Literature DB >> 2158083

Prediction of oligonucleotide frequencies based upon dinucleotide frequencies obtained from the nearest neighbor analysis.

J Hong1.   

Abstract

A statistical method of predicting hexanucleotide frequencies is presented. The method requires dinucleotide frequencies which can be readily obtained by nearest neighbor analysis. The frequencies of 64 hexanucleotides of E. coli were estimated and compared well with those predicted by a third order Markov chain.

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Year:  1990        PMID： 2158083      PMCID： PMC330535          DOI： 10.1093/nar/18.6.1625

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  22 in total

1.  Cleavage of mouse DNA by a restriction enzyme as a clue to the arrangement of genes.

Authors:  M Botchan; G McKenna; P A Sharp
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974

2.  Representation of DNA sequences in recombinant DNA libraries prepared by restriction enzyme partial digestion.

Authors:  B Seed; R C Parker; N Davidson
Journal:  Gene       Date:  1982-09       Impact factor: 3.688

3.  The average spacing of restriction enzyme recognition sites in DNA.

Authors:  G P Moore; A R Moore
Journal:  J Theor Biol       Date:  1982-09-07       Impact factor: 2.691

4.  Optimal use of restriction enzymes in the analysis of human DNA polymorphism.

Authors:  F Bastié-Sigeac; G Lucotte
Journal:  Hum Genet       Date:  1983       Impact factor: 4.132

5.  Statistical characterization of nucleic acid sequence functional domains.

Authors:  T F Smith; M S Waterman; J R Sadler
Journal:  Nucleic Acids Res       Date:  1983-04-11       Impact factor: 16.971

6.  A method for detecting distant evolutionary relationships between protein or nucleic acid sequences in the presence of deletions or insertions.

Authors:  T C Elleman
Journal:  J Mol Evol       Date:  1978-06-20       Impact factor: 2.395

7.  The universal dinucleotide asymmetry rules in DNA and the amino acid codon choice.

Authors:  R Nussinov
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

8.  Nearest neighbor nucleotide patterns. Structural and biological implications.

Authors:  R Nussinov
Journal:  J Biol Chem       Date:  1981-08-25       Impact factor: 5.157

9.  Some rules in the ordering of nucleotides in the DNA.

Authors:  R Nussinov
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

10.  Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.

Authors:  D C Schwartz; C R Cantor
Journal:  Cell       Date:  1984-05       Impact factor: 41.582
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  5 in total

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2.  Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.

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Journal:  Bioinformatics       Date:  2015-06-30       Impact factor: 6.937

3.  A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence Analyses.

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4.  Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data.

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Journal:  Quant Biol       Date:  2020-05-25

5.  Optimal choice of word length when comparing two Markov sequences using a χ 2-statistic.

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Journal:  BMC Genomics       Date:  2017-10-03       Impact factor: 3.969
  5 in total

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