| Literature DB >> 21581381 |
Lingqian Kong1, Yan Qiao, Ji-Dong Zhang, Xiu-Ping Ju.
Abstract
The title compound, C(8)H(9)N(3)S, contains two mol-ecules in the asymmetric unit. One mol-ecule is close to being planar (r.m.s. deviation from the mean plane = 0.06 Å for the non-H atoms), while the other exhibits a dihedral angle of 21.7 (1)° between the benzene ring and the mean plane of the thio-semicarbazone unit. Inter-molecular N-H⋯S hydrogen bonds link the mol-ecules into layers parallel to the (010) plane.Entities:
Year: 2008 PMID: 21581381 PMCID: PMC2960035 DOI: 10.1107/S1600536808038270
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H9N3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1310 reflections | |
| θ = 2.9–25.0º | |
| µ = 0.31 mm−1 | |
| α = 112.735 (3)º | |
| β = 95.384 (2)º | Block, orange |
| γ = 96.153 (2)º | 0.24 × 0.13 × 0.10 mm |
| Bruker SMART CCD area-detector diffractometer | 3124 independent reflections |
| Radiation source: fine-focus sealed tube | 1846 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 1.7º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 4740 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 3124 reflections | Δρmax = 0.31 e Å−3 |
| 217 parameters | Δρmin = −0.27 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.9674 (5) | 0.8260 (3) | 0.9684 (2) | 0.0484 (8) | |
| N2 | 1.1667 (5) | 0.8822 (3) | 0.9512 (2) | 0.0504 (8) | |
| H2 | 1.2934 | 0.8999 | 0.9956 | 0.061* | |
| N3 | 0.9536 (5) | 0.8863 (3) | 0.8034 (2) | 0.0550 (9) | |
| H3A | 0.8331 | 0.8563 | 0.8208 | 0.066* | |
| H3B | 0.9414 | 0.9020 | 0.7467 | 0.066* | |
| N4 | 0.3374 (5) | 0.7659 (3) | 0.4823 (2) | 0.0486 (8) | |
| N5 | 0.4649 (5) | 0.8653 (3) | 0.5625 (2) | 0.0518 (8) | |
| H5 | 0.4200 | 0.8950 | 0.6249 | 0.062* | |
| N6 | 0.7036 (6) | 0.8737 (3) | 0.4423 (3) | 0.0612 (10) | |
| H6A | 0.6092 | 0.8166 | 0.3930 | 0.073* | |
| H6B | 0.8262 | 0.9031 | 0.4259 | 0.073* | |
| S1 | 1.40293 (17) | 0.96409 (10) | 0.83250 (8) | 0.0561 (3) | |
| S2 | 0.83277 (19) | 1.02721 (9) | 0.64490 (8) | 0.0610 (4) | |
| C1 | 0.9813 (7) | 0.8063 (3) | 1.0543 (3) | 0.0500 (9) | |
| H1 | 1.1169 | 0.8341 | 1.1040 | 0.060* | |
| C2 | 0.7837 (7) | 0.7398 (3) | 1.0749 (3) | 0.0493 (10) | |
| C3 | 0.5747 (7) | 0.7039 (3) | 1.0076 (3) | 0.0569 (10) | |
