Literature DB >> 21581381

Benzaldehyde thio-semicarbazone.

Lingqian Kong1, Yan Qiao, Ji-Dong Zhang, Xiu-Ping Ju.   

Abstract

The title compound, C(8)H(9)N(3)S, contains two mol-ecules in the asymmetric unit. One mol-ecule is close to being planar (r.m.s. deviation from the mean plane = 0.06 Å for the non-H atoms), while the other exhibits a dihedral angle of 21.7 (1)° between the benzene ring and the mean plane of the thio-semicarbazone unit. Inter-molecular N-H⋯S hydrogen bonds link the mol-ecules into layers parallel to the (010) plane.

Entities:  

Year:  2008        PMID: 21581381      PMCID: PMC2960035          DOI: 10.1107/S1600536808038270

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature concerning aryl­hydrazone compounds, see: Beraldo & Gambino (2004 ▶); Bondock et al. (2007 ▶). For the related 2,4-dichloro­benzyl­idene compound, see: Jing et al. (2006 ▶).

Experimental

Crystal data

C8H9N3S M = 179.24 Triclinic, a = 5.8692 (13) Å b = 12.513 (2) Å c = 13.519 (2) Å α = 112.735 (3)° β = 95.384 (2)° γ = 96.153 (2)° V = 900.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 298 (2) K 0.24 × 0.13 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.930, T max = 0.970 4740 measured reflections 3124 independent reflections 1846 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.162 S = 0.95 3124 reflections 217 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038270/bi2310sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038270/bi2310Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N3SZ = 4
Mr = 179.24F000 = 376
Triclinic, P1Dx = 1.322 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 5.8692 (13) ÅCell parameters from 1310 reflections
b = 12.513 (2) Åθ = 2.9–25.0º
c = 13.519 (2) ŵ = 0.31 mm1
α = 112.735 (3)ºT = 298 (2) K
β = 95.384 (2)ºBlock, orange
γ = 96.153 (2)º0.24 × 0.13 × 0.10 mm
V = 900.4 (3) Å3
Bruker SMART CCD area-detector diffractometer3124 independent reflections
Radiation source: fine-focus sealed tube1846 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.039
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.930, Tmax = 0.970k = −12→14
4740 measured reflectionsl = −16→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.162  w = 1/[σ2(Fo2) + (0.0856P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max < 0.001
3124 reflectionsΔρmax = 0.31 e Å3
217 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9674 (5)0.8260 (3)0.9684 (2)0.0484 (8)
N21.1667 (5)0.8822 (3)0.9512 (2)0.0504 (8)
H21.29340.89990.99560.061*
N30.9536 (5)0.8863 (3)0.8034 (2)0.0550 (9)
H3A0.83310.85630.82080.066*
H3B0.94140.90200.74670.066*
N40.3374 (5)0.7659 (3)0.4823 (2)0.0486 (8)
N50.4649 (5)0.8653 (3)0.5625 (2)0.0518 (8)
H50.42000.89500.62490.062*
N60.7036 (6)0.8737 (3)0.4423 (3)0.0612 (10)
H6A0.60920.81660.39300.073*
H6B0.82620.90310.42590.073*
S11.40293 (17)0.96409 (10)0.83250 (8)0.0561 (3)
