| Literature DB >> 21580977 |
Abstract
In the title compound, C(6)H(6)N(5) (+)·Cl(-), the pyridinium and tetra-zole rings are essentially coplanar. The pyridine N atoms are protonated. In the crystal structure, mol-ecules are connected via N-H⋯Cl, C-H⋯Cl, C-H⋯N and N-H⋯N hydrogen bonds into layers that are parallel to the (001) plane. There are two crystallographically independent mol-ecules in the asymmetric unit which are located on mirror planes.Entities:
Year: 2008 PMID: 21580977 PMCID: PMC2959608 DOI: 10.1107/S1600536808032649
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H6N5+·Cl− | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2c 2b | Cell parameters from 2986 reflections |
| θ = 2.5–27.5° | |
| µ = 0.42 mm−1 | |
| Block, colourless | |
| 0.25 × 0.20 × 0.18 mm |
| Rigaku Mercury2 diffractometer | 2041 independent reflections |
| Radiation source: fine-focus sealed tube | 1511 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 2.5° |
| ω scans | |
| Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | |
| 16127 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2041 reflections | (Δ/σ)max < 0.001 |
| 145 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C9 | 0.0640 (2) | 0.4651 (2) | 0.2500 | 0.0494 (10) | |
| H9 | 0.0803 | 0.5232 | 0.2500 | 0.059* | |
| N6 | 0.26721 (19) | 0.3543 (2) | 0.2500 | 0.0476 (8) | |
| N7 | 0.33865 (17) | 0.3973 (2) | 0.2500 | 0.0466 (8) | |
| N8 | 0.3269 (2) | 0.4819 (3) | 0.2500 | 0.0568 (9) | |
| N9 | 0.24511 (18) | 0.4938 (2) | 0.2500 | 0.0480 (8) | |
| H9A | 0.2202 | 0.5432 | 0.2500 | 0.058* | |
| C7 | 0.2096 (2) | 0.4149 (2) | 0.2500 | 0.0399 (8) | |
| C8 | 0.1215 (2) | 0.3988 (2) | 0.2500 | 0.0373 (8) | |
| N10 | 0.09641 (17) | 0.31585 (19) | 0.2500 | 0.0422 (8) | |
| H10A | 0.1325 | 0.2750 | 0.2500 | 0.051* | |
| C12 | 0.0174 (2) | 0.2938 (3) | 0.2500 | 0.0516 (10) | |
| H12 | 0.0025 | 0.2352 | 0.2500 | 0.062* | |
| C11 | −0.0412 (3) | 0.3566 (3) | 0.2500 | 0.0619 (12) | |
| H11 | −0.0962 | 0.3414 | 0.2500 | 0.074* | |
| C10 | −0.0181 (2) | 0.4434 (3) | 0.2500 | 0.0566 (11) | |
| H10 | −0.0575 | 0.4871 | 0.2500 | 0.068* | |
| N4 | 0.4116 (2) | 0.8572 (2) | 0.2500 | 0.0671 (11) | |
| N3 | 0.3635 (2) | 0.7880 (2) | 0.2500 | 0.0663 (10) | |
| N2 | 0.2886 (2) | 0.8188 (2) | 0.2500 | 0.0615 (10) | |
| H2 | 0.2462 | 0.7856 | 0.2500 | 0.074* | |
| N1 | 0.2836 (2) | 0.9048 (2) | 0.2500 | 0.0591 (10) | |
| N5 | 0.33937 (17) | 1.0833 (2) | 0.2500 | 0.0414 (7) | |
| H5A | 0.2880 | 1.0714 | 0.2500 | 0.050* | |
| C1 | 0.3619 (2) | 0.9270 (2) | 0.2500 | 0.0422 (9) | |
| C2 | 0.3931 (2) | 1.0162 (2) | 0.2500 | 0.0373 (8) | |
| C3 | 0.4760 (2) | 1.0352 (2) | 0.2500 | 0.0475 (9) | |
