)0.21952 (13)0.2166 (2)0.0459 (10)
C80.8043 (2)0.18345 (14)0.3642 (2)0.0483 (10)
C90.8455 (2)0.12615 (13)0.4217 (2)0.0465 (10)
C100.7022 (2)0.06864 (13)0.3845 (2)0.0451 (10)
C110.6609 (2)0.12632 (13)0.3279 (2)0.0466 (10)
C120.8101 (2)0.03329 (13)0.5321 (2)0.0476 (10)
C130.8583 (2)0.05200 (14)0.6408 (2)0.0381 (10)
C140.9375 (2)0.01930 (13)0.6786 (2)0.0451 (11)
C150.9773 (2)0.03340 (15)0.7820 (3)0.0505 (11)
C160.9415 (2)0.08039 (17)0.8475 (2)0.0544 (12)
C170.8640 (2)0.11345 (15)0.8107 (3)0.0563 (12)
C180.8214 (2)0.09977 (14)0.7088 (2)0.0432 (11)
H10.76600.12470.13810.067*
H20.64880.1057−0.10220.061*
H30.52490.1702−0.16320.067*
H40.55060.27480.11780.057*
H50.65690.24150.26560.055*
H60.75100.24600.19770.055*
H70.85370.20740.33030.058*
H80.77240.20850.41870.058*
H90.88800.13900.47950.056*
H100.87900.10190.36740.056*
H110.73380.04420.32880.054*
H120.65300.04430.41780.054*
H130.63010.15090.38390.056*
H140.61610.11450.27180.056*
H150.75990.00470.54850.057*
H160.85570.01320.48530.057*
H170.9651−0.01270.63310.054*
H180.97010.08970.91810.065*
H190.83870.14660.85550.068*
H200.73460.12610.60690.077*
U11U22U33U12U13U23
Cl10.0581 (6)0.0946 (8)0.0893 (8)0.0015 (5)−0.0153 (6)0.0291 (5)
Cl20.0782 (7)0.1153 (8)0.0806 (8)0.0288 (6)−0.0241 (6)−0.0050 (6)
O10.0720 (15)0.0498 (13)0.0459 (15)0.0121 (12)−0.0003 (12)−0.0089 (12)
O20.0803 (17)0.0591 (14)0.0534 (17)0.0224 (13)−0.0010 (13)−0.0097 (12)
N10.0419 (15)0.0361 (14)0.0377 (17)−0.0053 (13)−0.0039 (13)0.0012 (13)
N20.0441 (16)0.0304 (14)0.0410 (17)−0.0081 (13)−0.0031 (13)0.0035 (13)
C10.049 (2)0.041 (2)0.040 (2)−0.0044 (18)0.0014 (18)0.0048 (18)
C20.064 (2)0.050 (2)0.037 (2)−0.014 (2)0.005 (2)0.0001 (19)
C30.059 (2)0.067 (2)0.041 (2)−0.025 (2)−0.008 (2)0.007 (2)
C40.043 (2)0.058 (2)0.057 (2)−0.0100 (19)−0.004 (2)0.018 (2)
C50.045 (2)0.047 (2)0.051 (2)−0.0007 (18)0.002 (2)0.0018 (18)
C60.049 (2)0.040 (2)0.031 (2)−0.0032 (17)0.0062 (17)−0.0026 (17)
C70.058 (2)0.0411 (19)0.039 (2)0.0042 (17)0.0026 (18)−0.0027 (16)
C80.059 (2)0.044 (2)0.041 (2)−0.0142 (18)−0.0025 (18)−0.0003 (17)
C90.050 (2)0.045 (2)0.045 (2)−0.0105 (18)−0.0053 (17)−0.0001 (18)
C100.046 (2)0.039 (2)0.050 (2)−0.0127 (16)−0.0053 (18)0.0023 (16)
C110.045 (2)0.051 (2)0.044 (2)−0.0080 (17)−0.0043 (16)−0.0036 (17)
