Literature DB >> 21580977

2-(2H-Tetra-zol-5-yl)pyridinium chloride.

Jing Dai1, Xiao-Chun Wen.   

Abstract

In the title compound, C(6)H(6)N(5) (+)·Cl(-), the pyridinium and tetra-zole rings are essentially coplanar. The pyridine N atoms are protonated. In the crystal structure, mol-ecules are connected via N-H⋯Cl, C-H⋯Cl, C-H⋯N and N-H⋯N hydrogen bonds into layers that are parallel to the (001) plane. There are two crystallographically independent mol-ecules in the asymmetric unit which are located on mirror planes.

Entities:  

Year:  2008        PMID: 21580977      PMCID: PMC2959608          DOI: 10.1107/S1600536808032649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on tetra­zole derivatives, see: Dai & Fu (2008 ▶); Wang et al. (2005 ▶); Wen (2008 ▶); Xiong et al. (2002 ▶).

Experimental

Crystal data

C6H6N5 +·Cl− M = 183.61 Orthorhombic, a = 16.375 (3) Å b = 15.313 (3) Å c = 6.5176 (13) Å V = 1634.3 (5) Å3 Z = 8 Mo Kα radiation μ = 0.41 mm−1 T = 298 (2) K 0.25 × 0.20 × 0.18 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 0.938 16127 measured reflections 2041 independent reflections 1511 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.148 S = 1.14 2041 reflections 145 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808032649/nc2115sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808032649/nc2115Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N5+·ClF(000) = 752
Mr = 183.61Dx = 1.492 Mg m3
Orthorhombic, PbcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2c 2bCell parameters from 2986 reflections
a = 16.375 (3) Åθ = 2.5–27.5°
b = 15.313 (3) ŵ = 0.42 mm1
c = 6.5176 (13) ÅT = 298 K
V = 1634.3 (5) Å3Block, colourless
Z = 80.25 × 0.20 × 0.18 mm
Rigaku Mercury2 diffractometer2041 independent reflections
Radiation source: fine-focus sealed tube1511 reflections with I > 2σ(I)
graphiteRint = 0.077
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.5°
ω scansh = −21→21
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −19→19
Tmin = 0.910, Tmax = 0.938l = −8→8
16127 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0616P)2 + 0.4596P] where P = (Fo2 + 2Fc2)/3
2041 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C90.0640 (2)0.4651 (2)0.25000.0494 (10)
H90.08030.52320.25000.059*
N60.26721 (19)0.3543 (2)0.25000.0476 (8)
N70.33865 (17)0.3973 (2)0.25000.0466 (8)
N80.3269 (2)0.4819 (3)0.25000.0568 (9)
N90.24511 (18)0.4938 (2)0.25000.0480 (8)
H9A0.22020.54320.25000.058*
C70.2096 (2)0.4149 (2)0.25000.0399 (8)
C80.1215 (2)0.3988 (2)0.25000.0373 (8)
N100.09641 (17)0.31585 (19)0.25000.0422 (8)
H10A0.13250.27500.25000.051*
C120.0174 (2)0.2938 (3)0.25000.0516 (10)