| H3 | 0.5566 | 0.7229 | 0.9475 | 0.068* | |
| C4 | 0.3920 (8) | 0.6403 (4) | 1.0277 (4) | 0.0660 (12) | |
| H4 | 0.2516 | 0.6167 | 0.9814 | 0.079* | |
| C5 | 0.4178 (9) | 0.6118 (4) | 1.1169 (4) | 0.0700 (13) | |
| H5A | 0.2950 | 0.5690 | 1.1309 | 0.084* | |
| C6 | 0.6255 (9) | 0.6472 (4) | 1.1845 (4) | 0.0675 (12) | |
| H6 | 0.6431 | 0.6283 | 1.2447 | 0.081* | |
| C7 | 0.8081 (8) | 0.7104 (3) | 1.1640 (3) | 0.0584 (11) | |
| H7 | 0.9486 | 0.7336 | 1.2100 | 0.070* | |
| C8 | 1.1574 (6) | 0.9084 (3) | 0.8637 (3) | 0.0438 (9) | |
| C9 | 0.1484 (7) | 0.7251 (3) | 0.5034 (3) | 0.0484 (9) | |
| H9 | 0.0969 | 0.7658 | 0.5687 | 0.058* | |
| C10 | 0.0129 (6) | 0.6152 (3) | 0.4263 (3) | 0.0455 (9) | |
| C11 | −0.2018 (7) | 0.5775 (4) | 0.4462 (4) | 0.0607 (11) | |
| H11 | −0.2622 | 0.6246 | 0.5065 | 0.073* | |
| C12 | −0.3267 (8) | 0.4700 (4) | 0.3766 (4) | 0.0695 (13) | |
| H12 | −0.4716 | 0.4453 | 0.3898 | 0.083* | |
| C13 | −0.2378 (9) | 0.4002 (4) | 0.2889 (4) | 0.0736 (13) | |
| H13 | −0.3205 | 0.3270 | 0.2435 | 0.088* | |
| C14 | −0.0287 (9) | 0.4368 (4) | 0.2671 (4) | 0.0730 (13) | |
| H14 | 0.0287 | 0.3893 | 0.2060 | 0.088* | |
| C15 | 0.0981 (7) | 0.5436 (3) | 0.3350 (3) | 0.0576 (11) | |
| H15 | 0.2410 | 0.5680 | 0.3198 | 0.069* | |
| C16 | 0.6604 (6) | 0.9162 (3) | 0.5434 (3) | 0.0443 (9) |
| N1 | 0.0460 (19) | 0.0479 (18) | 0.0522 (19) | 0.0088 (15) | 0.0119 (15) | 0.0195 (15) |
| N2 | 0.0434 (18) | 0.056 (2) | 0.0511 (19) | 0.0056 (15) | 0.0037 (15) | 0.0225 (16) |
| N3 | 0.0415 (19) | 0.072 (2) | 0.0521 (19) | −0.0021 (16) | 0.0018 (16) | 0.0296 (17) |
| N4 | 0.0452 (19) | 0.0479 (18) | 0.0471 (18) | −0.0024 (15) | 0.0008 (15) | 0.0170 (15) |
| N5 | 0.048 (2) | 0.0513 (19) | 0.0488 (19) | −0.0080 (15) | 0.0049 (15) | 0.0170 (15) |
| N6 | 0.055 (2) | 0.063 (2) | 0.055 (2) | −0.0165 (17) | 0.0107 (17) | 0.0171 (17) |
| S1 | 0.0434 (6) | 0.0700 (7) | 0.0494 (6) | 0.0008 (5) | 0.0081 (5) | 0.0196 (5) |
| S2 | 0.0595 (7) | 0.0634 (7) | 0.0504 (6) | −0.0189 (5) | −0.0037 (5) | 0.0224 (5) |
| C1 | 0.054 (2) | 0.046 (2) | 0.049 (2) | 0.0123 (19) | 0.0080 (19) | 0.0165 (18) |
| C2 | 0.060 (3) | 0.039 (2) | 0.047 (2) | 0.0102 (19) | 0.014 (2) | 0.0133 (17) |
| C3 | 0.058 (3) | 0.057 (3) | 0.056 (2) | 0.012 (2) | 0.004 (2) | 0.023 (2) |