C120.058 (2)0.0357 (19)0.049 (2)−0.0029 (16)0.0037 (18)−0.0009 (16)
C130.049 (2)0.0341 (19)0.031 (2)−0.0020 (17)0.0026 (17)0.0038 (16)
C140.052 (2)0.040 (2)0.043 (2)0.0028 (18)0.011 (2)−0.0008 (17)
C150.050 (2)0.054 (2)0.048 (2)0.0009 (18)−0.002 (2)0.0006 (19)
C160.060 (2)0.064 (2)0.039 (2)−0.007 (2)−0.0029 (19)0.0019 (19)
C170.077 (2)0.053 (2)0.039 (2)0.000 (2)0.011 (2)−0.010 (2)
C180.054 (2)0.0357 (19)0.040 (2)0.0063 (17)0.0106 (19)0.0029 (17)
Cl1—C41.751 (3)C15—C161.361 (4)
Cl2—C151.746 (3)C16—C171.367 (5)
O1—C11.359 (3)C17—C181.381 (4)
O2—C181.364 (3)O1—H10.848
N1—C71.469 (3)O2—H200.852
N1—C81.472 (3)C2—H20.950
N1—C111.472 (3)C3—H30.950
N2—C91.461 (3)C5—H40.950
N2—C101.467 (3)C7—H50.950
N2—C121.469 (3)C7—H60.950
C1—C21.377 (4)C8—H70.950
C1—C61.404 (4)C8—H80.950
C2—C31.369 (4)C9—H90.950
C3—C41.380 (5)C9—H100.950
C4—C51.371 (5)C10—H110.950
C5—C61.380 (4)C10—H120.950
C6—C71.507 (4)C11—H130.950
C8—C91.509 (4)C11—H140.950
C10—C111.512 (3)C12—H150.950
C12—C131.510 (4)C12—H160.950
C13—C141.386 (4)C14—H170.950
C13—C181.395 (4)C16—H180.950
C14—C151.383 (4)C17—H190.950
C7—N1—C8110.6 (2)C2—C3—H3121.3
C7—N1—C11111.9 (2)C4—C3—H3119.9
C8—N1—C11108.6 (2)C4—C5—H4119.2
C9—N2—C10109.8 (2)C6—C5—H4120.4
C9—N2—C12111.2 (2)N1—C7—H5109.0
C10—N2—C12112.1 (2)N1—C7—H6107.8
O1—C1—C2118.5 (2)C6—C7—H5109.0
O1—C1—C6121.9 (2)C6—C7—H6108.1
C2—C1—C6119.5 (3)H5—C7—H6109.5
C1—C2—C3121.3 (3)N1—C8—H7108.5
C2—C3—C4118.8 (3)N1—C8—H8109.8
Cl1—C4—C3120.0 (2)C9—C8—H7110.0
Cl1—C4—C5118.9 (2)C9—C8—H8108.9
C3—C4—C5121.1 (3)H7—C8—H8109.5
C4—C5—C6120.3 (3)N2—C9—H9108.7
C1—C6—C5118.8 (2)N2—C9—H10109.4
C1—C6—C7120.9 (2)C8—C9—H9109.7
C5—C6—C7120.2 (2)C8—C9—H10108.7
N1—C7—C6113.4 (2)H9—C9—H10109.5
N1—C8—C9110.2 (2)N2—C10—H11109.6
N2—C9—C8110.9 (2)N2—C10—H12109.3
N2—C10—C11110.0 (2)C11—C10—H11108.2
N1—C11—C10110.5 (2)C11—C10—H12110.3
N2—C12—C13112.4 (2)H11—C10—H12109.5
C12—C13—C14120.3 (2)N1—C11—H13109.0
C12—C13—C18121.3 (2)N1—C11—H14109.3
C14—C13—C18118.3 (2)C10—C11—H13108.0
C13—C14—C15120.3 (2)C10—C11—H14110.6
Cl2—C15—C14119.1 (2)H13—C11—H14109.5
Cl2—C15—C16119.8 (2)N2—C12—H15108.6
C14—C15—C16121.0 (3)N2—C12—H16108.9
C15—C16—C17119.3 (3)C13—C12—H15109.0
C16—C17—C18121.1 (3)C13—C12—H16108.4
O2—C18—C13120.9 (2)H15—C12—H16109.5
O2—C18—C17119.1 (2)C13—C14—H17120.1
