Literature DB >> 21581399

Isopropyl 2-(5-iodo-7-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title mol-ecule, C(15)H(17)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. In the crystal structure, inter-molecular I⋯O [2.994 (3) Å] halogen bonding links the mol-ecules into centrosymmetric dimers, which are further packed into ribbons along the c axis by inter-molecular sulfin-yl-sulfinyl inter-actions [S⋯O 3.128 (3) Å].

Entities:  

Year:  2008        PMID: 21581399      PMCID: PMC2960088          DOI: 10.1107/S1600536808038671

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar isopropyl 2-(3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives, see Choi et al. (2008a ▶,b ▶). For a review of halogen bonding, see Politzer et al. (2007 ▶). For a review of carbon­yl–carbonyl inter­actions, see Allen et al. (1998 ▶).

Experimental

Crystal data

C15H17IO4S M = 420.25 Monoclinic, a = 17.615 (2) Å b = 10.0905 (7) Å c = 19.144 (1) Å β = 99.177 (2)° V = 3359.2 (5) Å3 Z = 8 Mo Kα radiation μ = 2.04 mm−1 T = 298 (2) K 0.40 × 0.30 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.480, T max = 0.667 6667 measured reflections 2897 independent reflections 2172 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.064 S = 1.24 2897 reflections 192 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038671/cv2478sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038671/cv2478Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17IO4SF000 = 1664
Mr = 420.25Dx = 1.662 Mg m3
Monoclinic, C2/cMelting point = 420–421 K
Hall symbol: -C 2ycMo Kα radiation λ = 0.71073 Å
a = 17.615 (2) ÅCell parameters from 5394 reflections
b = 10.0905 (7) Åθ = 2.2–28.1º
c = 19.144 (1) ŵ = 2.04 mm1
β = 99.177 (2)ºT = 298 (2) K
V = 3359.2 (5) Å3Block, colourless
Z = 80.40 × 0.30 × 0.20 mm
Bruker SMART CCD diffractometer2897 independent reflections
Radiation source: fine-focus sealed tube2172 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.030
Detector resolution: 10.0 pixels mm-1θmax = 26.0º
T = 298(2) Kθmin = 2.5º
φ and ω scansh = −12→21
Absorption correction: multi-scan(SADABS; Sheldrick, 1999)k = −12→12
Tmin = 0.480, Tmax = 0.667l = −23→23
6667 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.064  w = 1/[σ2(Fo2)]
S = 1.24(Δ/σ)max < 0.001
2897 reflectionsΔρmax = 0.49 e Å3
192 parametersΔρmin = −0.37 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.513353 (18)0.743648 (18)−0.024404 (13)0.04774 (10)
S0.60070 (6)0.34161 (6)0.23510 (5)0.0450 (2)
O10.61238 (16)0.71392 (18)0.29955 (13)0.0445 (7)
O20.71791 (17)0.4874 (2)0.48324 (13)0.0503 (7)
O30.7643 (2)0.5249 (3)0.38247 (15)0.0783 (10)
O40.53494 (17)0.3086 (2)0.17899 (13)0.0554 (7)
C10.6014 (2)0.5163 (3)0.24557 (19)0.0408 (9)
C20.5868 (2)0.6160 (2)0.19074 (19)0.0382 (9)
