Literature DB >> 21581339

2-r-(4-Chloro-phen-yl)-6-c-phenyl-3,4,5,6-tetra-hydro-2H-thio-pyran-4-one 1-oxide.

A Thiruvalluvar, S Balamurugan, R J Butcher, K Pandiarajan, D Devanathan.   

Abstract

The thio-pyran unit of the title mol-ecule, C(17)H(15)ClO(2)S, is in chair form. A crystallographic mirror plane bis-ects the mol-ecule, passing through the O=S and the opposite C=O atoms of the central ring, with statistical disorder of the Cl atom. The geometry around the S atom is tetra-hedral and the carbonyl C is planar. The 4-chloro-phenyl group at the 2 position and the phenyl ring at the 6 position have equatorial orientations. Inter-molecular C-H⋯O and C-H⋯Cl hydrogen bonds are found in the crystal structure. In addition, there is a short O⋯C inter-molecular contact [2.970 (5) Å].

Entities:  

Year:  2008        PMID: 21581339      PMCID: PMC2959857          DOI: 10.1107/S1600536808037355

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure, see: Thiruvalluvar et al. (2007 ▶). For applications of sulfoxides, see: Contreras et al. (1998 ▶); Hutton et al. (2002 ▶); Okada & Tanaka (2002 ▶). For the conformational analysis of substituted thian-1-oxides, see: Freeman et al. (2001 ▶); Nagao et al. (1995 ▶). For the anti­microbial activity of aliphatic, aromatic and cyclic sulfoxides, see: Ansel et al. (2006 ▶); Ingold et al. (1999 ▶); Rouvier et al. (2004 ▶).