| H3 | 0.5145 | 0.9905 | 0.2500 | 0.057* | |
| C4 | 0.5005 (2) | 1.1221 (3) | 0.2500 | 0.0533 (10) | |
| H4 | 0.5559 | 1.1355 | 0.2500 | 0.064* | |
| C5 | 0.4444 (3) | 1.1881 (3) | 0.2500 | 0.0546 (11) | |
| H5 | 0.4611 | 1.2461 | 0.2500 | 0.066* | |
| C6 | 0.3620 (2) | 1.1670 (3) | 0.2500 | 0.0486 (9) | |
| H6 | 0.3228 | 1.2110 | 0.2500 | 0.058* | |
| Cl1 | 0.15729 (5) | 0.12495 (6) | 0.2500 | 0.0456 (3) | |
| Cl2 | 0.16485 (7) | 0.66996 (7) | 0.2500 | 0.0764 (4) |
| C9 | 0.048 (2) | 0.0309 (19) | 0.070 (3) | 0.0017 (17) | 0.000 | 0.000 |
| N6 | 0.0410 (18) | 0.0434 (19) | 0.059 (2) | 0.0073 (14) | 0.000 | 0.000 |
| N7 | 0.0324 (16) | 0.052 (2) | 0.055 (2) | 0.0076 (14) | 0.000 | 0.000 |
| N8 | 0.0363 (17) | 0.061 (2) | 0.073 (3) | −0.0044 (15) | 0.000 | 0.000 |
| N9 | 0.0340 (16) | 0.0395 (18) | 0.070 (2) | −0.0027 (13) | 0.000 | 0.000 |
| C7 | 0.041 (2) | 0.0356 (19) | 0.043 (2) | −0.0021 (16) | 0.000 | 0.000 |
| C8 | 0.0345 (18) | 0.0339 (18) | 0.044 (2) | −0.0007 (14) | 0.000 | 0.000 |
| N10 | 0.0408 (17) | 0.0346 (16) | 0.051 (2) | 0.0027 (13) | 0.000 | 0.000 |
| C12 | 0.043 (2) | 0.043 (2) | 0.069 (3) | −0.0116 (18) | 0.000 | 0.000 |
| C11 | 0.036 (2) | 0.059 (3) | 0.091 (4) | −0.0024 (19) | 0.000 | 0.000 |
| C10 | 0.044 (2) | 0.047 (2) | 0.078 (3) | 0.0132 (19) | 0.000 | 0.000 |
| N4 | 0.047 (2) | 0.040 (2) | 0.114 (3) | 0.0033 (16) | 0.000 | 0.000 |
| N3 | 0.053 (2) | 0.0384 (18) | 0.107 (3) | 0.0054 (17) | 0.000 | 0.000 |
| N2 | 0.046 (2) | 0.0358 (18) | 0.103 (3) | −0.0036 (16) | 0.000 | 0.000 |
| N1 | 0.0431 (19) | 0.0336 (18) | 0.100 (3) | 0.0011 (14) | 0.000 | 0.000 |
| N5 | 0.0351 (16) | 0.0371 (16) | 0.0520 (19) | 0.0015 (13) | 0.000 | 0.000 |
| C1 | 0.0372 (19) | 0.0374 (19) | 0.052 (2) | 0.0022 (16) | 0.000 | 0.000 |
| C2 | 0.0327 (18) | 0.0386 (19) | 0.041 (2) | 0.0023 (15) | 0.000 | 0.000 |
| C3 | 0.038 (2) | 0.047 (2) | 0.058 (3) | 0.0049 (17) | 0.000 | 0.000 |
| C4 | 0.043 (2) | 0.053 (2) | 0.064 (3) | −0.0091 (19) | 0.000 | 0.000 |
| C5 | 0.055 (3) | 0.039 (2) | 0.071 (3) | −0.0112 (19) | 0.000 | 0.000 |
| C6 | 0.052 (2) | 0.035 (2) | 0.059 (3) | 0.0049 (17) | 0.000 | 0.000 |
| Cl1 | 0.0394 (5) | 0.0403 (5) | 0.0572 (6) | −0.0005 (4) | 0.000 | 0.000 |
| Cl2 | 0.0564 (7) | 0.0340 (5) | 0.1387 (12) | −0.0022 (5) | 0.000 | 0.000 |
| C9—C8 | 1.384 (5) | N4—N3 | 1.320 (5) |
| C9—C10 | 1.385 (5) | N4—C1 | 1.343 (5) |
| C9—H9 | 0.9300 | N3—N2 | 1.315 (4) |
| N6—C7 | 1.324 (5) | N2—N1 | 1.320 (4) |
| N6—N7 | 1.343 (4) | N2—H2 | 0.8600 |
| N7—N8 | 1.309 (5) | N1—C1 | 1.326 (5) |
| N8—N9 | 1.352 (4) | N5—C6 | 1.335 (5) |
| N9—C7 | 1.340 (4) | N5—C2 | 1.351 (4) |
| N9—H9A | 0.8600 | N5—H5A | 0.8600 |