C13—C18—C17119.9 (3)C15—C14—H17119.6
C1—O1—H1107.2C15—C16—H18119.9
C18—O2—H20107.0C17—C16—H18120.8
C1—C2—H2119.1C16—C17—H19119.9
C3—C2—H2119.5C18—C17—H19118.9
C7—N1—C8—C9−178.0 (2)C3—C4—C5—C61.4 (5)
C8—N1—C7—C6167.4 (2)C4—C5—C6—C1−0.2 (4)
C7—N1—C11—C10178.1 (2)C4—C5—C6—C7175.9 (2)
C11—N1—C7—C6−71.4 (3)C1—C6—C7—N1−34.8 (3)
C8—N1—C11—C10−59.5 (2)C5—C6—C7—N1149.3 (2)
C11—N1—C8—C958.7 (2)N1—C8—C9—N2−58.8 (3)
C9—N2—C10—C11−57.8 (2)N2—C10—C11—N159.6 (2)
C10—N2—C9—C857.8 (2)N2—C12—C13—C14−146.3 (2)
C9—N2—C12—C1372.3 (3)N2—C12—C13—C1837.5 (3)
C12—N2—C9—C8−177.5 (2)C12—C13—C14—C15−175.2 (2)
C10—N2—C12—C13−164.3 (2)C12—C13—C18—O2−2.4 (4)
C12—N2—C10—C11178.0 (2)C12—C13—C18—C17176.4 (2)
O1—C1—C2—C3−178.2 (3)C14—C13—C18—O2−178.6 (2)
O1—C1—C6—C5178.4 (2)C14—C13—C18—C170.1 (3)
O1—C1—C6—C72.4 (4)C18—C13—C14—C151.1 (4)
C2—C1—C6—C5−1.2 (4)C13—C14—C15—Cl2176.9 (2)
C2—C1—C6—C7−177.2 (2)C13—C14—C15—C16−1.6 (4)
C6—C1—C2—C31.4 (5)Cl2—C15—C16—C17−177.5 (2)
C1—C2—C3—C4−0.3 (5)C14—C15—C16—C171.0 (5)
C2—C3—C4—Cl1178.6 (2)C15—C16—C17—C180.2 (5)
C2—C3—C4—C5−1.2 (5)C16—C17—C18—O2178.0 (3)
Cl1—C4—C5—C6−178.4 (2)C16—C17—C18—C13−0.8 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.851.882.649 (3)150
O2—H20···N20.851.872.647 (3)151
C7—H6···O2i0.952.593.230 (3)125
C12—H15···O1ii0.952.573.300 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.851.882.649 (3)150
O2—H20⋯N20.851.872.647 (3)151
C7—H6⋯O2i0.952.593.230 (3)125
C12—H15⋯O1ii0.952.563.300 (3)134

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Monoclinic and orthorhombic polymorphs of 4,4',6,6'-tetrachloro-2,2'-(piperazine-1,4-diyldimethylene)diphenol.

Authors:  Koji Kubono; Kunihiko Yokoi
Journal:  Acta Crystallogr C       Date:  2007-08-17       Impact factor: 1.172

2.  Hydrogen ion buffers for biological research.

Authors:  N E Good; G D Winget; W Winter; T N Connolly; S Izawa; R M Singh
Journal:  Biochemistry       Date:  1966-02       Impact factor: 3.162

  2 in total
  1 in total

1.  A monoclinic polymorph of 4,4'-dichloro-2,2'-(piperazine-1,4-diyl-dimethyl-ene)diphenol.

Authors:  Koji Kubono; Yuki Tsuno; Keita Tani; Kunihiko Yokoi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-26
  1 in total

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