Experimental

Crystal data

C17H15ClO2S M = 318.81 Orthorhombic, a = 11.5195 (5) Å b = 25.7589 (12) Å c = 5.2248 (2) Å V = 1550.35 (12) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 296 (2) K 0.58 × 0.35 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.809, T max = 0.945 33450 measured reflections 1954 independent reflections 1551 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.211 S = 1.20 1954 reflections 106 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: SAINT-NT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037355/hg2443sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037355/hg2443Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15ClO2SDx = 1.366 Mg m3
Mr = 318.81Melting point: 417 K
Orthorhombic, PnmaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 9562 reflections
a = 11.5195 (5) Åθ = 3.0–24.8º
b = 25.7589 (12) ŵ = 0.38 mm1
c = 5.2248 (2) ÅT = 296 (2) K
V = 1550.35 (12) Å3Thick, colourless
Z = 40.58 × 0.35 × 0.15 mm
F000 = 664
Bruker APEXII CCD diffractometer1954 independent reflections
Radiation source: fine-focus sealed tube1551 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.040
Detector resolution: 0 pixels mm-1θmax = 28.3º
T = 296(2) Kθmin = 1.6º
φ and ω scansh = −15→15
Absorption correction: multi-scan(SADABS; Bruker, 2004)k = −34→34
Tmin = 0.809, Tmax = 0.945l = −6→6
33450 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.211  w = 1/[σ2(Fo2) + (0.0825P)2 + 1.5305P] where P = (Fo2 + 2Fc2)/3
S = 1.20(Δ/σ)max = 0.001
1954 reflectionsΔρmax = 0.32 e Å3
106 parametersΔρmin = −0.42 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.0955 (4)0.00160 (11)0.0431 (9)0.1475 (18)0.500
S10.24636 (8)0.250000.27287 (17)0.0434 (3)
O10.3171 (3)0.250000.0330 (5)0.0614 (10)
O40.5597 (3)0.250000.7542 (7)0.0772 (13)
C20.3029 (3)0.19728 (12)0.4726 (5)0.0477 (9)
C30.4354 (3)0.20065 (15)0.4859 (7)0.0621 (13)
C40.4819 (3)0.250000.5959 (8)0.0581 (16)
C110.2583 (3)0.14695 (14)0.3651 (7)0.0593 (11)
C120.1618 (4)0.12411 (19)0.4657 (10)0.0873 (18)
C130.1167 (5)0.0784 (2)0.3692 (16)0.113 (3)
C14A0.1685 (7)0.0557 (2)0.1666 (16)0.112 (3)0.500
C14B0.1685 (7)0.0557 (2)0.1666 (16)0.112 (3)0.500
C150.2634 (7)0.0778 (3)0.0566 (14)0.124 (3)
C160.3087 (5)0.1234 (2)0.1524 (10)0.0940 (19)
H20.271920.201470.646030.0573*
H3A0.463770.171880.588080.0745*
H3B0.466290.196510.314390.0745*
H120.125020.139810.603940.1053*
H130.051390.063400.443210.1358*
H14B0.139100.024760.101570.1344*0.500
H150.298070.06199−0.084110.1492*
H160.373040.138540.074660.1130*
U11U22U33U12U13U23
Cl10.168 (3)0.0895 (18)0.185 (4)−0.0163 (19)−0.060 (3)−0.035 (2)
S10.0328 (5)0.0708 (7)0.0265 (5)0.0000−0.0033 (3)0.0000
O10.0611 (19)0.101 (2)0.0221 (13)0.00000.0046 (13)0.0000
O40.0365 (16)0.138 (3)0.057 (2)0.0000−0.0168 (14)0.0000
C20.0413 (14)0.0715 (18)0.0304 (13)0.0054 (13)−0.0019 (11)0.0014 (12)
C30.0390 (15)0.096 (3)0.0512 (18)0.0139 (16)−0.0103 (13)−0.0018 (17)
C40.0304 (19)0.106 (4)0.038 (2)0.0000−0.0045 (16)0.0000
C110.0562 (18)0.069 (2)0.0527 (18)0.0096 (16)−0.0125 (15)0.0000 (15)
C120.063 (2)0.095 (3)0.104 (4)−0.007 (2)0.009 (2)−0.018 (3)
C130.092 (4)0.097 (4)0.150 (6)−0.019 (3)−0.005 (4)−0.004 (4)
C14A0.118 (5)0.080 (3)0.138 (5)−0.001 (3)−0.048 (4)−0.017 (3)
C14B0.118 (5)0.080 (3)0.138 (5)−0.001 (3)−0.048 (4)−0.017 (3)
C150.156 (6)0.099 (4)0.118 (5)0.008 (4)−0.006 (4)−0.045 (4)
C160.111 (4)0.094 (3)0.077 (3)−0.001 (3)0.013 (3)−0.025 (3)