| C7—C8 | 1.464 (5) | C1—C2 | 1.459 (5) |
| C8—N10 | 1.334 (4) | C2—C3 | 1.389 (5) |
| N10—C12 | 1.337 (4) | C3—C4 | 1.390 (5) |
| N10—H10A | 0.8600 | C3—H3 | 0.9300 |
| C12—C11 | 1.359 (6) | C4—C5 | 1.365 (5) |
| C12—H12 | 0.9300 | C4—H4 | 0.9300 |
| C11—C10 | 1.382 (6) | C5—C6 | 1.387 (5) |
| C11—H11 | 0.9300 | C5—H5 | 0.9300 |
| C10—H10 | 0.9300 | C6—H6 | 0.9300 |
| C8—C9—C10 | 119.0 (4) | N3—N4—C1 | 106.1 (3) |
| C8—C9—H9 | 120.5 | N2—N3—N4 | 105.5 (3) |
| C10—C9—H9 | 120.5 | N3—N2—N1 | 114.6 (3) |
| C7—N6—N7 | 106.0 (3) | N3—N2—H2 | 122.7 |
| N8—N7—N6 | 111.0 (3) | N1—N2—H2 | 122.7 |
| N7—N8—N9 | 106.2 (3) | N2—N1—C1 | 101.2 (3) |
| C7—N9—N8 | 108.0 (3) | C6—N5—C2 | 123.3 (3) |
| C7—N9—H9A | 126.0 | C6—N5—H5A | 118.4 |
| N8—N9—H9A | 126.0 | C2—N5—H5A | 118.4 |
| N6—C7—N9 | 108.9 (3) | N1—C1—N4 | 112.5 (3) |
| N6—C7—C8 | 125.7 (3) | N1—C1—C2 | 125.3 (3) |
| N9—C7—C8 | 125.4 (3) | N4—C1—C2 | 122.2 (3) |
| N10—C8—C9 | 119.3 (3) | N5—C2—C3 | 118.5 (3) |
| N10—C8—C7 | 117.6 (3) | N5—C2—C1 | 118.9 (3) |
| C9—C8—C7 | 123.1 (3) | C3—C2—C1 | 122.5 (3) |
| C8—N10—C12 | 122.6 (3) | C2—C3—C4 | 118.8 (3) |
| C8—N10—H10A | 118.7 | C2—C3—H3 | 120.6 |
| C12—N10—H10A | 118.7 | C4—C3—H3 | 120.6 |
| N10—C12—C11 | 120.3 (4) | C5—C4—C3 | 121.0 (4) |
| N10—C12—H12 | 119.8 | C5—C4—H4 | 119.5 |
| C11—C12—H12 | 119.8 | C3—C4—H4 | 119.5 |
| C12—C11—C10 | 119.1 (4) | C4—C5—C6 | 118.8 (4) |
| C12—C11—H11 | 120.4 | C4—C5—H5 | 120.6 |
| C10—C11—H11 | 120.4 | C6—C5—H5 | 120.6 |
| C11—C10—C9 | 119.8 (4) | N5—C6—C5 | 119.6 (4) |
| C11—C10—H10 | 120.1 | N5—C6—H6 | 120.2 |
| C9—C10—H10 | 120.1 | C5—C6—H6 | 120.2 |
| H··· | ||||
| N9—H9A···Cl2 | 0.86 | 2.14 | 3.001 (3) | 177 |
| N10—H10A···Cl1 | 0.86 | 2.33 | 3.088 (3) | 147 |
| N2—H2···Cl2 | 0.86 | 2.22 | 3.050 (4) | 163 |
| N5—H5A···Cl1i | 0.86 | 2.29 | 3.049 (3) | 147 |
| N5—H5A···N1 | 0.86 | 2.55 | 2.881 (4) | 104 |
| N10—H10A···N6 | 0.86 | 2.52 | 2.858 (4) | 105 |
| C9—H9···Cl2 | 0.93 | 2.64 | 3.545 (4) | 165 |
| C3—H3···N8ii | 0.93 | 2.60 | 3.329 (5) | 136 |
| C6—H6···N6i | 0.93 | 2.38 | 3.260 (5) | 159 |
| C10—H10···Cl1iii | 0.93 | 2.67 | 3.596 (4) | 174 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N9—H9 | 0.86 | 2.14 | 3.001 (3) | 177 |
| N10—H10 | 0.86 | 2.33 | 3.088 (3) | 147 |
| N2—H2⋯Cl2 | 0.86 | 2.22 | 3.050 (4) | 163 |
| N5—H5 | 0.86 | 2.29 | 3.049 (3) | 147 |
| N5—H5 | 0.86 | 2.55 | 2.881 (4) | 104 |
| N10—H10 | 0.86 | 2.52 | 2.858 (4) | 105 |
| C9—H9⋯Cl2 | 0.93 | 2.64 | 3.545 (4) | 165 |
| C3—H3⋯N8ii | 0.93 | 2.60 | 3.329 (5) | 136 |
| C6—H6⋯N6i | 0.93 | 2.38 | 3.260 (5) | 159 |
| C10—H10⋯Cl1iii | 0.93 | 2.67 | 3.596 (4) | 174 |
Symmetry codes: (i) ; (ii) ; (iii) .