C30.5656 (2)0.6170 (3)0.11784 (18)0.0389 (9)
H30.56040.53860.09200.047*
C40.5524 (2)0.7395 (2)0.0848 (2)0.0394 (8)
C50.5640 (2)0.8584 (3)0.12417 (19)0.0430 (9)
H50.55670.93880.10030.052*
C60.5853 (2)0.8597 (3)0.19600 (19)0.0414 (9)
C70.5950 (2)0.7356 (2)0.2277 (2)0.0385 (8)
C80.6142 (2)0.5781 (3)0.30852 (19)0.0409 (9)
C90.6276 (2)0.5310 (3)0.3828 (2)0.0470 (10)
H9A0.60210.44630.38510.056*
H9B0.60420.59320.41160.056*
C100.7106 (3)0.5155 (3)0.4138 (2)0.0452 (10)
C110.7939 (3)0.4653 (4)0.5226 (2)0.0575 (11)
H110.82620.42170.49220.069*
C120.7830 (3)0.3742 (4)0.5829 (2)0.0690 (13)
H12A0.75930.29330.56420.083*
H12B0.75070.41660.61210.083*
H12C0.83210.35480.61060.083*
C130.8288 (3)0.5958 (5)0.5478 (3)0.0918 (17)
H13A0.79710.63820.57750.110*
H13B0.83250.65130.50770.110*
H13C0.87920.58130.57410.110*
C140.5999 (3)0.9856 (3)0.2391 (2)0.0615 (12)
H14A0.59010.96980.28630.092*
H14B0.56641.05440.21760.092*
H14C0.65251.01250.24070.092*
C150.6855 (3)0.3293 (4)0.1950 (3)0.0887 (19)
H15A0.69470.23810.18480.133*
H15B0.72860.36360.22690.133*
H15C0.67870.37960.15190.133*
U11U22U33U12U13U23
I0.0565 (2)0.04572 (12)0.04033 (15)−0.00107 (11)0.00570 (13)−0.00037 (10)
S0.0481 (7)0.0287 (3)0.0571 (6)−0.0014 (4)0.0050 (5)0.0060 (3)
O10.056 (2)0.0353 (10)0.0405 (15)−0.0035 (10)0.0028 (14)0.0011 (9)
O20.0467 (19)0.0623 (14)0.0407 (16)0.0041 (13)0.0029 (14)0.0026 (12)
O30.050 (2)0.133 (2)0.054 (2)0.0157 (18)0.0137 (18)0.0208 (17)
O40.073 (2)0.0443 (11)0.0475 (17)−0.0087 (12)0.0045 (16)−0.0040 (11)
C10.042 (2)0.0309 (13)0.048 (2)−0.0029 (14)0.0013 (18)0.0044 (13)
C20.036 (2)0.0290 (13)0.049 (2)−0.0007 (13)0.0047 (19)0.0011 (13)
C30.041 (2)0.0303 (13)0.044 (2)−0.0048 (13)0.0030 (19)−0.0053 (13)
C40.038 (2)0.0395 (15)0.040 (2)−0.0008 (14)0.0057 (18)0.0016 (13)
C50.049 (3)0.0282 (13)0.051 (2)−0.0017 (14)0.007 (2)0.0047 (14)
C60.049 (3)0.0318 (14)0.042 (2)−0.0027 (14)0.0035 (19)−0.0004 (13)
C70.040 (2)0.0319 (14)0.041 (2)−0.0033 (13)0.0007 (18)−0.0019 (13)
C80.038 (2)0.0351 (14)0.048 (2)−0.0014 (14)0.0022 (19)0.0053 (14)
C90.046 (3)0.0473 (16)0.047 (2)−0.0063 (17)0.004 (2)0.0062 (15)
C100.047 (3)0.0417 (15)0.047 (2)0.0019 (16)0.008 (2)0.0035 (15)
C110.047 (3)0.078 (2)0.045 (3)0.019 (2)−0.002 (2)0.0008 (19)
C120.084 (4)0.068 (2)0.051 (3)0.014 (2)−0.002 (3)0.0033 (19)
C130.077 (4)0.117 (4)0.076 (4)−0.037 (3)−0.004 (3)0.007 (3)
C140.086 (4)0.0306 (14)0.064 (3)−0.0021 (17)−0.002 (2)−0.0057 (15)
C150.073 (4)0.052 (2)0.151 (6)0.006 (2)0.049 (4)−0.001 (2)
I—C42.095 (4)C6—C141.514 (4)
I—O4i2.994 (3)C8—C91.483 (5)
S—O41.486 (3)C9—C101.496 (5)
S—O4ii3.128 (3)C9—H9A0.9700
S—C11.773 (3)C9—H9B0.9700
S—C151.789 (4)C11—C131.500 (6)
O1—C71.378 (4)C11—C121.511 (5)
O1—C81.381 (3)C11—H110.9800
O2—C101.346 (4)C12—H12A0.9600
O2—C111.445 (6)C12—H12B0.9600
O3—C101.201 (4)C12—H12C0.9600
