Literature DB >> 21581322

3-(2,4-Dibromo-anilino)-2,2-dimethyl-2,3-dihydro-naphtho[1,2-b]furan-4,5-dione: a new substituted aryl-amino nor-β-lapachone derivative.

Eufrânio N da Silva, Carlos A De Simone, Marília O F Goulart, Carlos K Z Andrade, Raphael S F Silva, Antonio V Pinto.   

Abstract

The title compound, C(20)H(15)Br(2)NO(3), shows the furan ring to adopt a half-chair conformation and the two ring systems to be approximately perpendicular [dihedral angle = 71.0 (2)°]. In the crystal structure, inter-molecular C-H⋯O contacts link the mol-ecules.

Entities:  

Year:  2008        PMID: 21581322      PMCID: PMC2959894          DOI: 10.1107/S1600536808034545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Hillard et al. (2008 ▶); Pinto et al., (1997 ▶); Dos Santos et al. (2001 ▶); Lima et al. (2004 ▶). For related structures and biological activity, see: da Silva Júnior et al. (2007 ▶, 2008 ▶); Lima et al. (2002 ▶). For the synthesis, see: da Silva Júnior et al. (2007 ▶, 2008 ▶). For geometric analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H15Br2NO3 M = 477.15 Triclinic, a = 8.1430 (3) Å b = 11.2584 (4) Å c = 11.4742 (5) Å α = 112.073 (2)° β = 95.546 (2)° γ = 108.696 (2)° V = 894.70 (6) Å3 Z = 2 Mo Kα radiation μ = 4.55 mm−1 T = 293 (2) K 0.31 × 0.28 × 0.16 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.272, T max = 0.490 9784 measured reflections 4099 independent reflections 3610 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.139 S = 1.09 4070 reflections 235 parameters H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −1.49 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034545/tk2311sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034545/tk2311Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15Br2NO3Z = 2
Mr = 477.15F000 = 472
Triclinic, P1Dx = 1.771 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.1430 (3) ÅCell parameters from 7882 reflections
b = 11.2584 (4) Åθ = 1.0–27.5º
c = 11.4742 (5) ŵ = 4.55 mm1
α = 112.073 (2)ºT = 293 (2) K
β = 95.546 (2)ºPlate, colorless
γ = 108.696 (2)º0.31 × 0.28 × 0.16 mm
V = 894.70 (6) Å3
Nonius KappaCCD diffractometer4099 independent reflections
Radiation source: Enraf Nonius FR5903610 reflections with I > 2σ(I)
Monochromator: horizonally mounted graphite crystalRint = 0.032
Detector resolution: 9 pixels mm-1θmax = 27.5º
CCD rotation images, thick slices scansθmin = 2.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −10→9