H120.00250.23520.25000.062*
C11−0.0412 (3)0.3566 (3)0.25000.0619 (12)
H11−0.09620.34140.25000.074*
C10−0.0181 (2)0.4434 (3)0.25000.0566 (11)
H10−0.05750.48710.25000.068*
N40.4116 (2)0.8572 (2)0.25000.0671 (11)
N30.3635 (2)0.7880 (2)0.25000.0663 (10)
N20.2886 (2)0.8188 (2)0.25000.0615 (10)
H20.24620.78560.25000.074*
N10.2836 (2)0.9048 (2)0.25000.0591 (10)
N50.33937 (17)1.0833 (2)0.25000.0414 (7)
H5A0.28801.07140.25000.050*
C10.3619 (2)0.9270 (2)0.25000.0422 (9)
C20.3931 (2)1.0162 (2)0.25000.0373 (8)
C30.4760 (2)1.0352 (2)0.25000.0475 (9)
H30.51450.99050.25000.057*
C40.5005 (2)1.1221 (3)0.25000.0533 (10)
H40.55591.13550.25000.064*
C50.4444 (3)1.1881 (3)0.25000.0546 (11)
H50.46111.24610.25000.066*
C60.3620 (2)1.1670 (3)0.25000.0486 (9)
H60.32281.21100.25000.058*
Cl10.15729 (5)0.12495 (6)0.25000.0456 (3)
Cl20.16485 (7)0.66996 (7)0.25000.0764 (4)
U11U22U33U12U13U23
C90.048 (2)0.0309 (19)0.070 (3)0.0017 (17)0.0000.000
N60.0410 (18)0.0434 (19)0.059 (2)0.0073 (14)0.0000.000
N70.0324 (16)0.052 (2)0.055 (2)0.0076 (14)0.0000.000
N80.0363 (17)0.061 (2)0.073 (3)−0.0044 (15)0.0000.000
N90.0340 (16)0.0395 (18)0.070 (2)−0.0027 (13)0.0000.000
C70.041 (2)0.0356 (19)0.043 (2)−0.0021 (16)0.0000.000
C80.0345 (18)0.0339 (18)0.044 (2)−0.0007 (14)0.0000.000
N100.0408 (17)0.0346 (16)0.051 (2)0.0027 (13)0.0000.000
C120.043 (2)0.043 (2)0.069 (3)−0.0116 (18)0.0000.000
C110.036 (2)0.059 (3)0.091 (4)−0.0024 (19)0.0000.000
C100.044 (2)0.047 (2)0.078 (3)0.0132 (19)0.0000.000
N40.047 (2)0.040 (2)0.114 (3)0.0033 (16)0.0000.000
N30.053 (2)0.0384 (18)0.107 (3)0.0054 (17)0.0000.000
N20.046 (2)0.0358 (18)0.103 (3)−0.0036 (16)0.0000.000
N10.0431 (19)0.0336 (18)0.100 (3)0.0011 (14)0.0000.000
N50.0351 (16)0.0371 (16)0.0520 (19)0.0015 (13)0.0000.000
C10.0372 (19)0.0374 (19)0.052 (2)0.0022 (16)0.0000.000
C20.0327 (18)0.0386 (19)0.041 (2)0.0023 (15)0.0000.000
C30.038 (2)0.047 (2)0.058 (3)0.0049 (17)0.0000.000
C40.043 (2)0.053 (2)0.064 (3)−0.0091 (19)0.0000.000
C50.055 (3)0.039 (2)0.071 (3)−0.0112 (19)0.0000.000
C60.052 (2)0.035 (2)0.059 (3)0.0049 (17)0.0000.000
Cl10.0394 (5)0.0403 (5)0.0572 (6)−0.0005 (4)0.0000.000
Cl20.0564 (7)0.0340 (5)0.1387 (12)−0.0022 (5)0.0000.000
C9—C81.384 (5)N4—N31.320 (5)
C9—C101.385 (5)N4—C11.343 (5)
C9—H90.9300N3—N21.315 (4)
N6—C71.324 (5)N2—N11.320 (4)
N6—N71.343 (4)N2—H20.8600
N7—N81.309 (5)N1—C11.326 (5)
N8—N91.352 (4)N5—C61.335 (5)
N9—C71.340 (4)N5—C21.351 (4)
N9—H9A0.8600N5—H5A0.8600
C7—C81.464 (5)C1—C21.459 (5)
C8—N101.334 (4)C2—C31.389 (5)
N10—C121.337 (4)C3—C41.390 (5)
N10—H10A0.8600C3—H30.9300
C12—C111.359 (6)C4—C51.365 (5)
C12—H120.9300C4—H40.9300
C11—C101.382 (6)C5—C61.387 (5)