C1—C81.344 (5)C13—H13A0.9600
C1—C21.447 (5)C13—H13B0.9600
C2—C31.386 (5)C13—H13C0.9600
C2—C71.395 (4)C14—H14A0.9600
C3—C41.392 (4)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C4—C51.414 (4)C15—H15A0.9600
C5—C61.367 (5)C15—H15B0.9600
C5—H50.9300C15—H15C0.9600
C6—C71.390 (4)
I···O4i2.994 (3)S···O4ii3.128 (3)
O4—S—C1107.19 (17)H9A—C9—H9B107.6
C4—I—O4i168.51 (9)O3—C10—O2123.5 (4)
O4—S—C15106.4 (2)O3—C10—C9126.3 (4)
C1—S—C1597.22 (16)O2—C10—C9110.3 (3)
C7—O1—C8106.2 (2)O2—C11—C13109.3 (3)
C10—O2—C11118.8 (3)O2—C11—C12105.8 (4)
C8—C1—C2108.2 (3)C13—C11—C12112.6 (4)
C8—C1—S124.1 (3)O2—C11—H11109.7
C2—C1—S127.7 (3)C13—C11—H11109.7
C3—C2—C7119.6 (3)C12—C11—H11109.7
C3—C2—C1136.4 (3)C11—C12—H12A109.5
C7—C2—C1104.0 (3)C11—C12—H12B109.5
C2—C3—C4117.6 (3)H12A—C12—H12B109.5
C2—C3—H3121.2C11—C12—H12C109.5
C4—C3—H3121.2H12A—C12—H12C109.5
C3—C4—C5120.8 (4)H12B—C12—H12C109.5
C3—C4—I118.4 (2)C11—C13—H13A109.5
C5—C4—I120.7 (2)C11—C13—H13B109.5
C6—C5—C4122.5 (3)H13A—C13—H13B109.5
C6—C5—H5118.7C11—C13—H13C109.5
C4—C5—H5118.7H13A—C13—H13C109.5
C5—C6—C7115.2 (3)H13B—C13—H13C109.5
C5—C6—C14123.5 (3)C6—C14—H14A109.5
C7—C6—C14121.3 (3)C6—C14—H14B109.5
O1—C7—C6124.8 (3)H14A—C14—H14B109.5
O1—C7—C2110.9 (2)C6—C14—H14C109.5
C6—C7—C2124.2 (4)H14A—C14—H14C109.5
C1—C8—O1110.6 (3)H14B—C14—H14C109.5
C1—C8—C9133.6 (3)S—C15—H15A109.5
O1—C8—C9115.8 (3)S—C15—H15B109.5
C8—C9—C10114.2 (3)H15A—C15—H15B109.5
C8—C9—H9A108.7S—C15—H15C109.5
C10—C9—H9A108.7H15A—C15—H15C109.5
C8—C9—H9B108.7H15B—C15—H15C109.5
C10—C9—H9B108.7
O4—S—C1—C8137.8 (3)C5—C6—C7—C22.3 (6)
C15—S—C1—C8−112.5 (4)C14—C6—C7—C2−176.2 (4)
O4—S—C1—C2−40.3 (4)C3—C2—C7—O1176.9 (3)
C15—S—C1—C269.4 (4)C1—C2—C7—O1−0.6 (4)
C8—C1—C2—C3−175.0 (4)C3—C2—C7—C6−1.9 (6)
S—C1—C2—C33.4 (7)C1—C2—C7—C6−179.4 (4)
C8—C1—C2—C71.9 (4)C2—C1—C8—O1−2.5 (4)
S—C1—C2—C7−179.8 (3)S—C1—C8—O1179.1 (3)
C7—C2—C3—C4−0.8 (5)C2—C1—C8—C9175.8 (4)
C1—C2—C3—C4175.7 (4)S—C1—C8—C9−2.6 (6)
C2—C3—C4—C53.0 (5)C7—O1—C8—C12.1 (4)
C2—C3—C4—I−176.1 (2)C7—O1—C8—C9−176.6 (3)
C3—C4—C5—C6−2.7 (6)C1—C8—C9—C1093.3 (5)
I—C4—C5—C6176.4 (3)O1—C8—C9—C10−88.4 (4)
C4—C5—C6—C70.1 (5)C11—O2—C10—O3−0.9 (5)
C4—C5—C6—C14178.5 (4)C11—O2—C10—C9178.4 (3)
C8—O1—C7—C6178.0 (4)C8—C9—C10—O3−7.7 (5)
C8—O1—C7—C2−0.8 (4)C8—C9—C10—O2172.9 (2)
C5—C6—C7—O1−176.4 (3)C10—O2—C11—C1386.0 (4)
C14—C6—C7—O15.1 (6)C10—O2—C11—C12−152.5 (3)
Table 1

Selected interatomic distances (Å)

I⋯O4i2.994 (3)
S⋯O4ii3.128 (3)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

3.  Isopropyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

4.  Isopropyl 2-(5-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09
  4 in total
  1 in total

1.  Methyl 2-(5-iodo-7-methyl-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14
  1 in total

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