S20.83277 (19)1.02721 (9)0.64490 (8)0.0610 (4)
C10.9813 (7)0.8063 (3)1.0543 (3)0.0500 (9)
H11.11690.83411.10400.060*
C20.7837 (7)0.7398 (3)1.0749 (3)0.0493 (10)
C30.5747 (7)0.7039 (3)1.0076 (3)0.0569 (10)
H30.55660.72290.94750.068*
C40.3920 (8)0.6403 (4)1.0277 (4)0.0660 (12)
H40.25160.61670.98140.079*
C50.4178 (9)0.6118 (4)1.1169 (4)0.0700 (13)
H5A0.29500.56901.13090.084*
C60.6255 (9)0.6472 (4)1.1845 (4)0.0675 (12)
H60.64310.62831.24470.081*
C70.8081 (8)0.7104 (3)1.1640 (3)0.0584 (11)
H70.94860.73361.21000.070*
C81.1574 (6)0.9084 (3)0.8637 (3)0.0438 (9)
C90.1484 (7)0.7251 (3)0.5034 (3)0.0484 (9)
H90.09690.76580.56870.058*
C100.0129 (6)0.6152 (3)0.4263 (3)0.0455 (9)
C11−0.2018 (7)0.5775 (4)0.4462 (4)0.0607 (11)
H11−0.26220.62460.50650.073*
C12−0.3267 (8)0.4700 (4)0.3766 (4)0.0695 (13)
H12−0.47160.44530.38980.083*
C13−0.2378 (9)0.4002 (4)0.2889 (4)0.0736 (13)
H13−0.32050.32700.24350.088*
C14−0.0287 (9)0.4368 (4)0.2671 (4)0.0730 (13)
H140.02870.38930.20600.088*
C150.0981 (7)0.5436 (3)0.3350 (3)0.0576 (11)
H150.24100.56800.31980.069*
C160.6604 (6)0.9162 (3)0.5434 (3)0.0443 (9)
U11U22U33U12U13U23
N10.0460 (19)0.0479 (18)0.0522 (19)0.0088 (15)0.0119 (15)0.0195 (15)
N20.0434 (18)0.056 (2)0.0511 (19)0.0056 (15)0.0037 (15)0.0225 (16)
N30.0415 (19)0.072 (2)0.0521 (19)−0.0021 (16)0.0018 (16)0.0296 (17)
N40.0452 (19)0.0479 (18)0.0471 (18)−0.0024 (15)0.0008 (15)0.0170 (15)
N50.048 (2)0.0513 (19)0.0488 (19)−0.0080 (15)0.0049 (15)0.0170 (15)
N60.055 (2)0.063 (2)0.055 (2)−0.0165 (17)0.0107 (17)0.0171 (17)
S10.0434 (6)0.0700 (7)0.0494 (6)0.0008 (5)0.0081 (5)0.0196 (5)
S20.0595 (7)0.0634 (7)0.0504 (6)−0.0189 (5)−0.0037 (5)0.0224 (5)
C10.054 (2)0.046 (2)0.049 (2)0.0123 (19)0.0080 (19)0.0165 (18)
C20.060 (3)0.039 (2)0.047 (2)0.0102 (19)0.014 (2)0.0133 (17)
C30.058 (3)0.057 (3)0.056 (2)0.012 (2)0.004 (2)0.023 (2)
C40.054 (3)0.060 (3)0.082 (3)0.013 (2)0.011 (2)0.024 (2)
C50.078 (3)0.053 (3)0.083 (3)0.010 (2)0.033 (3)0.028 (2)
C60.088 (4)0.058 (3)0.060 (3)0.011 (3)0.021 (3)0.026 (2)
C70.071 (3)0.048 (2)0.050 (2)0.004 (2)0.006 (2)0.0163 (19)
C80.044 (2)0.043 (2)0.040 (2)0.0094 (17)0.0079 (18)0.0112 (17)
C90.044 (2)0.050 (2)0.051 (2)0.0031 (18)0.0108 (18)0.0215 (18)
C100.039 (2)0.044 (2)0.054 (2)0.0005 (16)0.0022 (17)0.0224 (18)
C110.049 (2)0.062 (3)0.074 (3)−0.001 (2)0.013 (2)0.032 (2)
C120.047 (3)0.070 (3)0.094 (4)−0.012 (2)−0.001 (2)0.043 (3)
C130.078 (3)0.048 (3)0.081 (3)−0.012 (2)−0.015 (3)0.022 (2)
C140.078 (3)0.062 (3)0.066 (3)0.002 (3)0.005 (3)0.015 (2)
C150.052 (2)0.053 (2)0.063 (3)0.000 (2)0.007 (2)0.020 (2)
C160.044 (2)0.044 (2)0.048 (2)−0.0003 (17)0.0004 (18)0.0248 (18)
N1—C11.274 (5)C3—H30.930
N1—N21.385 (4)C4—C51.384 (6)
N2—C81.342 (5)C4—H40.930
N2—H20.860C5—C61.371 (7)
N3—C81.320 (5)C5—H5A0.930
N3—H3A0.860C6—C71.377 (6)
N3—H3B0.860C6—H60.930
N4—C91.274 (5)C7—H70.930
N4—N51.375 (4)C9—C101.453 (5)
N5—C161.347 (4)C9—H90.930
N5—H50.860C10—C111.385 (5)
N6—C161.321 (4)C10—C151.390 (5)
