Literature DB >> 21581203

Di-μ(2)-chlorido-bis-[aqua-(2,2'-bipyridine-4,4'-dicarboxylic acid-κN,N')(nitrato-κO)copper(II)].

Ke-Fei Han1, Hui-Yong Wu, Zhong-Ming Wang, Hong-You Guo.   

Abstract

In the title compound, [Cu(2)Cl(2)(NO(3))(2)(C(12)H(8)N(2)O(4))(2)(H(2)O)(2)], which consists of a chloride-bridged Cu(II) dimer, the Cu atom is in a distorted octa-hedral environment defined by two N atoms from the 2,2'-bipyridine-4,4'-dicarboxylic acid ligand (H(2)bpdca), two bridging chlorido ligands, and two O atoms from an equatorial water mol-ecule and an axial nitrate anion, respectively. The two halves of the dimeric unit are related by an inversion centre at the midpoint between the two Cu atoms. Both carboxylic acid groups in the H(2)bpdca ligand remain protonated, as confirmed by the two sets of C-O bond lengths. The dinuclear mol-ecules are linked into a three-dimensional network via inter-molecular hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581203      PMCID: PMC2959964          DOI: 10.1107/S1600536808028511

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Aitipamula et al. (2002 ▶); Batten & Robson (1998 ▶); Desiraju (2002 ▶); Etter (1990 ▶); Han et al. (2007 ▶); Holliday & Mirkin (2001 ▶); Kitagawa et al. (2004 ▶); Kumar et al. (2006 ▶); Liu et al. (2002 ▶); Moulton & Zaworotko (2001 ▶); Ockwig et al. (2005 ▶); Schareina et al. (2001a ▶,b ▶); Tynan et al. (2004 ▶, 2005 ▶); Wu (2006 ▶); Wu et al. (2006 ▶).