Tmin = 0.272, Tmax = 0.490k = −14→14
9784 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.139  w = 1/[σ2(Fo2) + (0.0642P)2 + 1.7472P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
4070 reflectionsΔρmax = 0.59 e Å3
235 parametersΔρmin = −1.49 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.13493 (6)0.15969 (6)0.15092 (5)0.06302 (18)
Br20.61904 (6)0.13670 (4)−0.16856 (4)0.04728 (15)
O10.5871 (4)0.4358 (3)0.6646 (3)0.0405 (6)
O20.2827 (4)−0.0404 (3)0.4343 (3)0.0475 (7)
O30.0912 (5)−0.0405 (3)0.6162 (4)0.0647 (10)
N10.4572 (4)0.2348 (4)0.3578 (3)0.0388 (7)
H10.35850.24600.36540.047*
C20.6940 (5)0.3902 (4)0.5704 (4)0.0376 (8)
C30.5652 (5)0.2412 (4)0.4710 (4)0.0343 (7)
H30.62910.17870.44520.041*
C3A0.4399 (5)0.2026 (4)0.5504 (3)0.0335 (7)
C40.3082 (5)0.0695 (4)0.5251 (4)0.0355 (7)
C50.1911 (5)0.0697 (4)0.6241 (4)0.0396 (8)
C5A0.2076 (5)0.2057 (4)0.7271 (4)0.0356 (7)
C60.0916 (5)0.2100 (4)0.8081 (4)0.0430 (9)
H60.00050.12840.79670.052*
C70.1114 (6)0.3356 (5)0.9059 (4)0.0487 (10)
H70.03480.33790.96100.058*
C80.2437 (7)0.4573 (5)0.9222 (5)0.0503 (10)
H80.25600.54130.98820.060*
C90.3589 (6)0.4550 (4)0.8403 (4)0.0449 (9)
H90.44800.53740.85140.054*
C9A0.3410 (5)0.3304 (4)0.7427 (4)0.0347 (7)
C9B0.4547 (5)0.3204 (4)0.6524 (4)0.0339 (7)
C1'0.4990 (5)0.2127 (4)0.2403 (4)0.0336 (7)
C2'0.3688 (5)0.1795 (4)0.1324 (4)0.0349 (7)
C3'0.4010 (5)0.1562 (4)0.0115 (4)0.0384 (8)
H3'0.31010.1327−0.05860.046*
C4'0.5725 (5)0.1686 (4)−0.0031 (4)0.0370 (8)
C5'0.7048 (6)0.2006 (5)0.1004 (4)0.0428 (9)
H5'0.81890.20810.08980.051*
C6'0.6691 (5)0.2220 (4)0.2212 (4)0.0406 (8)
H6'0.75970.24290.29040.049*
C1''0.8530 (6)0.3854 (5)0.6478 (5)0.0509 (10)
H1A0.81080.31590.67910.076*
H1B0.91750.47440.72010.076*
H1C0.93080.36280.59300.076*
C2''0.7497 (6)0.4983 (4)0.5182 (5)0.0466 (9)
H2A0.64540.49710.47030.070*
H2B0.82680.47770.46210.070*
H2C0.81240.58860.58910.070*
U11U22U33U12U13U23
Br10.0428 (3)0.0937 (4)0.0536 (3)0.0282 (3)0.0146 (2)0.0306 (3)
Br20.0576 (3)0.0534 (3)0.0380 (2)0.0228 (2)0.02256 (19)0.02340 (19)
O10.0463 (15)0.0328 (12)0.0396 (14)0.0101 (11)0.0189 (12)0.0153 (11)
O20.0541 (17)0.0357 (14)0.0432 (16)0.0129 (12)0.0138 (13)0.0105 (12)
O30.075 (2)0.0385 (16)0.074 (2)0.0084 (15)0.0367 (19)0.0246 (16)
N10.0419 (17)0.0533 (19)0.0326 (16)0.0262 (15)0.0153 (13)0.0222 (14)
C20.0393 (19)0.0401 (19)0.0381 (19)0.0139 (15)0.0151 (16)0.0217 (16)