C11—H110.9300C5—H50.9300
C10—H100.9300C6—H60.9300
C8—C9—C10119.0 (4)N3—N4—C1106.1 (3)
C8—C9—H9120.5N2—N3—N4105.5 (3)
C10—C9—H9120.5N3—N2—N1114.6 (3)
C7—N6—N7106.0 (3)N3—N2—H2122.7
N8—N7—N6111.0 (3)N1—N2—H2122.7
N7—N8—N9106.2 (3)N2—N1—C1101.2 (3)
C7—N9—N8108.0 (3)C6—N5—C2123.3 (3)
C7—N9—H9A126.0C6—N5—H5A118.4
N8—N9—H9A126.0C2—N5—H5A118.4
N6—C7—N9108.9 (3)N1—C1—N4112.5 (3)
N6—C7—C8125.7 (3)N1—C1—C2125.3 (3)
N9—C7—C8125.4 (3)N4—C1—C2122.2 (3)
N10—C8—C9119.3 (3)N5—C2—C3118.5 (3)
N10—C8—C7117.6 (3)N5—C2—C1118.9 (3)
C9—C8—C7123.1 (3)C3—C2—C1122.5 (3)
C8—N10—C12122.6 (3)C2—C3—C4118.8 (3)
C8—N10—H10A118.7C2—C3—H3120.6
C12—N10—H10A118.7C4—C3—H3120.6
N10—C12—C11120.3 (4)C5—C4—C3121.0 (4)
N10—C12—H12119.8C5—C4—H4119.5
C11—C12—H12119.8C3—C4—H4119.5
C12—C11—C10119.1 (4)C4—C5—C6118.8 (4)
C12—C11—H11120.4C4—C5—H5120.6
C10—C11—H11120.4C6—C5—H5120.6
C11—C10—C9119.8 (4)N5—C6—C5119.6 (4)
C11—C10—H10120.1N5—C6—H6120.2
C9—C10—H10120.1C5—C6—H6120.2
D—H···AD—HH···AD···AD—H···A
N9—H9A···Cl20.862.143.001 (3)177
N10—H10A···Cl10.862.333.088 (3)147
N2—H2···Cl20.862.223.050 (4)163
N5—H5A···Cl1i0.862.293.049 (3)147
N5—H5A···N10.862.552.881 (4)104
N10—H10A···N60.862.522.858 (4)105
C9—H9···Cl20.932.643.545 (4)165
C3—H3···N8ii0.932.603.329 (5)136
C6—H6···N6i0.932.383.260 (5)159
C10—H10···Cl1iii0.932.673.596 (4)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N9—H9A⋯Cl20.862.143.001 (3)177
N10—H10A⋯Cl10.862.333.088 (3)147
N2—H2⋯Cl20.862.223.050 (4)163
N5—H5A⋯Cl1i0.862.293.049 (3)147
N5—H5A⋯N10.862.552.881 (4)104
N10—H10A⋯N60.862.522.858 (4)105
C9—H9⋯Cl20.932.643.545 (4)165
C3—H3⋯N8ii0.932.603.329 (5)136
C6—H6⋯N6i0.932.383.260 (5)159
C10—H10⋯Cl1iii0.932.673.596 (4)174

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

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Authors:  Ren-Gen Xiong; Xiang Xue; Hong Zhao; Xiao-Zeng You; Brendan F Abrahams; Ziling Xue
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2.  A short history of SHELX.

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3.  Syntheses, crystal structures, and luminescent properties of three novel zinc coordination polymers with tetrazolyl ligands.

Authors:  Xi-Sen Wang; Yun-Zhi Tang; Xue-Feng Huang; Zhi-Rong Qu; Chi-Ming Che; Philip Wai Hong Chan; Ren-Gen Xiong
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4.  2-{4-[5-(3-Pyrid-yl)-2H-tetra-zol-2-ylmeth-yl]phen-yl}benzonitrile.

Authors:  Wei Dai; Da-Wei Fu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

5.  Diaqua-[5-(2-pyrid-yl)tetra-zolato-κN,N]manganese(II).

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  5 in total

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