Cl1—C14A1.751 (7)C13—C14B1.349 (11)
Cl1—C14B1.751 (7)C14A—C151.360 (11)
Cl1—H14B0.8400C14B—C151.360 (11)
S1—C21.832 (3)C15—C161.379 (9)
S1—C2i1.832 (3)C2—H20.9800
S1—O11.495 (3)C3—H3A0.9700
O4—C41.220 (5)C3—H3B0.9700
C2—C31.530 (5)C12—H120.9300
C2—C111.503 (5)C13—H130.9300
C3—C41.494 (4)C14A—H14B0.9300
C11—C121.363 (6)C14B—H14B0.9300
C11—C161.393 (6)C15—H150.9300
C12—C131.382 (8)C16—H160.9300
C13—C14A1.349 (11)
Cl1···C15ii3.645 (9)C2···O1xiv3.232 (4)
Cl1···H15iii2.8200C2···O1x3.232 (4)
S1···O4iv3.494 (4)C3···O1xiv3.412 (4)
S1···O4v3.276 (4)C3···O1x3.412 (4)
S1···C4iv3.605 (4)C4···S1xii3.605 (4)
S1···O4vi3.494 (4)C4···O1xiv2.970 (5)
S1···O4vii3.276 (4)C4···S1xv3.605 (4)
S1···C4vi3.605 (4)C4···O1x2.970 (5)
O1···O4viii3.152 (5)C12···C15xiv3.511 (9)
O1···C2viii3.232 (4)C15···C12viii3.511 (9)
O1···C3viii3.412 (4)C15···Cl1iii3.645 (9)
O1···C4viii2.970 (5)C16···O13.322 (5)
O1···C163.322 (5)C3···H162.7700
O1···C2ix3.232 (4)C16···H3B2.7500
O1···C3ix3.412 (4)H2···O1xiv2.4300
O1···O4ix3.152 (5)H2···H122.3300
O1···C16i3.322 (5)H2···O4v2.7900
O1···C4ix2.970 (5)H2···O4vii2.7900
O4···O1x3.152 (5)H2···O1x2.4300
O4···S1xi3.276 (4)H2···H2i2.5000
O4···S1xii3.494 (4)H3A···H12xi2.5900
O4···S1xiii3.276 (4)H3B···O12.6500
O4···O1xiv3.152 (5)H3B···C162.7500
O4···S1xv3.494 (4)H3B···H162.2300
O1···H3Bi2.6500H12···H22.3300
O1···H2viii2.4300H12···H3Avii2.5900
O1···H2ix2.4300H15···Cl1ii2.8200
O1···H3B2.6500H16···C32.7700
O4···H2xiii2.7900H16···H3B2.2300
O4···H2xi2.7900
C14A—Cl1—H14B8.00C11—C16—C15120.2 (5)
C14B—Cl1—H14B8.00S1—C2—H2108.00
C2—S1—C2i95.66 (14)C3—C2—H2108.00
O1—S1—C2106.48 (13)C11—C2—H2108.00
O1—S1—C2i106.48 (13)C2—C3—H3A109.00
C3—C2—C11114.0 (3)C2—C3—H3B109.00
S1—C2—C3109.8 (2)C4—C3—H3A109.00
S1—C2—C11107.8 (2)C4—C3—H3B108.00
C2—C3—C4115.0 (3)H3A—C3—H3B108.00
C3—C4—C3i116.6 (3)C11—C12—H12119.00
O4—C4—C3121.62 (19)C13—C12—H12119.00
O4—C4—C3i121.62 (19)C12—C13—H13120.00
C12—C11—C16117.4 (4)C14A—C13—H13120.00
C2—C11—C16122.1 (4)C14B—C13—H13120.00
C2—C11—C12120.5 (3)Cl1—C14A—H14B8.00
C11—C12—C13122.2 (5)C13—C14A—H14B120.00
C12—C13—C14A119.3 (6)C15—C14A—H14B120.00
C12—C13—C14B119.3 (6)Cl1—C14B—H14B8.00
Cl1—C14A—C15124.3 (6)C13—C14B—H14B120.00
Cl1—C14A—C13115.0 (6)C15—C14B—H14B120.00
C13—C14A—C15120.4 (6)C14A—C15—H15120.00
Cl1—C14B—C15124.3 (6)C14B—C15—H15120.00
C13—C14B—C15120.4 (6)C16—C15—H15120.00
Cl1—C14B—C13115.0 (6)C11—C16—H16120.00
C14A—C15—C16120.5 (7)C15—C16—H16120.00
C14B—C15—C16120.5 (7)
O1—S1—C2—C348.2 (2)C2—C11—C16—C15−178.6 (5)
O1—S1—C2—C11−76.5 (2)C12—C11—C16—C15−2.2 (7)
C2i—S1—C2—C3−60.9 (2)C11—C12—C13—C14A−0.9 (9)
C2i—S1—C2—C11174.5 (2)C11—C12—C13—C14B−0.9 (9)
S1—C2—C3—C459.9 (3)C12—C13—C14A—Cl1−174.1 (5)
C11—C2—C3—C4−179.1 (3)C12—C13—C14A—C15−0.7 (11)
S1—C2—C11—C12−96.7 (4)C12—C13—C14B—Cl1−174.1 (5)
S1—C2—C11—C1679.6 (4)C12—C13—C14B—C15−0.7 (11)
C3—C2—C11—C12141.3 (4)Cl1—C14A—C15—C16173.5 (6)
C3—C2—C11—C16−42.5 (5)C13—C14A—C15—C160.7 (11)
C2—C3—C4—O4134.6 (4)Cl1—C14B—C15—C16173.5 (6)
C2—C3—C4—C3i−50.5 (4)C13—C14B—C15—C160.7 (11)
C2—C11—C12—C13178.7 (5)C14A—C15—C16—C110.8 (10)
C16—C11—C12—C132.3 (7)C14B—C15—C16—C110.8 (10)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1xiv0.982.433.232 (4)138
C15—H15···Cl1ii0.932.823.745 (9)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.982.433.232 (4)138
C15—H15⋯Cl1ii0.932.823.745 (9)170

Symmetry codes: (i) ; (ii) .

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