C30.0386 (18)0.0405 (18)0.0338 (18)0.0199 (15)0.0151 (15)0.0209 (15)
C3A0.0394 (18)0.0368 (17)0.0285 (16)0.0143 (15)0.0105 (14)0.0184 (14)
C40.0398 (19)0.0353 (17)0.0323 (18)0.0144 (15)0.0083 (14)0.0157 (14)
C50.0404 (19)0.0386 (19)0.041 (2)0.0121 (15)0.0120 (16)0.0207 (16)
C5A0.0364 (18)0.0389 (18)0.0357 (18)0.0140 (15)0.0106 (15)0.0204 (15)
C60.0378 (19)0.050 (2)0.048 (2)0.0166 (17)0.0189 (17)0.0268 (18)
C70.051 (2)0.062 (3)0.045 (2)0.028 (2)0.0240 (19)0.027 (2)
C80.061 (3)0.049 (2)0.042 (2)0.025 (2)0.022 (2)0.0159 (18)
C90.054 (2)0.0382 (19)0.041 (2)0.0149 (17)0.0172 (18)0.0162 (17)
C9A0.0393 (18)0.0355 (17)0.0302 (17)0.0124 (14)0.0101 (14)0.0165 (14)
C9B0.0392 (18)0.0356 (17)0.0329 (17)0.0141 (14)0.0123 (14)0.0203 (14)
C1'0.0389 (18)0.0373 (17)0.0314 (17)0.0177 (15)0.0121 (14)0.0185 (14)
C2'0.0329 (17)0.0388 (18)0.0382 (19)0.0162 (14)0.0122 (14)0.0192 (15)
C3'0.043 (2)0.043 (2)0.0331 (18)0.0185 (16)0.0097 (15)0.0195 (16)
C4'0.046 (2)0.0383 (18)0.0341 (18)0.0186 (16)0.0189 (16)0.0199 (15)
C5'0.041 (2)0.055 (2)0.044 (2)0.0241 (18)0.0193 (17)0.0271 (19)
C6'0.0374 (19)0.055 (2)0.0371 (19)0.0220 (17)0.0111 (15)0.0235 (17)
C1''0.042 (2)0.054 (2)0.055 (3)0.0127 (18)0.0059 (19)0.029 (2)
C2''0.052 (2)0.044 (2)0.056 (3)0.0180 (18)0.027 (2)0.0305 (19)
Br1—C2'1.887 (4)C7—C81.377 (7)
Br2—C4'1.895 (4)C7—H70.9300
O1—C9B1.344 (4)C8—C91.389 (6)
O1—C21.497 (5)C8—H80.9300
O2—C41.219 (5)C9—C9A1.379 (6)
O3—C51.210 (5)C9—H90.9300
N1—C1'1.374 (5)C9A—C9B1.451 (5)
N1—C31.461 (5)C1'—C2'1.394 (5)
N1—H10.8600C1'—C6'1.400 (5)
C2—C2''1.514 (5)C2'—C3'1.379 (5)
C2—C1''1.525 (6)C3'—C4'1.392 (5)
C2—C31.556 (5)C3'—H3'0.9300
C3—C3A1.501 (5)C4'—C5'1.372 (6)
C3—H30.9800C5'—C6'1.391 (6)
C3A—C9B1.360 (5)C5'—H5'0.9300
C3A—C41.436 (5)C6'—H6'0.9300
C4—C51.552 (5)C1''—H1A0.9600
C5—C5A1.496 (5)C1''—H1B0.9600
C5A—C61.387 (5)C1''—H1C0.9600
C5A—C9A1.406 (5)C2''—H2A0.9600
C6—C71.382 (6)C2''—H2B0.9600
C6—H60.9300C2''—H2C0.9600
C9B—O1—C2107.1 (3)C9A—C9—H9120.0
C1'—N1—C3125.9 (3)C8—C9—H9120.0
C1'—N1—H1117.0C9—C9A—C5A119.9 (4)
C3—N1—H1117.0C9—C9A—C9B122.9 (3)
O1—C2—C2''106.1 (3)C5A—C9A—C9B117.2 (3)
O1—C2—C1''106.1 (3)O1—C9B—C3A114.0 (3)
C2''—C2—C1''112.7 (3)O1—C9B—C9A119.7 (3)
O1—C2—C3104.0 (3)C3A—C9B—C9A126.2 (3)
C2''—C2—C3116.4 (3)N1—C1'—C2'119.9 (3)
C1''—C2—C3110.5 (3)N1—C1'—C6'123.5 (3)
N1—C3—C3A106.9 (3)C2'—C1'—C6'116.6 (3)
N1—C3—C2114.7 (3)C3'—C2'—C1'123.2 (3)
C3A—C3—C2100.7 (3)C3'—C2'—Br1118.3 (3)
N1—C3—H3111.3C1'—C2'—Br1118.5 (3)
C3A—C3—H3111.3C2'—C3'—C4'118.5 (3)