Experimental

Crystal data

[Cu2Cl2(NO3)2(C12H8N2O4)2(H2O)2] M = 846.46 Triclinic, a = 6.9500 (7) Å b = 8.1490 (7) Å c = 13.5480 (10) Å α = 92.315 (2)° β = 103.384 (4)° γ = 98.556 (3)° V = 735.91 (11) Å3 Z = 1 Mo Kα radiation μ = 1.72 mm−1 T = 295 (2) K 0.30 × 0.24 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID IP area-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.627, T max = 0.725 5180 measured reflections 3301 independent reflections 3116 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.106 S = 1.11 3301 reflections 238 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.72 e Å−3 Data collection: RAPID-AUTO (Rigaku 2001 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808028511/rt2020sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028511/rt2020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2Cl2(NO3)2(C12H8N2O4)2(H2O)2]Z = 1
Mr = 846.46F000 = 426
Triclinic, P1Dx = 1.91 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.9500 (7) ÅCell parameters from 6664 reflections
b = 8.1490 (7) Åθ = 1.6–27.5º
c = 13.5480 (10) ŵ = 1.72 mm1
α = 92.315 (2)ºT = 295 (2) K
β = 103.384 (4)ºBlock, blue
γ = 98.556 (3)º0.30 × 0.24 × 0.20 mm
V = 735.91 (11) Å3
Rigaku R-AXIS RAPID IP area-detector diffractometerRint = 0.021
ω oscillation scansθmax = 27.5º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)θmin = 1.6º
Tmin = 0.627, Tmax = 0.725h = −9→9
5180 measured reflectionsk = −10→10
3301 independent reflectionsl = −17→17
3116 reflections with I > 2σ(I)
Refinement on F23 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.035  w = 1/[σ2(Fo2) + (0.0591P)2 + 0.6991P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.106(Δ/σ)max < 0.001
S = 1.11Δρmax = 0.67 e Å3
3301 reflectionsΔρmin = −0.72 e Å3
238 parametersExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O60.1325 (5)0.1681 (3)0.1741 (2)0.0691 (8)
Cu10.37742 (4)0.02464 (4)0.10473 (2)0.02764 (12)
Cl10.30801 (9)0.10642 (8)−0.05463 (4)0.03186 (15)
N10.4725 (3)−0.0507 (2)0.24369 (15)0.0250 (4)
N20.5689 (3)0.2299 (3)0.16874 (16)0.0274 (4)
N30.1423 (4)0.3230 (4)0.1725 (2)0.0465 (6)
O10.1477 (3)−0.1609 (3)0.07198 (16)0.0380 (4)
O20.9538 (3)0.7885 (2)0.28428 (16)0.0396 (5)
O31.0190 (4)0.6606 (3)0.42733 (17)0.0536 (6)
O40.8547 (3)−0.0671 (3)0.60227 (16)0.0454 (5)
O50.6480 (3)−0.3083 (2)0.57019 (15)0.0395 (5)
O70.2266 (4)0.4133 (3)0.25273 (16)0.0443 (5)
O80.0715 (7)0.3831 (6)0.0958 (2)0.1053 (15)
C10.6048 (5)0.3690 (3)0.1234 (2)0.0368 (6)
H10.5460.3710.05450.044*
C20.7267 (5)0.5113 (3)0.1753 (2)0.0369 (6)
H20.75050.6070.14190.044*
C30.8119 (4)0.5075 (3)0.27753 (19)0.0269 (5)
C40.7771 (4)0.3630 (3)0.32546 (18)0.0264 (5)
H40.83470.35850.39430.032*
C50.6542 (3)0.2250 (3)0.26844 (17)0.0238 (4)
C60.6057 (3)0.0642 (3)0.31031 (18)0.0241 (4)
C70.6879 (4)0.0294 (3)0.40842 (18)0.0256 (5)
H70.77930.10960.45320.031*
C80.6319 (4)−0.1272 (3)0.43924 (18)0.0247 (4)
C90.4958 (4)−0.2451 (3)0.37088 (19)0.0289 (5)
H90.4564−0.35070.39030.035*
C100.4201 (4)−0.2024 (3)0.27330 (19)0.0287 (5)
H100.3303−0.28140.22690.034*
C110.9409 (4)0.6586 (3)0.3387 (2)0.0298 (5)
C120.7236 (4)−0.1641 (3)0.54572 (19)0.0276 (5)
H1WA0.050 (4)−0.139 (5)0.090 (3)0.041*
H1WB0.113 (5)−0.204 (4)0.0152 (17)0.041*
H2A1.017 (5)0.861 (5)0.322 (3)0.041*
H5A0.694 (5)−0.333 (4)0.6256 (17)0.041*
U11U22U33U12U13U23
O60.0764 (18)0.0465 (14)0.083 (2)−0.0156 (12)0.0381 (16)−0.0248 (14)
Cu10.03280 (18)0.02355 (17)0.02061 (17)−0.00261 (12)−0.00096 (12)0.00132 (11)
Cl10.0367 (3)0.0334 (3)0.0226 (3)0.0066 (2)0.0004 (2)0.0039 (2)
N10.0277 (9)0.0206 (9)0.0236 (9)−0.0004 (7)0.0029 (7)0.0005 (7)
N20.0319 (10)0.0229 (9)0.0229 (10)−0.0007 (8)0.0013 (8)0.0011 (8)
N30.0386 (13)0.0620 (18)0.0352 (13)0.0166 (12)−0.0014 (10)−0.0100 (12)
O10.0364 (10)0.0346 (10)0.0334 (10)−0.0049 (8)−0.0035 (8)−0.0017 (8)
O20.0515 (12)0.0230 (9)0.0329 (10)−0.0102 (8)−0.0024 (9)0.0017 (8)
O30.0758 (16)0.0345 (11)0.0312 (11)−0.0132 (10)−0.0119 (10)0.0039 (9)
O40.0549 (13)0.0326 (10)0.0323 (10)−0.0135 (9)−0.0098 (9)0.0055 (8)
O50.0518 (12)0.0285 (9)0.0276 (10)−0.0093 (8)−0.0032 (8)0.0098 (8)
O70.0621 (13)0.0303 (10)0.0298 (10)0.0002 (9)−0.0052 (9)−0.0007 (8)
O80.145 (3)0.132 (3)0.0376 (15)0.086 (3)−0.0179 (18)−0.0050 (18)
C10.0498 (15)0.0273 (12)0.0242 (12)−0.0046 (11)−0.0033 (11)0.0058 (10)
C20.0501 (16)0.0250 (12)0.0279 (13)−0.0043 (11)−0.0001 (11)0.0078 (10)