| C4 | 0.054 (3) | 0.060 (3) | 0.082 (3) | 0.013 (2) | 0.011 (2) | 0.024 (2) |
| C5 | 0.078 (3) | 0.053 (3) | 0.083 (3) | 0.010 (2) | 0.033 (3) | 0.028 (2) |
| C6 | 0.088 (4) | 0.058 (3) | 0.060 (3) | 0.011 (3) | 0.021 (3) | 0.026 (2) |
| C7 | 0.071 (3) | 0.048 (2) | 0.050 (2) | 0.004 (2) | 0.006 (2) | 0.0163 (19) |
| C8 | 0.044 (2) | 0.043 (2) | 0.040 (2) | 0.0094 (17) | 0.0079 (18) | 0.0112 (17) |
| C9 | 0.044 (2) | 0.050 (2) | 0.051 (2) | 0.0031 (18) | 0.0108 (18) | 0.0215 (18) |
| C10 | 0.039 (2) | 0.044 (2) | 0.054 (2) | 0.0005 (16) | 0.0022 (17) | 0.0224 (18) |
| C11 | 0.049 (2) | 0.062 (3) | 0.074 (3) | −0.001 (2) | 0.013 (2) | 0.032 (2) |
| C12 | 0.047 (3) | 0.070 (3) | 0.094 (4) | −0.012 (2) | −0.001 (2) | 0.043 (3) |
| C13 | 0.078 (3) | 0.048 (3) | 0.081 (3) | −0.012 (2) | −0.015 (3) | 0.022 (2) |
| C14 | 0.078 (3) | 0.062 (3) | 0.066 (3) | 0.002 (3) | 0.005 (3) | 0.015 (2) |
| C15 | 0.052 (2) | 0.053 (2) | 0.063 (3) | 0.000 (2) | 0.007 (2) | 0.020 (2) |
| C16 | 0.044 (2) | 0.044 (2) | 0.048 (2) | −0.0003 (17) | 0.0004 (18) | 0.0248 (18) |
| N1—C1 | 1.274 (5) | C3—H3 | 0.930 |
| N1—N2 | 1.385 (4) | C4—C5 | 1.384 (6) |
| N2—C8 | 1.342 (5) | C4—H4 | 0.930 |
| N2—H2 | 0.860 | C5—C6 | 1.371 (7) |
| N3—C8 | 1.320 (5) | C5—H5A | 0.930 |
| N3—H3A | 0.860 | C6—C7 | 1.377 (6) |
| N3—H3B | 0.860 | C6—H6 | 0.930 |
| N4—C9 | 1.274 (5) | C7—H7 | 0.930 |
| N4—N5 | 1.375 (4) | C9—C10 | 1.453 (5) |
| N5—C16 | 1.347 (4) | C9—H9 | 0.930 |
| N5—H5 | 0.860 | C10—C11 | 1.385 (5) |
| N6—C16 | 1.321 (4) | C10—C15 | 1.390 (5) |
| N6—H6A | 0.860 | C11—C12 | 1.383 (6) |
| N6—H6B | 0.860 | C11—H11 | 0.930 |
| S1—C8 | 1.693 (4) | C12—C13 | 1.362 (6) |
| S2—C16 | 1.674 (4) | C12—H12 | 0.930 |
| C1—C2 | 1.466 (5) | C13—C14 | 1.362 (6) |
| C1—H1 | 0.930 | C13—H13 | 0.930 |
| C2—C3 | 1.375 (5) | C14—C15 | 1.376 (6) |
| C2—C7 | 1.388 (5) | C14—H14 | 0.930 |
| C3—C4 | 1.377 (6) | C15—H15 | 0.930 |
| C1—N1—N2 | 116.5 (3) | C7—C6—H6 | 119.8 |
| C8—N2—N1 | 118.4 (3) | C6—C7—C2 | 120.4 (4) |
| C8—N2—H2 | 120.8 | C6—C7—H7 | 119.8 |
| N1—N2—H2 | 120.8 | C2—C7—H7 | 119.8 |
| C8—N3—H3A | 120.0 | N3—C8—N2 | 117.6 (3) |
| C8—N3—H3B | 120.0 | N3—C8—S1 | 122.5 (3) |
| H3A—N3—H3B | 120.0 | N2—C8—S1 | 119.9 (3) |
| C9—N4—N5 | 117.1 (3) | N4—C9—C10 | 120.4 (4) |
| C16—N5—N4 | 120.0 (3) | N4—C9—H9 | 119.8 |