C2—C3—H3111.3C2'—C3'—H3'120.8
C9B—C3A—C4121.3 (3)C4'—C3'—H3'120.8
C9B—C3A—C3108.9 (3)C5'—C4'—C3'120.3 (3)
C4—C3A—C3129.6 (3)C5'—C4'—Br2120.6 (3)
O2—C4—C3A125.6 (4)C3'—C4'—Br2119.0 (3)
O2—C4—C5118.8 (3)C4'—C5'—C6'120.3 (4)
C3A—C4—C5115.6 (3)C4'—C5'—H5'119.8
O3—C5—C5A122.3 (4)C6'—C5'—H5'119.8
O3—C5—C4118.7 (4)C5'—C6'—C1'121.0 (4)
C5A—C5—C4119.0 (3)C5'—C6'—H6'119.5
C6—C5A—C9A119.5 (4)C1'—C6'—H6'119.5
C6—C5A—C5120.3 (3)C2—C1''—H1A109.5
C9A—C5A—C5120.3 (3)C2—C1''—H1B109.5
C7—C6—C5A119.9 (4)H1A—C1''—H1B109.5
C7—C6—H6120.0C2—C1''—H1C109.5
C5A—C6—H6120.0H1A—C1''—H1C109.5
C8—C7—C6120.5 (4)H1B—C1''—H1C109.5
C8—C7—H7119.7C2—C2''—H2A109.5
C6—C7—H7119.7C2—C2''—H2B109.5
C7—C8—C9120.2 (4)H2A—C2''—H2B109.5
C7—C8—H8119.9C2—C2''—H2C109.5
C9—C8—H8119.9H2A—C2''—H2C109.5
C9A—C9—C8119.9 (4)H2B—C2''—H2C109.5
C9B—O1—C2—C2''143.2 (3)C8—C9—C9A—C5A−0.8 (6)
C9B—O1—C2—C1''−96.7 (3)C8—C9—C9A—C9B179.1 (4)
C9B—O1—C2—C319.9 (4)C6—C5A—C9A—C92.0 (6)
C1'—N1—C3—C3A−154.9 (4)C5—C5A—C9A—C9−178.1 (4)
C1'—N1—C3—C294.4 (4)C6—C5A—C9A—C9B−177.9 (4)
O1—C2—C3—N192.0 (3)C5—C5A—C9A—C9B2.1 (5)
C2''—C2—C3—N1−24.3 (5)C2—O1—C9B—C3A−8.8 (4)
C1''—C2—C3—N1−154.5 (3)C2—O1—C9B—C9A172.6 (3)
O1—C2—C3—C3A−22.4 (3)C4—C3A—C9B—O1178.5 (3)
C2''—C2—C3—C3A−138.7 (3)C3—C3A—C9B—O1−6.9 (4)
C1''—C2—C3—C3A91.1 (4)C4—C3A—C9B—C9A−3.0 (6)
N1—C3—C3A—C9B−101.7 (4)C3—C3A—C9B—C9A171.6 (3)
C2—C3—C3A—C9B18.4 (4)C9—C9A—C9B—O11.7 (6)
N1—C3—C3A—C472.3 (5)C5A—C9A—C9B—O1−178.5 (3)
C2—C3—C3A—C4−167.6 (4)C9—C9A—C9B—C3A−176.7 (4)
C9B—C3A—C4—O2178.0 (4)C5A—C9A—C9B—C3A3.1 (6)
C3—C3A—C4—O24.7 (7)C3—N1—C1'—C2'166.3 (3)
C9B—C3A—C4—C5−2.1 (5)C3—N1—C1'—C6'−14.0 (6)
C3—C3A—C4—C5−175.4 (3)N1—C1'—C2'—C3'179.8 (3)
O2—C4—C5—O37.7 (6)C6'—C1'—C2'—C3'0.1 (5)
C3A—C4—C5—O3−172.1 (4)N1—C1'—C2'—Br1−2.3 (5)
O2—C4—C5—C5A−173.3 (4)C6'—C1'—C2'—Br1178.0 (3)
C3A—C4—C5—C5A6.8 (5)C1'—C2'—C3'—C4'−1.1 (6)
O3—C5—C5A—C6−8.0 (6)Br1—C2'—C3'—C4'−179.0 (3)
C4—C5—C5A—C6173.1 (4)C2'—C3'—C4'—C5'1.3 (6)
O3—C5—C5A—C9A172.0 (4)C2'—C3'—C4'—Br2179.9 (3)
C4—C5—C5A—C9A−6.9 (5)C3'—C4'—C5'—C6'−0.4 (6)
C9A—C5A—C6—C7−2.1 (6)Br2—C4'—C5'—C6'−179.1 (3)
C5—C5A—C6—C7177.9 (4)C4'—C5'—C6'—C1'−0.6 (6)
C5A—C6—C7—C81.2 (7)N1—C1'—C6'—C5'−179.0 (4)
C6—C7—C8—C90.0 (7)C2'—C1'—C6'—C5'0.7 (6)
C7—C8—C9—C9A−0.1 (7)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.982.643.347 (6)129
C1''—H1A···O2i0.962.673.389 (6)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.982.643.347 (6)129
C1′′—H1A⋯O2i0.962.673.389 (6)132