C30.0278 (11)0.0219 (11)0.0267 (12)−0.0015 (9)0.0018 (9)0.0004 (9)
C40.0298 (11)0.0229 (11)0.0219 (11)−0.0017 (9)0.0002 (9)0.0032 (9)
C50.0269 (10)0.0211 (10)0.0216 (11)0.0005 (8)0.0042 (8)0.0031 (8)
C60.0254 (10)0.0204 (10)0.0245 (11)−0.0006 (8)0.0049 (9)0.0002 (8)
C70.0290 (11)0.0202 (10)0.0238 (11)−0.0020 (8)0.0023 (9)0.0008 (8)
C80.0286 (11)0.0207 (10)0.0225 (11)−0.0001 (8)0.0038 (9)0.0014 (8)
C90.0327 (12)0.0205 (11)0.0293 (12)−0.0031 (9)0.0036 (9)0.0030 (9)
C100.0316 (12)0.0213 (11)0.0278 (12)−0.0038 (9)0.0020 (9)0.0000 (9)
C110.0319 (12)0.0235 (11)0.0294 (12)−0.0027 (9)0.0027 (10)0.0005 (9)
C120.0327 (12)0.0216 (11)0.0256 (11)0.0002 (9)0.0034 (9)0.0034 (9)
O6—N31.255 (4)O5—C121.302 (3)
O6—Cu12.528 (3)O5—H5A0.790 (18)
Cu1—O11.982 (2)C1—C21.387 (4)
Cu1—N11.999 (2)C1—H10.93
Cu1—N22.002 (2)C2—C31.378 (4)
Cu1—Cl12.2511 (7)C2—H20.93
Cu1—Cl1i2.7757 (8)C3—C41.384 (3)
N1—C101.340 (3)C3—C111.501 (3)
N1—C61.355 (3)C4—C51.389 (3)
N2—C11.330 (3)C4—H40.93
N2—C51.348 (3)C5—C61.473 (3)
N3—O81.199 (4)C6—C71.379 (3)
N3—O71.256 (3)C7—C81.387 (3)
O1—H1WA0.819 (18)C7—H70.93
O1—H1WB0.802 (18)C8—C91.389 (3)
O2—C111.318 (3)C8—C121.498 (3)
O2—H2A0.77 (4)C9—C101.384 (4)
O3—C111.196 (3)C9—H90.93
O4—C121.207 (3)C10—H100.93
N3—O6—Cu1119.8 (2)C2—C3—C4119.9 (2)
O1—Cu1—N191.33 (8)C2—C3—C11121.1 (2)
O1—Cu1—N2163.29 (9)C4—C3—C11119.0 (2)
N1—Cu1—N281.03 (8)C3—C4—C5118.5 (2)
O1—Cu1—Cl192.53 (6)C3—C4—H4120.8
N1—Cu1—Cl1172.93 (6)C5—C4—H4120.8
N2—Cu1—Cl196.72 (6)N2—C5—C4121.5 (2)
O1—Cu1—O682.22 (9)N2—C5—C6114.76 (19)
N1—Cu1—O687.84 (10)C4—C5—C6123.8 (2)
N2—Cu1—O682.67 (9)N1—C6—C7121.6 (2)
Cl1—Cu1—O698.54 (8)N1—C6—C5114.4 (2)
C10—N1—C6119.4 (2)C7—C6—C5124.0 (2)
C10—N1—Cu1125.70 (16)C6—C7—C8118.9 (2)
C6—N1—Cu1114.87 (16)C6—C7—H7120.5
C1—N2—C5119.5 (2)C8—C7—H7120.5
C1—N2—Cu1125.61 (17)C7—C8—C9119.5 (2)
C5—N2—Cu1114.73 (16)C7—C8—C12118.5 (2)
O8—N3—O6120.4 (3)C9—C8—C12122.0 (2)
O8—N3—O7120.8 (3)C10—C9—C8118.6 (2)
O6—N3—O7118.8 (3)C10—C9—H9120.7
Cu1—O1—H1WA113 (3)C8—C9—H9120.7
Cu1—O1—H1WB118 (3)N1—C10—C9121.9 (2)
H1WA—O1—H1WB110 (4)N1—C10—H10119
C11—O2—H2A106 (3)C9—C10—H10119
C12—O5—H5A116 (3)O3—C11—O2124.3 (2)
N2—C1—C2122.3 (2)O3—C11—C3123.3 (2)
N2—C1—H1118.9O2—C11—C3112.3 (2)
C2—C1—H1118.9O4—C12—O5124.2 (2)
C3—C2—C1118.4 (2)O4—C12—C8122.1 (2)
C3—C2—H2120.8O5—C12—C8113.7 (2)
C1—C2—H2120.8
N3—O6—Cu1—O1−149.3 (3)Cu1—N2—C5—C4−174.51 (18)
N3—O6—Cu1—N1119.1 (3)C1—N2—C5—C6−179.3 (2)
N3—O6—Cu1—N237.8 (3)Cu1—N2—C5—C65.3 (3)
N3—O6—Cu1—Cl1−57.9 (3)C3—C4—C5—N2−0.3 (4)
O1—Cu1—N1—C1018.5 (2)C3—C4—C5—C6179.9 (2)
N2—Cu1—N1—C10−176.4 (2)C10—N1—C6—C7−0.6 (3)
Cl1—Cu1—N1—C10−104.5 (5)Cu1—N1—C6—C7−178.66 (18)
O6—Cu1—N1—C10100.7 (2)C10—N1—C6—C5178.9 (2)
O1—Cu1—N1—C6−163.57 (17)Cu1—N1—C6—C50.9 (3)
N2—Cu1—N1—C61.50 (16)N2—C5—C6—N1−4.1 (3)
Cl1—Cu1—N1—C673.4 (5)C4—C5—C6—N1175.7 (2)
O6—Cu1—N1—C6−81.41 (17)N2—C5—C6—C7175.4 (2)
O1—Cu1—N2—C1−115.2 (3)C4—C5—C6—C7−4.7 (4)
N1—Cu1—N2—C1−178.8 (2)N1—C6—C7—C8−0.1 (4)
Cl1—Cu1—N2—C17.9 (2)C5—C6—C7—C8−179.5 (2)
O6—Cu1—N2—C1−89.9 (2)C6—C7—C8—C90.3 (4)
O1—Cu1—N2—C559.8 (4)C6—C7—C8—C12179.4 (2)
N1—Cu1—N2—C5−3.82 (17)C7—C8—C9—C100.2 (4)
Cl1—Cu1—N2—C5−177.06 (16)C12—C8—C9—C10−179.0 (2)
O6—Cu1—N2—C585.14 (19)C6—N1—C10—C91.1 (4)
Cu1—O6—N3—O880.0 (4)Cu1—N1—C10—C9178.90 (19)
Cu1—O6—N3—O7−100.2 (3)C8—C9—C10—N1−0.8 (4)
C5—N2—C1—C2−0.5 (4)C2—C3—C11—O3−179.4 (3)
Cu1—N2—C1—C2174.3 (2)C4—C3—C11—O31.3 (4)
N2—C1—C2—C3−0.4 (5)C2—C3—C11—O22.1 (4)
C1—C2—C3—C41.0 (4)C4—C3—C11—O2−177.3 (2)
C1—C2—C3—C11−178.3 (3)C7—C8—C12—O4−5.8 (4)
C2—C3—C4—C5−0.6 (4)C9—C8—C12—O4173.4 (3)
C11—C3—C4—C5178.7 (2)C7—C8—C12—O5174.0 (2)
C1—N2—C5—C40.8 (4)C9—C8—C12—O5−6.9 (4)
D—H···AD—HH···AD···AD—H···A
C7—H7···O3ii0.932.453.376 (3)172
C4—H4···O3ii0.932.423.346 (3)179
C2—H2···Cl1iii0.932.73.590 (3)160
C1—H1···Cl10.932.673.258 (3)122
O5—H5A···O7iv0.790 (18)1.798 (19)2.582 (3)172 (4)
O2—H2A···O4ii0.77 (4)1.92 (4)2.676 (3)169 (4)
O1—H1WB···O8v0.802 (18)2.10 (2)2.830 (4)152 (4)
O1—H1WA···Cl1v0.819 (18)2.48 (2)3.220 (2)152 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O3i0.932.453.376 (3)172
C4—H4⋯O3i0.932.423.346 (3)179
C2—H2⋯Cl1ii0.932.73.590 (3)160
C1—H1⋯Cl10.932.673.258 (3)122
O5—H5A⋯O7iii0.790 (18)1.798 (19)2.582 (3)172 (4)
O2—H2A⋯O4i0.77 (4)1.92 (4)2.676 (3)169 (4)
O1—H1WB⋯O8iv0.802 (18)2.10 (2)2.830 (4)152 (4)
O1—H1WA⋯Cl1iv0.819 (18)2.48 (2)3.220 (2)152 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

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5.  Reticular chemistry: occurrence and taxonomy of nets and grammar for the design of frameworks.

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6.  A short history of SHELX.

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7.  Topological equivalences between organic and coordination polymer crystal structures: an organic ladder formed with three-connected molecular and supramolecular synthons.

Authors:  Srinivasulu Aitipamula; Praveen K Thallapally; Ram Thaimattam; Mariusz Jaskólski; Gautam R Desiraju
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8.  [Cd(II)(bpdc).H(2)O](n): a robust, thermally stable porous framework through a combination of a 2-D grid and a cadmium dicarboxylate cluster chain (H(2)bpdc = 2,2'-Bipyridyl-4,4'-dicarboxylic acid).

Authors:  Yen-Hsiang Liu; Yi-Long Lu; Huang-Chun Wu; Ju-Chun Wang; Kuang-Lieh Lu
Journal:  Inorg Chem       Date:  2002-05-06       Impact factor: 5.165

Review 9.  Hydrogen bridges in crystal engineering: interactions without borders.

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  9 in total
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1.  Di-μ-chlorido-bis-[(2'-carb-oxybiphen-yl-2-carboxyl-ato-κO)(2,2':6',2''-terpyridine-κN,N',N'')cadmium(II)] hemihydrate.

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2.  Crystal structure of a chloride-bridged copper(II) dimer: piperazine-1,4-dium bis-(di-μ-chlorido-bis[(4-carboxypyridine-2-carboxyl-ato-κ2N,O2)chlorido-cuprate(II)].

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-27

3.  Di-μ-chlorido-bis-[(2,2'-bipyridine-5,5'-dicarb-oxy-lic acid-κ(2)N,N')chloridocopper(II)] dimethyl-formamide tetra-solvate.

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  3 in total

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