N6—H6A0.860C11—C121.383 (6)
N6—H6B0.860C11—H110.930
S1—C81.693 (4)C12—C131.362 (6)
S2—C161.674 (4)C12—H120.930
C1—C21.466 (5)C13—C141.362 (6)
C1—H10.930C13—H130.930
C2—C31.375 (5)C14—C151.376 (6)
C2—C71.388 (5)C14—H140.930
C3—C41.377 (6)C15—H150.930
C1—N1—N2116.5 (3)C7—C6—H6119.8
C8—N2—N1118.4 (3)C6—C7—C2120.4 (4)
C8—N2—H2120.8C6—C7—H7119.8
N1—N2—H2120.8C2—C7—H7119.8
C8—N3—H3A120.0N3—C8—N2117.6 (3)
C8—N3—H3B120.0N3—C8—S1122.5 (3)
H3A—N3—H3B120.0N2—C8—S1119.9 (3)
C9—N4—N5117.1 (3)N4—C9—C10120.4 (4)
C16—N5—N4120.0 (3)N4—C9—H9119.8
C16—N5—H5120.0C10—C9—H9119.8
N4—N5—H5120.0C11—C10—C15118.8 (4)
C16—N6—H6A120.0C11—C10—C9119.6 (4)
C16—N6—H6B120.0C15—C10—C9121.6 (3)
H6A—N6—H6B120.0C12—C11—C10120.1 (4)
N1—C1—C2120.0 (4)C12—C11—H11119.9
N1—C1—H1120.0C10—C11—H11119.9
C2—C1—H1120.0C13—C12—C11120.1 (4)
C3—C2—C7118.8 (4)C13—C12—H12119.9
C3—C2—C1121.9 (4)C11—C12—H12119.9
C7—C2—C1119.3 (4)C14—C13—C12120.5 (4)
C2—C3—C4121.0 (4)C14—C13—H13119.8
C2—C3—H3119.5C12—C13—H13119.8
C4—C3—H3119.5C13—C14—C15120.4 (5)
C3—C4—C5119.8 (5)C13—C14—H14119.8
C3—C4—H4120.1C15—C14—H14119.8
C5—C4—H4120.1C14—C15—C10120.1 (4)
C6—C5—C4119.7 (4)C14—C15—H15119.9
C6—C5—H5A120.2C10—C15—H15119.9
C4—C5—H5A120.2N6—C16—N5116.4 (3)
C5—C6—C7120.4 (4)N6—C16—S2123.6 (3)
C5—C6—H6119.8N5—C16—S2120.0 (3)
C1—N1—N2—C8−177.7 (3)N1—N2—C8—S1−173.6 (2)
C9—N4—N5—C16−176.7 (3)N5—N4—C9—C10−175.1 (3)
N2—N1—C1—C2−175.6 (3)N4—C9—C10—C11−174.2 (4)
N1—C1—C2—C3−4.5 (6)N4—C9—C10—C158.9 (6)
N1—C1—C2—C7174.5 (4)C15—C10—C11—C120.6 (6)
C7—C2—C3—C40.2 (6)C9—C10—C11—C12−176.4 (4)
C1—C2—C3—C4179.3 (4)C10—C11—C12—C130.8 (7)
C2—C3—C4—C50.0 (6)C11—C12—C13—C14−1.9 (7)
C3—C4—C5—C60.0 (6)C12—C13—C14—C151.7 (7)
C4—C5—C6—C7−0.2 (7)C13—C14—C15—C10−0.2 (7)
C5—C6—C7—C20.4 (6)C11—C10—C15—C14−0.9 (6)
C3—C2—C7—C6−0.4 (6)C9—C10—C15—C14176.0 (4)
C1—C2—C7—C6−179.5 (3)N4—N5—C16—N67.6 (5)
N1—N2—C8—N34.7 (5)N4—N5—C16—S2−172.6 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.862.643.443 (3)155
N3—H3A···S1ii0.862.983.488 (3)120
N5—H5···S1ii0.862.613.441 (3)162
N6—H6B···S2iii0.862.513.368 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.862.643.443 (3)155
N3—H3A⋯S1ii0.862.983.488 (3)120
N5—H5⋯S1ii0.862.613.441 (3)162
N6—H6B⋯S2iii0.862.513.368 (3)173

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

Review 1.  The wide pharmacological versatility of semicarbazones, thiosemicarba-zones and their metal complexes.

Authors:  Heloisa Beraldo; Dinorah Gambino
Journal:  Mini Rev Med Chem       Date:  2004-01       Impact factor: 3.862

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antimicrobial evaluation of some new thiazole, thiazolidinone and thiazoline derivatives starting from 1-chloro-3,4-dihydronaphthalene-2-carboxaldehyde.

Authors:  Samir Bondock; Wesam Khalifa; Ahmed A Fadda
Journal:  Eur J Med Chem       Date:  2007-01-13       Impact factor: 6.514

  3 in total

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