Symmetry code: (i) .

  7 in total

1.  Molluscicidal and trypanocidal activities of lapachol derivatives.

Authors:  A F Santos; P A Ferraz; F C de Abreu; E Chiari; M O Goulart; A E Sant'Ana
Journal:  Planta Med       Date:  2001-02       Impact factor: 3.352

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Electrochemical parameters and techniques in drug development, with an emphasis on quinones and related compounds.

Authors:  Elizabeth Anne Hillard; Fabiane Caxico de Abreu; Danielle Cristhina Melo Ferreira; Gérard Jaouen; Marília Oliveira Fonseca Goulart; Christian Amatore
Journal:  Chem Commun (Camb)       Date:  2008-04-10       Impact factor: 6.222

4.  Trypanocidal activity of synthetic heterocyclic derivatives of active quinones from Tabebuia sp.

Authors:  A V Pinto; C N Pinto; M do C Pinto; R S Rita; C A Pezzella; S L de Castro
Journal:  Arzneimittelforschung       Date:  1997-01

5.  Antileishmanial activity of lapachol analogues.

Authors:  Nadja M F Lima; Clariane S Correia; Leonor L Leon; Gérzia M C Machado; Maria de Fátima Madeira; Antônio Euzébio G Santana; Marília O F Goulart
Journal:  Mem Inst Oswaldo Cruz       Date:  2005-01-12       Impact factor: 2.743

6.  Synthesis and anti-Trypanosoma cruzi activity of derivatives from nor-lapachones and lapachones.

Authors:  Eufrânio N da Silva Júnior; Maria Cecília B V de Souza; Michelle C Fernandes; Rubem F S Menna-Barreto; Maria do Carmo F R Pinto; Francisco de Assis Lopes; Carlos Alberto de Simone; Carlos Kleber Z Andrade; Antônio V Pinto; Vitor F Ferreira; Solange L de Castro
Journal:  Bioorg Med Chem       Date:  2008-03-16       Impact factor: 3.641

7.  Synthesis and potent antitumor activity of new arylamino derivatives of nor-beta-lapachone and nor-alpha-lapachone.

Authors:  Eufrânio N da Silva Júnior; Maria Cecília B V de Souza; Antônio V Pinto; Maria do Carmo F R Pinto; Marilia O F Goulart; Francisco W A Barros; Claudia Pessoa; Letícia V Costa-Lotufo; Raquel C Montenegro; Manoel O de Moraes; Vitor F Ferreira
Journal:  Bioorg Med Chem       Date:  2007-08-22       Impact factor: 3.461

  7 in total

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