| C16—N5—H5 | 120.0 | C10—C9—H9 | 119.8 |
| N4—N5—H5 | 120.0 | C11—C10—C15 | 118.8 (4) |
| C16—N6—H6A | 120.0 | C11—C10—C9 | 119.6 (4) |
| C16—N6—H6B | 120.0 | C15—C10—C9 | 121.6 (3) |
| H6A—N6—H6B | 120.0 | C12—C11—C10 | 120.1 (4) |
| N1—C1—C2 | 120.0 (4) | C12—C11—H11 | 119.9 |
| N1—C1—H1 | 120.0 | C10—C11—H11 | 119.9 |
| C2—C1—H1 | 120.0 | C13—C12—C11 | 120.1 (4) |
| C3—C2—C7 | 118.8 (4) | C13—C12—H12 | 119.9 |
| C3—C2—C1 | 121.9 (4) | C11—C12—H12 | 119.9 |
| C7—C2—C1 | 119.3 (4) | C14—C13—C12 | 120.5 (4) |
| C2—C3—C4 | 121.0 (4) | C14—C13—H13 | 119.8 |
| C2—C3—H3 | 119.5 | C12—C13—H13 | 119.8 |
| C4—C3—H3 | 119.5 | C13—C14—C15 | 120.4 (5) |
| C3—C4—C5 | 119.8 (5) | C13—C14—H14 | 119.8 |
| C3—C4—H4 | 120.1 | C15—C14—H14 | 119.8 |
| C5—C4—H4 | 120.1 | C14—C15—C10 | 120.1 (4) |
| C6—C5—C4 | 119.7 (4) | C14—C15—H15 | 119.9 |
| C6—C5—H5A | 120.2 | C10—C15—H15 | 119.9 |
| C4—C5—H5A | 120.2 | N6—C16—N5 | 116.4 (3) |
| C5—C6—C7 | 120.4 (4) | N6—C16—S2 | 123.6 (3) |
| C5—C6—H6 | 119.8 | N5—C16—S2 | 120.0 (3) |
| C1—N1—N2—C8 | −177.7 (3) | N1—N2—C8—S1 | −173.6 (2) |
| C9—N4—N5—C16 | −176.7 (3) | N5—N4—C9—C10 | −175.1 (3) |
| N2—N1—C1—C2 | −175.6 (3) | N4—C9—C10—C11 | −174.2 (4) |
| N1—C1—C2—C3 | −4.5 (6) | N4—C9—C10—C15 | 8.9 (6) |
| N1—C1—C2—C7 | 174.5 (4) | C15—C10—C11—C12 | 0.6 (6) |
| C7—C2—C3—C4 | 0.2 (6) | C9—C10—C11—C12 | −176.4 (4) |
| C1—C2—C3—C4 | 179.3 (4) | C10—C11—C12—C13 | 0.8 (7) |
| C2—C3—C4—C5 | 0.0 (6) | C11—C12—C13—C14 | −1.9 (7) |
| C3—C4—C5—C6 | 0.0 (6) | C12—C13—C14—C15 | 1.7 (7) |
| C4—C5—C6—C7 | −0.2 (7) | C13—C14—C15—C10 | −0.2 (7) |
| C5—C6—C7—C2 | 0.4 (6) | C11—C10—C15—C14 | −0.9 (6) |
| C3—C2—C7—C6 | −0.4 (6) | C9—C10—C15—C14 | 176.0 (4) |
| C1—C2—C7—C6 | −179.5 (3) | N4—N5—C16—N6 | 7.6 (5) |
| N1—N2—C8—N3 | 4.7 (5) | N4—N5—C16—S2 | −172.6 (3) |
| H··· | ||||
| N2—H2···S1i | 0.86 | 2.64 | 3.443 (3) | 155 |
| N3—H3A···S1ii | 0.86 | 2.98 | 3.488 (3) | 120 |
| N5—H5···S1ii | 0.86 | 2.61 | 3.441 (3) | 162 |
| N6—H6B···S2iii | 0.86 | 2.51 | 3.368 (3) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯S1i | 0.86 | 2.64 | 3.443 (3) | 155 |
| N3—H3 | 0.86 | 2.98 | 3.488 (3) | 120 |
| N5—H5⋯S1ii | 0.86 | 2.61 | 3.441 (3) | 162 |
| N6—H6 | 0.86 | 2.51 | 3.368 (3) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .